mRNA_S-dermatodea_contig97685.17750.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97685.17750.1
Unique NamemRNA_S-dermatodea_contig97685.17750.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.040e-19
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    7 RETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            R  +VYERAIANVPPV EKR+WRRYIYLWINYALFEELQAED QRTR
Sbjct:  338 RTREVYERAIANVPPVLEKRFWRRYIYLWINYALFEELQAEDAQRTR 384
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A2H1BXI1_FASHE (Uncharacterized protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BXI1_FASHE)

HSP 1 Score: 80.1 bits (196), Expect = 3.740e-18
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   19 VYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            +YERA+AN+PP+ EKRYWRRYIYLW+NYAL+EEL  ED +RTR
Sbjct:   13 IYERAVANIPPIKEKRYWRRYIYLWLNYALYEELAVEDIERTR 55
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A183WT90_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183WT90_TRIRE)

HSP 1 Score: 80.5 bits (197), Expect = 5.060e-18
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   19 VYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            +YERAIANVPP+ EKRYWRRYIYLW+NYAL+EEL A D +RTR
Sbjct:   13 IYERAIANVPPIKEKRYWRRYIYLWLNYALYEELTAADMERTR 55
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A438J528_VITVI (Crooked neck-like protein 1 n=5 Tax=rosids TaxID=71275 RepID=A0A438J528_VITVI)

HSP 1 Score: 84.3 bits (207), Expect = 8.400e-18
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 SRETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            +R  +VYERAIANVPP  EKRYW+RYIYLWINYAL+EEL+AED +RTR
Sbjct:  356 ARTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELEAEDAERTR 403
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A7R9HK38_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9HK38_9NEOP)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    7 RETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            RET  YERAIANVPP  EK++WRRYIYLWINYALFEEL+AEDE+RTR
Sbjct:  592 RET--YERAIANVPPTKEKQFWRRYIYLWINYALFEELEAEDEERTR 636
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A1U8AGH2_NELNU (crooked neck-like protein 1 isoform X1 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8AGH2_NELNU)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 RETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            R  +VYERAIANVPP AEKRYW+RYIYLWINYAL+EEL AED +RTR
Sbjct:  358 RIREVYERAIANVPPAAEKRYWQRYIYLWINYALYEELDAEDMERTR 404
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A2R6WSX9_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WSX9_MARPO)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 YSRETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            + R  +VYERAIANVPP  EKRYW+RYIYLWINYAL+EEL+AED  RTR
Sbjct:  355 HERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELEAEDTDRTR 403
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A1Y1IHX4_KLENI (Crooked neck protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHX4_KLENI)

HSP 1 Score: 81.3 bits (199), Expect = 1.340e-17
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   19 VYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            VYERAIAN+PP  EKRYW+RYIYLWINYAL+EEL+A+D +RTR
Sbjct:   54 VYERAIANIPPAEEKRYWQRYIYLWINYALYEELEADDPERTR 96
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A1J3DRI7_NOCCA (Pre-mRNA-splicing factor clf1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DRI7_NOCCA)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-17
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 RETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            R  +VYERAIANVPP  EKRYW+RYIYLWINYALFEE++ +D +R R
Sbjct:   29 RIREVYERAIANVPPAQEKRYWQRYIYLWINYALFEEIETKDVERAR 75
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BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Match: A0A061QTJ9_9CHLO (Crooked neck n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QTJ9_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.510e-17
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 YSRETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR 147
            + R  +VYERAI+N+PP  EKR+W+RYIYLWINYAL+EEL+AEDEQRTR
Sbjct:  128 HERVREVYERAISNIPPGQEKRFWQRYIYLWINYALYEELEAEDEQRTR 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97685.17750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC4_ECTSI2.040e-1987.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2H1BXI1_FASHE3.740e-1874.42Uncharacterized protein n=1 Tax=Fasciola hepatica ... [more]
A0A183WT90_TRIRE5.060e-1879.07Uncharacterized protein n=1 Tax=Trichobilharzia re... [more]
A0A438J528_VITVI8.400e-1877.08Crooked neck-like protein 1 n=5 Tax=rosids TaxID=7... [more]
A0A7R9HK38_9NEOP1.170e-1782.98Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]
A0A1U8AGH2_NELNU1.170e-1780.85crooked neck-like protein 1 isoform X1 n=5 Tax=Mes... [more]
A0A2R6WSX9_MARPO1.170e-1775.51Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A1Y1IHX4_KLENI1.340e-1779.07Crooked neck protein n=1 Tax=Klebsormidium nitens ... [more]
A0A1J3DRI7_NOCCA1.380e-1772.34Pre-mRNA-splicing factor clf1 (Fragment) n=1 Tax=N... [more]
A0A061QTJ9_9CHLO1.510e-1773.47Crooked neck n=1 Tax=Tetraselmis sp. GSL018 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97685contigS-dermatodea_contig97685:188..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog2880.D8LLC4
Preferred nameCRNKL1
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG1915@1,KOG1915@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.1375248-CDS-S-dermatodea_contig97685:187..3371622925430.1375248-CDS-S-dermatodea_contig97685:187..337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97685 188..337 +
1694079928.2723217-CDS-S-dermatodea_contig97685:187..3371694079928.2723217-CDS-S-dermatodea_contig97685:187..337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97685 188..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97685.17750.1prot_S-dermatodea_contig97685.17750.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97685 188..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97685.17750.1

>prot_S-dermatodea_contig97685.17750.1 ID=prot_S-dermatodea_contig97685.17750.1|Name=mRNA_S-dermatodea_contig97685.17750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
YSRETKVYERAIANVPPVAEKRYWRRYIYLWINYALFEELQAEDEQRTR*
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mRNA from alignment at S-dermatodea_contig97685:188..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97685.17750.1 ID=mRNA_S-dermatodea_contig97685.17750.1|Name=mRNA_S-dermatodea_contig97685.17750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig97685:188..337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATTCGCGCGAAACCAAGGTGTACGAGCGCGCGATAGCAAACGTCCCCCC
GGTCGCGGAGAAGCGCTACTGGCGGCGTTACATCTACCTCTGGATCAACT
ACGCCCTCTTCGAAGAGCTCCAAGCGGAGGACGAGCAGCGGACTCGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig97685:188..337+

>mRNA_S-dermatodea_contig97685.17750.1 ID=mRNA_S-dermatodea_contig97685.17750.1|Name=mRNA_S-dermatodea_contig97685.17750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig97685:188..337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATTCGCGCGAAACCAAGGTGTACGAGCGCGCGATAGCAAACGTCCCCCC
GGTCGCGGAGAAGCGCTACTGGCGGCGTTACATCTACCTCTGGATCAACT
ACGCCCTCTTCGAAGAGCTCCAAGCGGAGGACGAGCAGCGGACTCGGTGA
TATTCGCGCGAAACCAAGGTGTACGAGCGCGCGATAGCAAACGTCCCCCC
GGTCGCGGAGAAGCGCTACTGGCGGCGTTACATCTACCTCTGGATCAACT
ACGCCCTCTTCGAAGAGCTCCAAGCGGAGGACGAGCAGCGGACTCGGTGA
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