mRNA_S-dermatodea_contig12930.1781.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12930.1781.1
Unique NamemRNA_S-dermatodea_contig12930.1781.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A6H5JPB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 7.280e-124
Identity = 169/214 (78.97%), Postives = 189/214 (88.32%), Query Frame = 1 
Query:  127 FVNLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLDLLREGRPLETTLPILKA 768
            F     EDYP+ASQAEMR+WLK + DGTNFIKCWPIEGHDFFGQMERH+ RV+DV+VDDFMGGV+EYR+++GK GSQER + DYKFFKSLQQTMLSRQL+ YA+ S EARRLLLYMATSKAPDELYFPTLTQLD R+SSMATC+DTRHFSYWIRPGGSWHPEYLTLDH P+V NATEFYIRKVE+ +GS  LLD LD+LR G PL+  LPILKA
Sbjct:    9 FCRCRQEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTVSGKTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVYNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDAALPILKA 222
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: D8LSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.850e-122
Identity = 169/212 (79.72%), Postives = 190/212 (89.62%), Query Frame = 1 
Query:  133 NLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLDLLREGRPLETTLPILKA 768
            N+  EDYP+ASQAEMR+WLK + DGTNFIKCWPIEGHDFFGQMERH+ RV+DV+VDDFMGGV+EYR+++G  GSQER + DYKFFKSLQQTMLSRQL+ YA+ S EARRLLLYMATSKAPDELYFPTLTQLD R+SSMATC+DTRHFSYWIRPGGSWHPEYLTLDH P+V NATEFYIRKVE+ +GS  LLD LD+LR G PL+ TLPILKA
Sbjct:  126 NVYEEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTMSGNTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVHNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDATLPILKA 337
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A6T5PXW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 274 bits (700), Expect = 9.260e-87
Identity = 137/249 (55.02%), Postives = 174/249 (69.88%), Query Frame = 1 
Query:   13 DNVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLKTKPDGT----NFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLDLLREGRPLET 747
            +N HQ+  VSVSW G+TVVERTLALMQ A+E D +W +FVN+GHEDYPA  Q +M  WL      T    NFIKCW I GHDFFGQ E H+ RV+ V +D+F+GG  +  +   +P    R     KF+KSLQQT L R    YAV+  E+RR+LL+MA SKAPDE++FPT+ Q     +  ATCDDTRHFS+WIRPGGSWHPEYL ++HL +V+++ +F++RK + G  +G LLD LD LR GR LET
Sbjct:  110 ENTHQLHPVSVSWAGITVVERTLALMQVALEQDPTWGYFVNIGHEDYPAMGQGQMSAWLGRHEVETGGPVNFIKCWDILGHDFFGQWEHHERRVEVVTIDNFVGGTED--TSYTRPRDDLRG---IKFYKSLQQTTLHRDFVDYAVYGIESRRILLFMANSKAPDEIFFPTVLQTRPDLAETATCDDTRHFSHWIRPGGSWHPEYLRIEHLKLVLDSGKFFLRKTD-GDSAG-LLDALDALRGGRALET 351
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A7S2UWP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 272 bits (695), Expect = 5.080e-86
Identity = 136/278 (48.92%), Postives = 181/278 (65.11%), Query Frame = 1 
Query:    1 IAGKDNVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGV------REYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNATEFYIRKV----------------EEGQGSGNLLDVLDLLREGRPLETTLPILKA 768
