mRNA_S-dermatodea_contig975.17735.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig975.17735.1
Unique NamemRNA_S-dermatodea_contig975.17735.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.190e-32
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    4 LIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEI--VESGDRYDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIPGKLIIIFQLILPEVPWSDQNNAWQRLTLLVVMSLVAPIIAWASSLVAR 444
            L A DSWGRT+  HA+L+  P VFD  F A R  ILD+ +  +  +   D+ D  ++ETA Q   RAM + V +R   LKR + L  +AST E+KIQSFIPGKLI+IFQL+LPEV  SD      +LTLL++MS +AP ++WA+ LVAR
Sbjct:  386 LKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDT-VMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSD------KLTLLIIMSAIAPGLSWAAGLVAR 527
[Close]
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.290e-23
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 1 
Query:    4 LIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEIVES--GDRYDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIPGKLIIIFQLILPEVPWSDQNNAWQRLTLLVVMSLVAPIIAWASS 432
            L A D WGR++++HA+LSG   +F+ A+ AVR  + DE+V E++E+  G+R D  +++   + G   M      R   LK+DVD R+K ST +AKI+ FIPGKL+++FQL+LP++    Q      L LL +M  +AP++  A++
Sbjct:  358 LKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALAR-GNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ------LILLYIMCALAPLVKLATT 495
[Close]
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.340e-19
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1 
Query:    1 MLIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEIVESG---DRYDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIPGKLIIIFQLILPEVPWSDQNNAWQRLTLLVVMSLVAPIIAWASSL 435
            +L A+D W R++I HAI+SG   +F+  F A R D+ DE ++ +++ G         L        G  M   V ++ ++LK DV  R   ST  AKIQ+FIPG LI+IFQL+LPE   S     +    LL+V+  +AP  +W +++
Sbjct:  157 LLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLY----LLLVLCFIAPFWSWGAAM 300
[Close]
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.900e-19
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 1 
Query:    1 MLIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEIVESG---DRYDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIPGKLIIIFQLILPEVPWSDQNNAWQRLTLLVVMSLVAPIIAW 423
            +L A+D W R++I HAI+SG   +F+  F A R DI DE ++ +++ G         L        G  M   V ++ ++LK DV  R   ST  AKIQ+FIPG LI+IFQL+LPE   S     +    LL+V+  +AP  +W
Sbjct:  275 LLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLY----LLLVLCFIAPFWSW 414
[Close]
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.910e-18
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 LIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEI--VESGDRYDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIPGKLII 315
            L A DSWGRT+  HA+L+  P VFD  F A R  ILD+ +  +  +   D+ D  ++ETA Q   RAM + V +R   LKR + L  +AST E+KIQSFIPGKLI+
