mRNA_S-dermatodea_contig9983.17901.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9983.17901.1
Unique NamemRNA_S-dermatodea_contig9983.17901.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9983.17901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9983contigS-dermatodea_contig9983:4990..5535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.7340426-CDS-S-dermatodea_contig9983:4989..51931622925441.7340426-CDS-S-dermatodea_contig9983:4989..5193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 4990..5193 +
1694079936.1422226-CDS-S-dermatodea_contig9983:4989..51931694079936.1422226-CDS-S-dermatodea_contig9983:4989..5193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 4990..5193 +
1622925441.746408-CDS-S-dermatodea_contig9983:5439..55351622925441.746408-CDS-S-dermatodea_contig9983:5439..5535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 5440..5535 +
1694079936.1521287-CDS-S-dermatodea_contig9983:5439..55351694079936.1521287-CDS-S-dermatodea_contig9983:5439..5535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 5440..5535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9983.17901.1prot_S-dermatodea_contig9983.17901.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9983 4990..5535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9983.17901.1

>prot_S-dermatodea_contig9983.17901.1 ID=prot_S-dermatodea_contig9983.17901.1|Name=mRNA_S-dermatodea_contig9983.17901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
QHHALVAGNNKRMPIDSAVPQLERHAATSPAFKATSSVHFLPLVAEPSKK
RVKGVSSPTERAIGATNKGSTVHCCDPAFKNDREVWVRAPYLRPAGDKVA
back to top

mRNA from alignment at S-dermatodea_contig9983:4990..5535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9983.17901.1 ID=mRNA_S-dermatodea_contig9983.17901.1|Name=mRNA_S-dermatodea_contig9983.17901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig9983:4990..5535+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACCACGCCCTTGTTGCAGGGAACAACAAGCGTATGCCGATCGACTC
TGCTGTTCCTCAGCTAGAGCGACACGCTGCGACCTCCCCGGCCTTCAAAG
CAACGTCCTCTGTTCACTTCCTCCCTCTCGTCGCCGAACCGTCAAAGAAG
AGGGTCAAGGGCGTTAGCTCACCGACGGAACGAGCTATCGGCGCGACGAA
CAAGGTGCGAACGCGCTCGAAACCTCGTGAGGCAACCCGCTCCATGCTTT
TGTGATCTGCGTTTGGCGGGGCGTGATGTATCTCGCCTGCGCGTTTCCAT
GCGTCCCTCCATGCCGGGGAACATGTATGGCACGTGCGGAGCTGATGGCG
TACGATCGATGGAGACAAACGTCGGCCCTCCAACTCCCGACAACCGTCCC
CTAAACAATCGCCCCCTTGCGCTGGGTCCTGCATCGTTCCTCTGTGACAG
GGATCCACGGTACACTGCTGCGATCCCGCTTTCAAGAACGACAGAGAGGT
GTGGGTCAGGGCGCCGTACCTGAGGCCCGCGGGTGACAAGGTGGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9983:4990..5535+

>mRNA_S-dermatodea_contig9983.17901.1 ID=mRNA_S-dermatodea_contig9983.17901.1|Name=mRNA_S-dermatodea_contig9983.17901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9983:4990..5535+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACCACGCCCTTGTTGCAGGGAACAACAAGCGTATGCCGATCGACTC
TGCTGTTCCTCAGCTAGAGCGACACGCTGCGACCTCCCCGGCCTTCAAAG
CAACGTCCTCTGTTCACTTCCTCCCTCTCGTCGCCGAACCGTCAAAGAAG
AGGGTCAAGGGCGTTAGCTCACCGACGGAACGAGCTATCGGCGCGACGAA
CAAGCAGCACCACGCCCTTGTTGCAGGGAACAACAAGCGTATGCCGATCG
ACTCTGCTGTTCCTCAGCTAGAGCGACACGCTGCGACCTCCCCGGCCTTC
AAAGCAACGTCCTCTGTTCACTTCCTCCCTCTCGTCGCCGAACCGTCAAA
GAAGAGGGTCAAGGGCGTTAGCTCACCGACGGAACGAGCTATCGGCGCGA
CGAACAAGGGATCCACGGTACACTGCTGCGATCCCGCTTTCAAGAACGAC
AGAGAGGTGTGGGTCAGGGCGCCGTACCTGAGGCCCGCGGGTGACAAGGT
GGCCGGATCCACGGTACACTGCTGCGATCCCGCTTTCAAGAACGACAGAG
AGGTGTGGGTCAGGGCGCCGTACCTGAGGCCCGCGGGTGACAAGGTGGCC
back to top