            + G +NV ++ SVS+SW G+TVVERTLA MQ A+E +  W++FVNLGHEDYP A+Q +M + L     GTNFIKCWP+EGH+FFGQ E H+ RV+++  D F G        RE+    G            KF+KSLQQT+LSR+   Y+ ++ EARR+LLY+A SKAPDEL+FPT  Q ++  ++ ATCDDTRHFS+WIRPGGSWHPEYL L HLP+++ + +F+ RK+                EEG G   L  V+ L+RE + L   L  +KA
Sbjct:  127 LKGLENVKEIYSVSISWAGITVVERTLAQMQTALESNEDWQYFVNLGHEDYPLATQNDMSRLLGEYAPGTNFIKCWPVEGHNFFGQWEHHEKRVEELTFDTFTGEAHDVHIRREHMPTLGM-----------KFYKSLQQTVLSREFCEYSCYALEARRILLYLANSKAPDELFFPTALQTNADMAAKATCDDTRHFSHWIRPGGSWHPEYLQLMHLPLLLKSDKFFARKISHNESLPLVTALNVLMEEGNGPELLETVVGLMREDKNLTRVLDSVKA 393
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A4D9D7W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 260 bits (665), Expect = 8.880e-81
Identity = 134/248 (54.03%), Postives = 165/248 (66.53%), Query Frame = 1 
Query:   28 VPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLK-TKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSR--FSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNAT--------EFYIRKVEEGQGSGNLLDVLDLLREGRP 738
            +PSVSVSWGG+TVVERTLALMQ A+E D  W +FVN+G EDYP  S A ++++L    P  TNFI CW + GHDFFGQ E H+ RV  V VD F G  RE R     P  +      Y F+KSLQQT+LSR     AV +PE+RRLLLY+ATS+APDE++FPTL  L S    ++ ATC+ T HFS+WIRPGGSWHPEYLT  HLP+++            F+ RK + G+GS  L+  LD LRE RP
Sbjct:  139 IPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGFPRSPPKE------YTFYKSLQQTVLSRVFVESAVHAPESRRLLLYLATSEAPDEIFFPTLLHLPSNRAHAARATCNSTLHFSHWIRPGGSWHPEYLTPLHLPLLLEKIGASSPSFPAFWARKFDVGKGSSALMAALDYLRECRP 380
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A835YXC2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.880e-78
Identity = 126/256 (49.22%), Postives = 168/256 (65.62%), Query Frame = 1 
Query:   16 NVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGSWHPEYLTLDHLPIVMNATEF-------YIRKVEEGQGSGNLLDVLDLLREGRPLETTLPIL 762
            N   + S SV+WGG++VVERTLAL Q A+E+D  W +FVN+GHEDYP AS  E+RK L   P G N++KCW +  HDFFGQ+ERH  + + V VDDF G V  + +   KP    RA   ++F+KSLQQ ++SR    +AV+S +ARRLLL  A+  APDE++FPTL Q    + S ATCD T H+S+WIRPG SWHPEYL L HL +++    +       + RKV+ G  S  LL V+D L  G+ LE+ LP++
Sbjct:   98 NAVMLESTSVAWGGISVVERTLALAQAALELDQRWSYFVNIGHEDYPNASPREIRKALTAMPAGRNYMKCWHLAEHDFFGQIERHGPKARKVVVDDFAGMV--HPTGFSKPADSMRAL-GFQFYKSLQQMVISRDFCRHAVYSADARRLLLVTASLLAPDEVFFPTLLQQSDSYRSTATCDSTLHYSHWIRPGHSWHPEYLDLTHLELLLGGRPWVGRGDVLFFRKVDFGSKSAALLSVIDALNGGKSLESCLPVM 350
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A7S1U3N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 9.450e-40
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:   16 NVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQ 402
            NV  + SVSVSW GVTVVERTLAL Q  +E    W FFVNLGHEDYP     EM+ WL   P  TNFIKCWPI  H+FFGQ+E H  RV+ +HVDDF G V +   +  +P  +E     +KF+K+LQQ
Sbjct:   58 NVEILESVSVSWAGVTVVERTLALAQTCLEAFGHWDFFVNLGHEDYPVVGMEEMQAWLGAHPRETNFIKCWPIGRHNFFGQVESHGHRVRQIHVDDFAGDVHDITDVE-RPKFKE-----FKFYKALQQ 180