Sbjct:  342 LKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDT-IMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig975.17735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JBB0_9PHAE3.190e-3250.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN08_ECTSI6.290e-2340.00Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FWX2_ECTSI2.340e-1936.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM21_9PHAE2.900e-1938.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FST7_ECTSI1.910e-1848.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig975contigS-dermatodea_contig975:676..2811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size445
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig975.17735.1prot_S-dermatodea_contig975.17735.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig975 676..2811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.7978303-CDS-S-dermatodea_contig975:675..8041622925428.7978303-CDS-S-dermatodea_contig975:675..804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 676..804 -
1694079927.2352297-CDS-S-dermatodea_contig975:675..8041694079927.2352297-CDS-S-dermatodea_contig975:675..804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 676..804 -
1622925428.8103366-CDS-S-dermatodea_contig975:1409..14871622925428.8103366-CDS-S-dermatodea_contig975:1409..1487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 1410..1487 -
1694079927.2462842-CDS-S-dermatodea_contig975:1409..14871694079927.2462842-CDS-S-dermatodea_contig975:1409..1487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 1410..1487 -
1622925428.820252-CDS-S-dermatodea_contig975:2042..21591622925428.820252-CDS-S-dermatodea_contig975:2042..2159Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 2043..2159 -
1694079927.2663348-CDS-S-dermatodea_contig975:2042..21591694079927.2663348-CDS-S-dermatodea_contig975:2042..2159Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 2043..2159 -
1622925428.8326156-CDS-S-dermatodea_contig975:2691..28111622925428.8326156-CDS-S-dermatodea_contig975:2691..2811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 2692..2811 -
1694079927.276523-CDS-S-dermatodea_contig975:2691..28111694079927.276523-CDS-S-dermatodea_contig975:2691..2811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 2692..2811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig975.17735.1

>prot_S-dermatodea_contig975.17735.1 ID=prot_S-dermatodea_contig975.17735.1|Name=mRNA_S-dermatodea_contig975.17735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
MLIAKDSWGRTLISHAILSGSPCVFDVAFVAVRADILDEVVEEIVESGDR
YDNKLVETAKQVGGRAMESSVTKRISNLKRDVDLRAKASTFEAKIQSFIP
GKLIIIFQLILPEVPWSDQNNAWQRLTLLVVMSLVAPIIAWASSLVAR
back to top

mRNA from alignment at S-dermatodea_contig975:676..2811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig975.17735.1 ID=mRNA_S-dermatodea_contig975.17735.1|Name=mRNA_S-dermatodea_contig975.17735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2136bp|location=Sequence derived from alignment at S-dermatodea_contig975:676..2811- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCATCGCAAAGGACTCGTGGGGAAGGACGCTCATCTCGCACGCCAT
TTTGTCCGGCAGCCCTTGTGTGTTCGACGTCGCATTCGTGGCTGTCAGGG
CTGACATACTCGACGAAGTGGTGAGCCTAAATGCCCAGCTATCAGGCCGG
TGTTTTTTTGCCTCCTCTTTGCCTAGATAACCCGATTTCGTTGTTAACCC
CTCCACCCGAGTTTGTGCCTCCGCATGATGGCGCGTCGGGTTGAAGAAGC
