mRNA_S-dermatodea_contig979.17767.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig979.17767.1
Unique NamemRNA_S-dermatodea_contig979.17767.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig979.17767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig979contigS-dermatodea_contig979:15875..17108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size447
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig979.17767.1prot_S-dermatodea_contig979.17767.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig979 15875..17108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.2283545-CDS-S-dermatodea_contig979:15874..159601622925431.2283545-CDS-S-dermatodea_contig979:15874..15960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 15875..15960 -
1694079928.9555297-CDS-S-dermatodea_contig979:15874..159601694079928.9555297-CDS-S-dermatodea_contig979:15874..15960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 15875..15960 -
1622925431.240846-CDS-S-dermatodea_contig979:16106..161841622925431.240846-CDS-S-dermatodea_contig979:16106..16184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16107..16184 -
1694079928.9664419-CDS-S-dermatodea_contig979:16106..161841694079928.9664419-CDS-S-dermatodea_contig979:16106..16184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16107..16184 -
1622925431.2547412-CDS-S-dermatodea_contig979:16365..164371622925431.2547412-CDS-S-dermatodea_contig979:16365..16437Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16366..16437 -
1694079928.9773755-CDS-S-dermatodea_contig979:16365..164371694079928.9773755-CDS-S-dermatodea_contig979:16365..16437Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16366..16437 -
1622925431.2671802-CDS-S-dermatodea_contig979:16774..169031622925431.2671802-CDS-S-dermatodea_contig979:16774..16903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16775..16903 -
1694079928.9877949-CDS-S-dermatodea_contig979:16774..169031694079928.9877949-CDS-S-dermatodea_contig979:16774..16903Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 16775..16903 -
1622925431.2803736-CDS-S-dermatodea_contig979:17026..171081622925431.2803736-CDS-S-dermatodea_contig979:17026..17108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 17027..17108 -
1694079928.997978-CDS-S-dermatodea_contig979:17026..171081694079928.997978-CDS-S-dermatodea_contig979:17026..17108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 17027..17108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig979.17767.1

>prot_S-dermatodea_contig979.17767.1 ID=prot_S-dermatodea_contig979.17767.1|Name=mRNA_S-dermatodea_contig979.17767.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=149bp
MPTGHIPPQLGNLSALEILDLRSNKLNELSNFIFIPRQIRIALLLAGPIP
PELRSLSALEYLDLDDNQLSGPIPKELGALSMLETLLLHGNKLTGEIPAS
LGQLVKLETLVLTENKLSGECPIPPELGKLAALKALLLWSNQLTGEKIC