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: W7UCA6_9STRA (Core-2 i-branching enzyme n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCA6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.020e-34
Identity = 78/166 (46.99%), Postives = 94/166 (56.63%), Query Frame = 1 
Query:   28 VPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLK-TKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVF--SPEARRLLLYMATSK--APDELYFP 510
            +PSVSVSWGG+TVVERTLALMQ A+E D  W +FVN+G EDYP  S A ++++L    P  TNFI CW + GHDFFGQ E H+ RV  V VD F G  RE R L   P    +        + L        LSHYA    S   R  L   A+SK  +P  L+ P
Sbjct:  139 IPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGLPRSPPKVRQGH--MHMHQYLYNVSFPLSLSHYAHLHASLHDRNTLSTRASSKPSSPAPLWSP 302
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A2V3J6S7_9FLOR (Beta-glucuronosyltransferase GlcAT14B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6S7_9FLOR)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-12
Identity = 63/248 (25.40%), Postives = 106/248 (42.74%), Query Frame = 1 
Query:   10 KDNVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHEDYPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQME--RHDSRVKDVHVDDFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPEARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPG--GSWHPEYL--------TLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLD 717
            +DNVH +PS SV++ G+++V  +L  MQ A +  + W +F+N+   DYP  S    R+ L            + I   D++ + +  R+D    D  +       R   S   +P S      ++ F  +    +L R    + + SP +RR+LL  A +  P+E YF  +     RF+        RH   W+  G     HP Y+        T      + N+  F+ RK+     +  +L+ LD
Sbjct:   68 EDNVHILPSESVTYRGISMVLNSLNAMQAAADHSADWTYFINISGSDYPLLSPTNQRRLLSDFDFAERKRSFFSISPKDWWTESKTYRYDRLFTDTSLSFNESEHRIVDSYTDQPLSTVH---NFTFVAAEAWMLLHRDFVDFLLKSPFSRRMLLAFAYALEPEEHYFAVVAYNTPRFNDSTVPHALRHVE-WVHNGKHSGQHPYYVDALDDDGKTWSFQHKIENSGCFFTRKIRNKDAT--ILEYLD 309
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BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Match: A0A7S1UIP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIP0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.410e-10
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  568 HFSYWIRPGGSWHPEYLTLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLDLLREGRPLE 744
            H++YW+RPGGSWHPEYL L HL  ++ +   ++RKV+ G  S + +  +D LR G  ++
Sbjct:    5 HYTYWVRPGGSWHPEYLDLRHLYDMLQSDAIFVRKVDIGGASRDFVKAVDALRTGGEID 63
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12930.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JPB4_9PHAE7.280e-12478.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LSR7_ECTSI1.850e-12279.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6T5PXW9_HETAK9.260e-8755.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWP2_9STRA5.080e-8648.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D7W1_9STRA8.880e-8154.03Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YXC2_9STRA1.880e-7849.22Core-2/I-branching enzyme-domain-containing protei... [more]