CGCTGGGCCGCCATTCTTCGTCGGTTTTTGCTGTGCGTAGATATCCTATA
GGTATGCTCGCACCTGTTCTACATGTAAGAGCGCTTGTGATTGGTTGAAC
TTGCTCAAGCGACTGGAGTTATTGTGAAATGTCGTTGGAAGCTTTTTCAC
CCGTGGTGCTTGCTGCCCCCATGGATGAGCCCTGTATGAGTTCTGTGGAA
TATATAGACAGACAATTTTTTACTATTTCTGTCATGTACGTGCACTATGT
ACACAGAGTACGCAAATACAGTCCACCGTCCCTTTTGCTTCTATGCCTCG
CGGCGGCTGCGTTGTATTGCGAGAATGACGACTCGAGTGTACTCCCGCGT
GAATCACTAAGTCTGATCGTATGCGCCGTTGTGTTTGAAAAATATATAAC
AGGTAGAAGAGATCGTCGAGAGCGGGGACAGATACGACAACAAGCTGGTG
GAAACAGCGAAGCAGGTCGGGGGACGGGCAATGGAATCCTCCGTGACAAA
GCGAATCAGCAATCTGAAGGTAAGGCGGGGCGGCGAAATGGAGAGGCTGT
CATATAGATCTCGCTCTGTAAGTTTGAAGTATTTCTACATTCTAGGGGGC
AGGCTGCCACCGTTTAACACGTGTCGCCTACTTGAAGTACCCGTAGCGGA
TATCACAAGGAATGTAGCAACGTATCTAGCCTAGTACGTTTTGTAGGTCT
GTATTGAGTGAGGCCCAAGGGTGCACGTTTTGCGTTGCACGGCGAAGGGT
CATGGGAGCTTTGATAGAAGCCGCGTTGAGTTCCAGGACCCTCAGGTTCG
TCGCGGCGCGTGTGCTTAGCTAGCCTGCAAACTCCCCTAGACTACGGGCC
CTGAGAGCGACAGCGTAGTGCTAAGTACGAACGGATCATTGTCAACGCAT
AGTGCTAAGTACGAACGGATCATTGTCTGCGGAAAATCCTTATATCGTTG
CTTCCATCGTGCGTTACCGGCCGCGAAGATCGACAAGCAGTAGCATGGTG
ACAAGCGTGCTGGCCATCTTTTGACCTCCTCGACATTCGATTTTGCCTTG
CCGCCCCCTTCCCGCCTTTGTCAGAGAGATGTAGATCTCAGGGCGAAGGC
TTCCACTTTCGAGGCGAAGATTCAGTCCTTCATTCCGGGGAAGCTCATCA
TCGTGAGTGAATTGCAGCGCCCCGTGTTCGACGATTTCCTCCCGAGTACC
TCACGTCCGAAACAGTTGCTGTCGGAACAATACTATGTCGCGCAGTGCGA
AAGCGTATTGCTGTAGGTGGGTGGGTGTGTTGGTGCACGCTAGTTCGTGG
GTTCGGCGGCCAAAGCATACTTGTGGGTCAGCTTGAGAGAGGACTGACAT
ATGCGACCCGTCCGTCACTCTAGCCCACCGATGGTCACGGTCGTGAGAAA
TTCTCCACCGTATTCTACGTACACTAGTTGGTAGCCACGGCTACGCCCGT
GAGGTGAGCGTAGTCGTTCAACTCTAAAATCAAGTTGTTTGGCGCTTTAC
ACAAACATCTAGTTTTTGGCATCATGTTTTGGCCCCAAAAATCGTGGAGG
ATTCGTGTTATAGAAATCGTATAGGATTCGTGTTGCAGAAGTCAACTCTA
AATCGCTATTAAAAATCGGTAAAAGCGATATGGATTAATCAATATGCTTC
TCAACGCCTTGTGAGTGGTTGTGACGGTATTGCCTGTCCAATCACAGTGA
TGTGCTCGGCGCTCGACACCCAACCCTACCGCCCTCGGACGGCGTATCCT
CCGGCAGATCTTCCAGCTGATTCTGCCTGAGGTGCCGTGGAGCGATCAGA
ATAACGCCTGGCAGCGGCTGACGCTCTTGGTTGTGATGTCTCTCGTCGCG
CCTATTATCGCGTGGGCGAGCAGCCTGGTGGCCCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig975:676..2811-

>mRNA_S-dermatodea_contig975.17735.1 ID=mRNA_S-dermatodea_contig975.17735.1|Name=mRNA_S-dermatodea_contig975.17735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig975:676..2811- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCATCGCAAAGGACTCGTGGGGAAGGACGCTCATCTCGCACGCCAT
TTTGTCCGGCAGCCCTTGTGTGTTCGACGTCGCATTCGTGGCTGTCAGGG
CTGACATACTCGACGAAGTGATGCTCATCGCAAAGGACTCGTGGGGAAGG
ACGCTCATCTCGCACGCCATTTTGTCCGGCAGCCCTTGTGTGTTCGACGT
CGCATTCGTGGCTGTCAGGGCTGACATACTCGACGAAGTGGTAGAAGAGA
TCGTCGAGAGCGGGGACAGATACGACAACAAGCTGGTGGAAACAGCGAAG
CAGGTCGGGGGACGGGCAATGGAATCCTCCGTGACAAAGCGAATCAGCAA
TCTGAAGGTAGAAGAGATCGTCGAGAGCGGGGACAGATACGACAACAAGC
TGGTGGAAACAGCGAAGCAGGTCGGGGGACGGGCAATGGAATCCTCCGTG
ACAAAGCGAATCAGCAATCTGAAGAGAGATGTAGATCTCAGGGCGAAGGC
TTCCACTTTCGAGGCGAAGATTCAGTCCTTCATTCCGGGGAAGCTCATCA
TCAGAGATGTAGATCTCAGGGCGAAGGCTTCCACTTTCGAGGCGAAGATT
CAGTCCTTCATTCCGGGGAAGCTCATCATCATCTTCCAGCTGATTCTGCC
TGAGGTGCCGTGGAGCGATCAGAATAACGCCTGGCAGCGGCTGACGCTCT
TGGTTGTGATGTCTCTCGTCGCGCCTATTATCGCGTGGGCGAGCAGCCTG
GTGGCCCGGATCTTCCAGCTGATTCTGCCTGAGGTGCCGTGGAGCGATCA
GAATAACGCCTGGCAGCGGCTGACGCTCTTGGTTGTGATGTCTCTCGTCG
CGCCTATTATCGCGTGGGCGAGCAGCCTGGTGGCCCGG
back to top