prot_S-dermatodea_contig9940.17870.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9940.17870.1
Unique Nameprot_S-dermatodea_contig9940.17870.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length102
Homology
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.930e-17
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0
Query:   20 PTNEVSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 83
            PT +VS T WYQDVK WVG AS AC  + GV A KEDDD RLWGVFLG+  LL+G +  ++A++
Sbjct: 1089 PTGQVSGTPWYQDVKTWVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGGEFFLIARE 1152          
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.900e-15
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 0
Query:    2 WPGSNFESPADPASIQTDPTNEV--------------------SETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAK--KLFFFVVHTERGGGGED 99
            WPGSN E  + PA +   P+                       S T WYQDVK +VG AS  C  + GV  ++EDDD RLWGVFLGL  LL+G++  ++A+  KL  F    E    G +
Sbjct:  966 WPGSNSEV-SGPAPVHISPSXXXXXXXXXXXXXXXXXXXXXXGSRTPWYQDVKTFVGAASLVCLAVFGVFHDEEDDDPRLWGVFLGLGMLLVGVEFGLIAREYKLLCFTPRAEAASAGNE 1084          
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5KNW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query:   24 VSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 83
            VS T WYQDVK +VG AS AC  + GV A KED+D RLWGVFLG+   LLG++ L++A++
Sbjct:  416 VSGTPWYQDVKTFVGAASVACLTVFGVFASKEDEDPRLWGVFLGVGMTLLGVEFLLIARE 475          
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.480e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   23 EVSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 83
            +VS T WYQDVK  VG AS AC  + GV A KEDDD RLWGVFLG+  LL+G + +++A++
Sbjct: 1185 QVSGTPWYQDVKTLVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGAEFVLIARE 1245          
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.380e-12
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    9 SPADPASIQTDPTNEVSETRWYQD-VKAWV-------GIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAK 82
            SP  PAS+QT+P+++ S T  YQD ++AWV       G A A C  + GV   KEDDD RLWG+FLG+  +L  ++ ++VAK
Sbjct:  728 SPISPASLQTNPSSQDSRTPRYQDRMRAWVKDLRVQVGAAGALCVTVFGVFYAKEDDDPRLWGLFLGIGLVLAVVEFVLVAK 809          
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5KED3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.170e-8
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 0
Query:    1 PWPGSNFESPADPASIQTDPTNEVSETR--WYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIV----AKK 83
            PW  SN+++               SETR  WY+DVKAW+ +AS AC  +      K+DDD RLWG FL +  LL+ +  +++    AKK
Sbjct:  314 PWLSSNYQN---------------SETRYVWYEDVKAWILLASEACLTVFTAFVAKDDDDPRLWGSFLAVGMLLILIDAVLIGVLIAKK 387          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FX56_ECTSI2.930e-1759.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FJV1_ECTSI7.900e-1538.33LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KNW8_9PHAE1.360e-1458.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX69_ECTSI1.480e-1457.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JRW5_9PHAE5.380e-1246.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KED3_9PHAE4.170e-838.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 82..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 35..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9940contigS-dermatodea_contig9940:287..1450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9940.17870.1mRNA_S-dermatodea_contig9940.17870.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9940 287..1450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9940.17870.1 ID=prot_S-dermatodea_contig9940.17870.1|Name=mRNA_S-dermatodea_contig9940.17870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
PWPGSNFESPADPASIQTDPTNEVSETRWYQDVKAWVGIASAACFILCGV
NAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKKLFFFVVHTERGGGGEDW
E*
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