A0A7S1U3N2_9STRA9.450e-4055.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7UCA6_9STRA4.020e-3446.99Core-2 i-branching enzyme n=1 Tax=Nannochloropsis ... [more]
A0A2V3J6S7_9FLOR1.260e-1225.40Beta-glucuronosyltransferase GlcAT14B n=1 Tax=Grac... [more]
A0A7S1UIP0_9STRA2.410e-1044.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12930contigS-dermatodea_contig12930:539..5365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog130081.XP_005703545.1
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.1.150,2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Hectar predicted targeting categoryother localisation
Exons7
Model size771
Cds size771
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.7498236-CDS-S-dermatodea_contig12930:538..6701622924267.7498236-CDS-S-dermatodea_contig12930:538..670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 539..670 -
1694079137.878949-CDS-S-dermatodea_contig12930:538..6701694079137.878949-CDS-S-dermatodea_contig12930:538..670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 539..670 -
1622924267.765145-CDS-S-dermatodea_contig12930:984..10781622924267.765145-CDS-S-dermatodea_contig12930:984..1078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 985..1078 -
1694079137.8902678-CDS-S-dermatodea_contig12930:984..10781694079137.8902678-CDS-S-dermatodea_contig12930:984..1078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 985..1078 -
1622924267.774665-CDS-S-dermatodea_contig12930:2025..21981622924267.774665-CDS-S-dermatodea_contig12930:2025..2198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 2026..2198 -
1694079137.8982167-CDS-S-dermatodea_contig12930:2025..21981694079137.8982167-CDS-S-dermatodea_contig12930:2025..2198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 2026..2198 -
1622924267.7832756-CDS-S-dermatodea_contig12930:2523..26071622924267.7832756-CDS-S-dermatodea_contig12930:2523..2607Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 2524..2607 -
1694079137.907463-CDS-S-dermatodea_contig12930:2523..26071694079137.907463-CDS-S-dermatodea_contig12930:2523..2607Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 2524..2607 -
1622924267.7916632-CDS-S-dermatodea_contig12930:3038..31821622924267.7916632-CDS-S-dermatodea_contig12930:3038..3182Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 3039..3182 -
1694079137.9191682-CDS-S-dermatodea_contig12930:3038..31821694079137.9191682-CDS-S-dermatodea_contig12930:3038..3182Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 3039..3182 -
1622924267.802336-CDS-S-dermatodea_contig12930:4348..44651622924267.802336-CDS-S-dermatodea_contig12930:4348..4465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 4349..4465 -
