mRNA_S-dermatodea_contig12922.1779.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12922.1779.1
Unique NamemRNA_S-dermatodea_contig12922.1779.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12922.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12922contigS-dermatodea_contig12922:1687..2700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.6786642-CDS-S-dermatodea_contig12922:1688..17511622924267.6786642-CDS-S-dermatodea_contig12922:1688..1751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12922 1689..1751 -
1694079137.8511007-CDS-S-dermatodea_contig12922:1688..17511694079137.8511007-CDS-S-dermatodea_contig12922:1688..1751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12922 1689..1751 -
1622924267.6886075-CDS-S-dermatodea_contig12922:2343..27001622924267.6886075-CDS-S-dermatodea_contig12922:2343..2700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12922 2344..2700 -
1694079137.8620465-CDS-S-dermatodea_contig12922:2343..27001694079137.8620465-CDS-S-dermatodea_contig12922:2343..2700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12922 2344..2700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12922.1779.1prot_S-dermatodea_contig12922.1779.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12922 1689..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12922.1779.1

>prot_S-dermatodea_contig12922.1779.1 ID=prot_S-dermatodea_contig12922.1779.1|Name=mRNA_S-dermatodea_contig12922.1779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
EEERAASEGRVEDLRKELAQACKASTDAAGQIERLTAQVESSREGASAEA
ETLREQAKAAEEARAEALKRAGSLEMELEGHVVATRQAAEEADSRTETVR
SELNALRERAEGAEARVEKLSTKLHTLVPMCKKMQHKKDV
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mRNA from alignment at S-dermatodea_contig12922:1687..2700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12922.1779.1 ID=mRNA_S-dermatodea_contig12922.1779.1|Name=mRNA_S-dermatodea_contig12922.1779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig12922:1687..2700- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGAGAGGGCGGCCAGTGAAGGTCGCGTAGAAGATCTCCGCAAGGA
GTTGGCGCAGGCGTGTAAGGCATCGACGGACGCCGCGGGTCAGATCGAGC
GACTCACCGCCCAGGTCGAGTCCTCCCGGGAAGGGGCGTCGGCGGAAGCA
GAGACTTTGCGCGAGCAGGCTAAGGCGGCCGAGGAAGCAAGGGCGGAGGC
TTTGAAGAGGGCGGGATCTCTGGAGATGGAGTTGGAGGGGCATGTCGTGG
CGACACGCCAAGCGGCCGAGGAGGCCGATTCAAGGACCGAGACCGTCCGC
TCCGAGTTGAACGCCCTGCGAGAGAGGGCGGAGGGCGCGGAGGCTAGGGT
CGAGAAGGTGAGGAGCCGTGCTAAGTGATTTCCTTGTCGTGGCGTGGGTT
GTCGGGCGGGGGCGGGGGCGGGGGGCGAACCAGGCAGCGGTTGGGGACTC
GGTTGCATCGTCGATGCTGTTGTCAAAACCGTTTTTTTGTTTCGCTTGGT
GTTTTCTCTGCGTCGGGTACGCGATAGATAGCCTGCCTGTATGCGTTGAA
GGGTTGTTTTGTACGTGCTGCTGCCAAATCTGGTGTTGTGTGTGTTGAGA
ACCAGGCCGCTTGTCATGCGACGGCGTACTTCGATTACAAATATGGTTCC
TGGGTCTTGCATCGCTTTCACGGGACAAAGGCTGGGGGATGCGTTGATGT
ATGATCGCGGGGCCGGCGAGCGAGGCAGGGGTTCCGTTGTGCGTCCCGTT
ACGTTTTTATCCTCGCTGCCTGGTCCCAAAGGTGCAGTTACCCCTGAGGA
AGCCTCCGGAACACGCCCCATGGCGCGCCGTCATTAGCGCCACGACCTTT
CGCGTAGGTCTCGTCGAAGCACCCTATAATAACAGCGAAAACCCCCCTCC
CCCCCCTTCCCCTACACCGCCTTCCTCGCCACTTGTCGAACCGGCGCAGC
TGTCAACAAAGCTCCATACCCTGGTACCCATGTGCAAGAAGATGCAGCAC
AAAAAGGATGTGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12922:1687..2700-

>mRNA_S-dermatodea_contig12922.1779.1 ID=mRNA_S-dermatodea_contig12922.1779.1|Name=mRNA_S-dermatodea_contig12922.1779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig12922:1687..2700- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGAGAGGGCGGCCAGTGAAGGTCGCGTAGAAGATCTCCGCAAGGA
GTTGGCGCAGGCGTGTAAGGCATCGACGGACGCCGCGGGTCAGATCGAGC
GACTCACCGCCCAGGTCGAGTCCTCCCGGGAAGGGGCGTCGGCGGAAGCA
GAGACTTTGCGCGAGCAGGCTAAGGCGGCCGAGGAAGCAAGGGCGGAGGC
TTTGAAGAGGGCGGGATCTCTGGAGATGGAGTTGGAGGGGCATGTCGTGG
CGACACGCCAAGCGGCCGAGGAGGCCGATTCAAGGACCGAGACCGTCCGC
TCCGAGTTGAACGCCCTGCGAGAGAGGGCGGAGGGCGCGGAGGCTAGGGT
CGAGAAGGAGGAGGAGAGGGCGGCCAGTGAAGGTCGCGTAGAAGATCTCC
GCAAGGAGTTGGCGCAGGCGTGTAAGGCATCGACGGACGCCGCGGGTCAG
ATCGAGCGACTCACCGCCCAGGTCGAGTCCTCCCGGGAAGGGGCGTCGGC
GGAAGCAGAGACTTTGCGCGAGCAGGCTAAGGCGGCCGAGGAAGCAAGGG
CGGAGGCTTTGAAGAGGGCGGGATCTCTGGAGATGGAGTTGGAGGGGCAT
GTCGTGGCGACACGCCAAGCGGCCGAGGAGGCCGATTCAAGGACCGAGAC
CGTCCGCTCCGAGTTGAACGCCCTGCGAGAGAGGGCGGAGGGCGCGGAGG
CTAGGGTCGAGAAGCTGTCAACAAAGCTCCATACCCTGGTACCCATGTGC
AAGAAGATGCAGCACAAAAAGGATGTGCTGTCAACAAAGCTCCATACCCT
GGTACCCATGTGCAAGAAGATGCAGCACAAAAAGGATGTG
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