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mRNA from alignment at S-dermatodea_contig979:15875..17108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig979.17767.1 ID=mRNA_S-dermatodea_contig979.17767.1|Name=mRNA_S-dermatodea_contig979.17767.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1234bp|location=Sequence derived from alignment at S-dermatodea_contig979:15875..17108- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTACAGGACACATCCCGCCTCAGCTAGGAAATCTCAGCGCGTTGGA
GATCCTCGATCTCCGCTCGAACAAGTTGAACGGTGAGCCGAGAGGGCCAA
ACAGCAATTTTTACTCTTCCGACTTCTGTAGAATATTCAGGCATGAATCC
CGCCGATGCGTGGGCGGGACAAGATCTACGGAGATCGATGATCTAGAAAA
ATGAGAGCTGAGTAATTTTATTTTTATTCCCCGCCAAATTCGTATTGCTC
TTCTGCTTGCAGGCCCCATCCCGCCGGAGCTAAGAAGCCTCTCAGCGCTA
GAGTACCTCGACCTTGACGACAACCAGCTGAGCGGTGAGTTACTTCAAAG
GCAAAGTTTTTTCGATCAGATTTCTGGATGAATCCTGCCGATGCCTACGC
GGGATTCATGCATGTTCAGAACTCGAAATAAAATACTCACCATCTAGCTT
GTTGTTGGCGAGGATGAGGTACTCGAGGGCGCCAAGCTGTCCGAGCTGCG
CCGGAATGGGGCCTGTAGATGAACGAGTCAACGCAGGGCGTGAGGAAAAA
CAAAAAGATATCCCGCGAGTTCTGAAATTTCGTACTCACCCACGCGTGCG
CGGGATTCATGCATGATTCTATAGAAGTCGAGTTTAATATTGTATTTTCC
CCCGCTTTGTTTCTTGTACAGGACCCATCCCCAAGGAGCTGGGAGCGCTT
AGTATGCTGGAGACGCTTTTGCTCCACGGCAACAAGCTCACAGGTGACAG
AAAAAGAACCGAAAAAGATTGGGAGAAAGTATACTTTTCTTCACTACATG
AATCCCGCCGATGCGTGGGCGGGACAAGATCTACGGAGATCGATGCTCTG
GAAAAAAAAAAAAATTGTTCAACGATACCACCTACGAACCAAACGACCTG
TCCTTCCCCCCAAATAACATGCAGGCGAAATCCCGGCGTCGCTAGGACAG
CTCGTCAAGCTGGAAACGCTCGTCCTCACCGAAAACAAACTCAGCGGTGA
GTGTCTCTGACATATTCGACTTGGACACGTCACACCAGATTTTGCTTGAA
TCCCGCCTATGCGTGGGTGAGTAGGTGGTCTAGAATGTCGGCGAAATTAG
CTTTGTTTCCTCCCGCTAAAATGTTCAAATATTCTCTTCCGATTGCAGGC
CCCATCCCGCCGGAGCTGGGAAAGCTCGCAGCACTGAAGGCTCTCCTGCT
TTGGTCTAATCAGCTAACTGGTGAGAAAATATGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig979:15875..17108-

>mRNA_S-dermatodea_contig979.17767.1 ID=mRNA_S-dermatodea_contig979.17767.1|Name=mRNA_S-dermatodea_contig979.17767.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig979:15875..17108- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTACAGGACACATCCCGCCTCAGCTAGGAAATCTCAGCGCGTTGGA
GATCCTCGATCTCCGCTCGAACAAGTTGAACGATGCCTACAGGACACATC
CCGCCTCAGCTAGGAAATCTCAGCGCGTTGGAGATCCTCGATCTCCGCTC
GAACAAGTTGAACGAGCTGAGTAATTTTATTTTTATTCCCCGCCAAATTC
GTATTGCTCTTCTGCTTGCAGGCCCCATCCCGCCGGAGCTAAGAAGCCTC
TCAGCGCTAGAGTACCTCGACCTTGACGACAACCAGCTGAGCGAGCTGAG
TAATTTTATTTTTATTCCCCGCCAAATTCGTATTGCTCTTCTGCTTGCAG
GCCCCATCCCGCCGGAGCTAAGAAGCCTCTCAGCGCTAGAGTACCTCGAC
CTTGACGACAACCAGCTGAGCGGACCCATCCCCAAGGAGCTGGGAGCGCT
TAGTATGCTGGAGACGCTTTTGCTCCACGGCAACAAGCTCACAGGACCCA
TCCCCAAGGAGCTGGGAGCGCTTAGTATGCTGGAGACGCTTTTGCTCCAC
GGCAACAAGCTCACAGGCGAAATCCCGGCGTCGCTAGGACAGCTCGTCAA
GCTGGAAACGCTCGTCCTCACCGAAAACAAACTCAGCGGTGAGTGCGAAA
TCCCGGCGTCGCTAGGACAGCTCGTCAAGCTGGAAACGCTCGTCCTCACC
GAAAACAAACTCAGCGGTGAGTGCCCCATCCCGCCGGAGCTGGGAAAGCT
CGCAGCACTGAAGGCTCTCCTGCTTTGGTCTAATCAGCTAACTGGTGAGA
AAATATGTGCCCCATCCCGCCGGAGCTGGGAAAGCTCGCAGCACTGAAGG
CTCTCCTGCTTTGGTCTAATCAGCTAACTGGTGAGAAAATATGT
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