1694079137.9279516-CDS-S-dermatodea_contig12930:4348..44651694079137.9279516-CDS-S-dermatodea_contig12930:4348..4465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 4349..4465 -
1622924267.8115373-CDS-S-dermatodea_contig12930:5338..53651622924267.8115373-CDS-S-dermatodea_contig12930:5338..5365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 5339..5365 -
1694079137.9350996-CDS-S-dermatodea_contig12930:5338..53651694079137.9350996-CDS-S-dermatodea_contig12930:5338..5365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12930 5339..5365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12930.1781.1prot_S-dermatodea_contig12930.1781.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12930 539..5365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12930.1781.1

>prot_S-dermatodea_contig12930.1781.1 ID=prot_S-dermatodea_contig12930.1781.1|Name=mRNA_S-dermatodea_contig12930.1781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=257bp
IAGKDNVHQVPSVSVSWGGVTVVERTLALMQKAVEVDSSWRFFVNLGHED
YPAASQAEMRKWLKTKPDGTNFIKCWPIEGHDFFGQMERHDSRVKDVHVD
DFMGGVREYRSLAGKPGSQERAEPDYKFFKSLQQTMLSRQLSHYAVFSPE
ARRLLLYMATSKAPDELYFPTLTQLDSRFSSMATCDDTRHFSYWIRPGGS
WHPEYLTLDHLPIVMNATEFYIRKVEEGQGSGNLLDVLDLLREGRPLETT
LPILKA*
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mRNA from alignment at S-dermatodea_contig12930:539..5365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12930.1781.1 ID=mRNA_S-dermatodea_contig12930.1781.1|Name=mRNA_S-dermatodea_contig12930.1781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4827bp|location=Sequence derived from alignment at S-dermatodea_contig12930:539..5365- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGCGGGAAAAGATAATGTGCATCAGGTGAGGAAGGCTCTGTCCAACCA
ATCACACGATACGAGATGATGTTGTACGGTTTCATTACGGTTTCATTATG
ATGTTTTATTCGGAGCGGCCGATGACGTTGTGTATGGATCGGTTTTTGTG
TACAACAAGGTCCAGCCGGGAAGGTAATGAATGTCCTATCCCGATGAATT
ATTAATATTAATAGTTCATGGGATAGTATATATACTTCGTATACAGCACC
TGGTGGTACAATTTTCTGTGTTCTTTTATCTTTTGTATAAAAAAACAGAC
TGAAATGCTCTTTTTTTTTTTTTTTACAGCATGACCTTGTTTATGACCAC
AGCTCCGTCGTCAGATCTCGCTCCTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTAAATTTTTTTTTTTTACCTCCCACAACACATATTT
TTTTTTTTTTTTTNNNNNNNNNNAATATACTTTTTTTTTTTTTTACATGC
ATGTATTTTTTTTTTAGCATAGAAACATCGTAAAATTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCATATCAGCTTTTTTGGCGAAAACTCCTTCATCACA
CGCGCAACACACACTACTATCTATAGTACGTTGTACTACAGTATTATCAG
TGCTGCTGTACTACTAGCTGATGCAGTTGCTCTATTATACCTGGTAGTCT
TTTACTCAAACCGTTATTTTTTTTCATATATGTTTATTAAAAATAACAAA
AAAAGAGTTTTTGTCAGTAAAGTCACTCACCCCACAAACTGCTGTAAAAT
GGTAGAATGATCTTGCTGTGCTGCGTTATTGCTGCCATGCGCTAATTGCT
CTGCTGCGTTAATTGCTGTGCTGCCCGCGACGCGCTTCGCGTGGCCGCAG
GTGCCCTCCGTGAGCGTGAGTTGGGGCGGTGTGACCGTGGTGGAGAGGAC
GCTGGCGTTGATGCAGAAGGCCGTCGAGGTGGACAGCTCGTGGCGATTCT
TTGTCAACCTGGGACACGTGAGATATGGGAGAGGCCGGGGGGGGGCATTC
TAACATTATTACAATGACACCATGAGCATTACAGTACATCGTATATAGCG
TAGGCTTCCACTGAGTTAGTATAGTTAGCTTGGGCCATCTCTCTCCTCTA
CCAAAAATATTTGGCCCCAATGCTACTACAACTGCTGTATTAATACTTGG
CAGTAGTTCTGTGCTATATACATACGAAGTATTTCCTGTTTTCAGGGGGT
AGTTGTATTTTCCACGATATCCCTGGGAACAAGGACACTCACTGCTACCA
TAGCCATTCAGCATCATACTGTACTATAATATTAATATTATTACAGTATA
ACATGGAACCTATGGCAATAGTATAATAAACACGCAACGTACGCCTCCAT
AGATGTAAGATACTCTATCATAGCTTGGACCAGCTTCCCTTGAAAAAAGG
TGAGACCCCAACGCTCGCTCGCTCGCTCTTACATGTCTTTGAAATCACTA
TCAAATCACTCATTTTTTTAGATTACTTGACCTTTTTTTTTTAATACTAT
TATCACGACAGTAGTACAGTATCATACGATAAGTTGGTGGCCACAGCTAC
GCCCATGTGGTTGGTTTGCGTCGCTTTGAGGAGAGCCCCCCGGTGGCAGC
GAGCGAGCTTTGGGGTCCAACTTTTTTGCGGAAAGGGAAGAGCCCCCCCC
CCCCACCCCCCTGGAAACTGAGACCTACAACCCCCCTCCCTGCCTTTGAG
GCTCGAGGTGGGGTTGGTCTGGGTACGGTGGTGGGCTCCTGTGGCATGGA
GATGTATGTGTACACGAATTTTAGATACATGTGGGTGTTTTTTTAACCCT
TTTGTTGCTATGAAATTTGTATTATATGTATATGTCTATTACTGTAATGG
GGGGCTAAAACGACGAAAAACTATCTCTCCATGCCGGCCGACAACTACAG
CCCCGCTTCCCTTGGGCTCCGTTCTCTCTCGTTCCTGCGTCAAAACCCAT
GGGGTTCCCCGGGATTCCGCTTCAAAAGCACGCCTCATTACATACATGCT
AACCGGCGCTCCAAACAGGGGGCTAGTACCAAAATAGCTGCATTCCTAAC
TGTTTTCTTGATACTAGTTTTTTCTCCTTTTTTTGTTTTTGTTGCTCACG
GCCGTGTGTGTGTGTGTGTGCCTGTCGTTACAGGAGGACTACCCCGCTGC
CTCCCAGGCGGAAATGCGGAAATGGCTCAAGACTAAGCCTGACGGGACTA
ACTTCATAAAGTGCTGGCCCATCGAAGGTCACGACTTCTTCGGGCAAATG
GAGCGACACGACTCGAGAGTGAAGGACGTGAGTTCAGTCGGTCGATCGGT
GGAATAAGTTCTCCTTGCTTTGTTCACGATAATAGTTGTTGCTCATTCTT
GATTCGATTTGATATATATGTAATGTATACAAGTATGCTGTACCTGTTGT
ACACATGCATATAAATATCCTATTTTATTGGGGGTTTTTTTGCTTTTATG
AAAAAAAAAAACTATTTATATAATTATATTGTTGTTGCACTGCTGTACAA
AAAGCAGTAGTACTTGTAACATATTTTTAATGATGCGCACTTTCGTAGTG
AACAAATGCTTGCTTCTCTATGAAGGTTTTTTGTTTACGTTTATTTTTAT
TTTTCTGCCGTAAGCCTTGCGTAAGCGCTACTATTTTAGTAGTGATAAGA
CACAGCCTTACTCTACCCTTGCTTCCGCTCGTTATCGGTACCAACGCAAA
CGGGATAGGTGCACGTGGACGACTTTATGGGGGGAGTGCGGGAGTACCGA
AGCCTGGCAGGGAAGCCCGGATCTCAGGAACGAGCTGAACCGGTACGTTG
AAACCCGTGGAGGCGTTTTTTTAGTTTCGCTAATCTACCCGTGTTGCCTA
ATCGGAAGGCGGGGGGGGGTTGTACTCGTGTTTCAATGCATGTCGTATGA
TATCAGTCATGAGAGACCACGCATCCCAAAAATGCCGGGACGGAGCGATG
TGAGATATGGCAATTTTTCGTTTGCCAGGCTTCGCGTCACAAGAGGATGT
TACTTACGCCAGCTTTAAACAAATTATTATATTATTAGGAAATAGACTGT
GCGGTTTCAAACCGTCGTCTTTTGGTTCAACCCCCCCCCCTCCCTAAAAA
CGCCTCTGTAACCTCAGGACTACAAGTTTTTCAAGTCGCTCCAGCAGACG
ATGCTGTCGCGGCAGCTCTCGCACTACGCCGTCTTCTCGCCCGAGGCGCG
GAGGCTGCTTCTGTACATGGCCACCTCGAAGGCTCCGGATGAGCTCTACT
TCCCCACTCTTACCCAACTGGACTCGCGGTTCTCTTCCATGTGAGCGTTT
TAATATGTTTTATTTTGTTTTTGAAAATATGTATAGAGAGCTTTACCTGT
AGGCAGTCTTTCTTCCCTTATTATATGAGGGTTTGTTTTTCGCTTTATTA
CTGTATAGCCTTATAGAAAATATAGGTATAGATCTGTACGATTTTAATAC
TACTGTCTGTAGTATCATAGGTCCATGTGAAAGCGTGTGTGTTGAATTTT
ATTTTATTTGAGATTTTGCCTAGTATTATTTTTTTGCTGTAGTAGCCACG
CTAGCTACGGTTAATCGTGAGGGGTGTATTGGCAGGAAGTGCATCTGTAT
ATATACTGTACTGTATTCAGGTCATGAAATTTCGGCAGCGGGGGGGGGGG
TGGAGGTTTTATGGCATCGTGCGTAACGTAAAGCCTCCATACAATAGGTG
TGTACAACAGTAAGTAGCTTGGACCTTGTTGAAAACGTGGGAAACCCACG
CTCGCTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGTTCGGAAAGCTT
TCGAAACCCGTACCCCCCCCACTCCTGTTTAATACATCCACTACAAAGAA
AACTTCAGGAGCCTACNNNNNNNNNNTATTTGGATGGTGTTTTTGGGGGG
GGTGGGGTGGGGGGGTGTGTTGTTTGTTTGGGTTCTCGTCTTTTTTTTTT
TTTTTTTTTTTTTTGTAGGGGGGGGAGGTGTTCGGAAAGCTTTCGAAACA
CGTACGCACGCAACTACTGTATAATACATCCACTACAAGAAAAACTTCAG
GAGCCTACTCTGTATCCCTATGAAAAAACTTGCAAAGCGCTATCCATTTA
TAAAGATATAATATATACTATGGTACCCAAACTAAGATGTTAATATAAAA
ACGGGAGGGAGGGGACAAAACCATCGAAATTATAAGTGTGTTTATGGTAC
CATGTATGGGTGTATGTTTATTTTTGCAATGCGACAGGGCGACCTGCGAT
GACACGAGACATTTCTCCTACTGGATACGGCCCGGAGGCAGCTGGCATCC
GGAGTACCTTACCCTCGACCATCTCCCTATCGTGAGTGTTCTTATCATTT
ATTTATTTATTTTTGTCATTGGTGAATGTCTTGTGTATTTCTCTTTGCCG
TTTCTGTTTGTTGTGTGTTGTGTTGTGGTATCTGTATCTGCGTCTTGTCG
GACGTGTTTTTGTGTCTTGTGTGCGTTGGCAAAGTGGCGGGGGCGACGGG
TGCTCGAGCGAACGCGCGAGCGAGCGAAGCGGTCGACCGCGGCGGCCGAA
ATCGTTATGAATAGCGGGGCCTCAGTTTATTATAGACGGTTGGCTCTTGT
ATTAATTAATATGGATATATACCGGTTTTTATCTCTTGGGCGCAGGTGAT
GAACGCGACCGAGTTTTACATTCGCAAGGTGGAAGAAGGCCAAGGGTCCG
GGAACCTCCTCGACGTCCTCGACCTGCTCCGGGAGGGGCGCCCGCTTGAG
ACCACGCTGCCCATCCTCAAAGCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12930:539..5365-

>mRNA_S-dermatodea_contig12930.1781.1 ID=mRNA_S-dermatodea_contig12930.1781.1|Name=mRNA_S-dermatodea_contig12930.1781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at S-dermatodea_contig12930:539..5365- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGCGGGAAAAGATAATGTGCATCAGATTGCGGGAAAAGATAATGTGCA
TCAGGTGCCCTCCGTGAGCGTGAGTTGGGGCGGTGTGACCGTGGTGGAGA
GGACGCTGGCGTTGATGCAGAAGGCCGTCGAGGTGGACAGCTCGTGGCGA
TTCTTTGTCAACCTGGGACACGTGCCCTCCGTGAGCGTGAGTTGGGGCGG
TGTGACCGTGGTGGAGAGGACGCTGGCGTTGATGCAGAAGGCCGTCGAGG
TGGACAGCTCGTGGCGATTCTTTGTCAACCTGGGACACGAGGACTACCCC
GCTGCCTCCCAGGCGGAAATGCGGAAATGGCTCAAGACTAAGCCTGACGG
GACTAACTTCATAAAGTGCTGGCCCATCGAAGGTCACGACTTCTTCGGGC
AAATGGAGCGACACGACTCGAGAGTGAAGGACGAGGACTACCCCGCTGCC
TCCCAGGCGGAAATGCGGAAATGGCTCAAGACTAAGCCTGACGGGACTAA
CTTCATAAAGTGCTGGCCCATCGAAGGTCACGACTTCTTCGGGCAAATGG
AGCGACACGACTCGAGAGTGAAGGACGTGCACGTGGACGACTTTATGGGG
GGAGTGCGGGAGTACCGAAGCCTGGCAGGGAAGCCCGGATCTCAGGAACG
AGCTGAACCGGTGCACGTGGACGACTTTATGGGGGGAGTGCGGGAGTACC
GAAGCCTGGCAGGGAAGCCCGGATCTCAGGAACGAGCTGAACCGGACTAC
AAGTTTTTCAAGTCGCTCCAGCAGACGATGCTGTCGCGGCAGCTCTCGCA
CTACGCCGTCTTCTCGCCCGAGGCGCGGAGGCTGCTTCTGTACATGGCCA
CCTCGAAGGCTCCGGATGAGCTCTACTTCCCCACTCTTACCCAACTGGAC
TCGCGGTTCTCTTCCATGACTACAAGTTTTTCAAGTCGCTCCAGCAGACG
ATGCTGTCGCGGCAGCTCTCGCACTACGCCGTCTTCTCGCCCGAGGCGCG
GAGGCTGCTTCTGTACATGGCCACCTCGAAGGCTCCGGATGAGCTCTACT
TCCCCACTCTTACCCAACTGGACTCGCGGTTCTCTTCCATGGCGACCTGC
GATGACACGAGACATTTCTCCTACTGGATACGGCCCGGAGGCAGCTGGCA
TCCGGAGTACCTTACCCTCGACCATCTCCCTATCGGCGACCTGCGATGAC
ACGAGACATTTCTCCTACTGGATACGGCCCGGAGGCAGCTGGCATCCGGA
GTACCTTACCCTCGACCATCTCCCTATCGTGATGAACGCGACCGAGTTTT
ACATTCGCAAGGTGGAAGAAGGCCAAGGGTCCGGGAACCTCCTCGACGTC
CTCGACCTGCTCCGGGAGGGGCGCCCGCTTGAGACCACGCTGCCCATCCT
CAAAGCGTGAGTGATGAACGCGACCGAGTTTTACATTCGCAAGGTGGAAG
AAGGCCAAGGGTCCGGGAACCTCCTCGACGTCCTCGACCTGCTCCGGGAG
GGGCGCCCGCTTGAGACCACGCTGCCCATCCTCAAAGCGTGA
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