mRNA_S-dermatodea_contig9703.17703.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9703.17703.1
Unique NamemRNA_S-dermatodea_contig9703.17703.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 1.110e-127
Identity = 201/279 (72.04%), Postives = 225/279 (80.65%), Query Frame = 3 
Query:    6 RDFGPAWLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALGNWGSAGAKRRRKLSGSETASQEGRGGFFGALDGGSAEFKCTASCSHGHKRCEVCHLLTRDQPPA-APAVPPWRKRID 839
            R FGPAWLV+ATF HEVWL LQHANILLNPLCQRLDR YG+ LLR+RLYWVIA VLAAYW+RE+LSM +ASPYASPLTLKMV ISS+YH+GKI LI LDA+R WSPTMGIMRLLMDHWH+SS KDVLLC+KR++LQ FDTATHA IVRDM+ WDEE+     GL R L++V+ VWAMHAI NLVT+ STAT+VVE+AK  +GNWGS   KR           Q G GG FGALDGG AEF CT SCSHGHK CEVCHLLTRD+P A AP   P RKR+D
Sbjct:  157 RRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWR------QRG-GGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 1.340e-125
Identity = 196/271 (72.32%), Postives = 219/271 (80.81%), Query Frame = 3 
Query:    6 RDFGPAWLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALGNWGSAGAKRRRKLSGSETASQEGRGGFFGALDGGSAEFKCTASCSHGHKRCEVCHLLTRDQPPAAPAVP 818
            R FGPAWLV+ATFVHEVWL LQHANILLNPLCQRLDR YGV LLR+RLYWVIA VL+AYW+RE+LSM +ASPYASPLTLKMV  SS+YH+GKI LI  DA+R WSPTMGIMRLLMDHWH+SS KD LLCVKR++LQ FDTATHA IVRDM+ WDEE+ G   GL + L++V+ VWAMHAI NLVTK STAT+VVE+AK  +GNWGS+  KR           Q G GG FG LDGG AEF CTASCSHGHK CEVCHLLTRD+P A P  P
Sbjct:  157 RRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDEESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGNWGSSSGKRPPSWR------QRG-GGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALPPPP 420
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 270 bits (691), Expect = 2.060e-80
Identity = 143/267 (53.56%), Postives = 176/267 (65.92%), Query Frame = 3 
Query:   27 LVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQA-------FDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALGNWGSAGAKRRRKLSGSETASQEG--RGGFFGALDGGSAEFKCTASCSHGHKRCEVCHLLTRDQPP 800
            LV    VHEVW+ LQH N+LLNPLCQRLDRGYG++LL+KR YWVIA VL AYW REILSM  A PY +PLT  M+ +S VYH+GKI L+ +DA+RGWSPT+GIMRLL+DHWHL S  D+++  KR ALQA       FD+ TH  IVRD++            L+R +++ + VWA+HA+ N+VT  STAT++V LAK  L  + S           + TASQ     GG   ALDGG  E  C   C HGH +C VCHLLTRD PP
Sbjct:   40 LVALLLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSVASAELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFAS-------HPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMPP 299
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A7S4KNY6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH)

HSP 1 Score: 203 bits (517), Expect = 4.740e-54
Identity = 105/189 (55.56%), Postives = 130/189 (68.78%), Query Frame = 3 
Query:   42 FVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGAL 608
            F HEVW+ +QHAN+LLNP  QRLDR YG+ALLRKR YWVIA VL+AYWARE+LSM +   Y S  T  M+++S +YHI KI L+ LDA R +SP +GIM LL+D WHL S  D L+ +KRV LQ FDTATH  IV DM+  D+E       L    + +A VW +HA+   VTKKSTAT+ VE  K  +
Sbjct:  108 FAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQGFDTATHCKIVLDMISKDKE-------LLSFAVFIAAVWFVHALACQVTKKSTATLFVETFKAVI 289
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO)

HSP 1 Score: 181 bits (458), Expect = 2.250e-43
Identity = 94/203 (46.31%), Postives = 132/203 (65.02%), Query Frame = 3 
Query:   15 GPAWL----VMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALG 611
            GPA      ++A  +HE W+ LQH N+LLNP CQRLDR YG+++LRK  +WVIA+VL  YWARE+ SM +  PY +  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ + R +LQ +DT  H FIVRD++       G   G  + L ++  VW +HA+ N V+++STAT+VVE  +  LG
Sbjct:   42 GPAGYGRAAMLALLLHEAWVTLQHGNVLLNPFCQRLDRRYGISMLRKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSTIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFQTLGTQLVSLLRFSLQGYDTMVHVFIVRDLI----HHGGLGTGYVKWLHILFLVWLLHAVLNQVSQQSTATLVVESWRYLLG 240
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A812Q1W1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO)

HSP 1 Score: 172 bits (437), Expect = 9.120e-43
Identity = 90/199 (45.23%), Postives = 123/199 (61.81%), Query Frame = 3 
Query:   15 GPAWLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALG 611
            G   L     +HE W+ LQH N+LLNP CQRLDR YG+++L+K  +WVIA+VL  YWARE+ SM +  PY S  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ + R  LQ +DT  H FIV D++       G  + L    L    VW +HA+ N  +++STAT+VVE  +  LG
Sbjct:   49 GGDGLAALLLLHEAWVTLQHGNVLLNPFCQRLDRNYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLHVLFL----VWLLHAVLNQTSQQSTATLVVESWRYILG 243
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A812Z067_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO)

HSP 1 Score: 170 bits (430), Expect = 3.570e-41
Identity = 88/194 (45.36%), Postives = 126/194 (64.95%), Query Frame = 3 
Query:   30 VMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALG 611
            ++   +HE W+ LQH N+LLNP CQRLDR YG+++L+K  +WVIA+VL  YWARE+ SM +  PY +  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ + R  LQ +DT  H FIV D++       GT +     +L +  VW +HA+ N V+++STAT+VVE  +  LG
Sbjct:   56 LLMLLLHEAWVTLQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFYTLGTQLVSLLRFLLQGYDTMVHVFIVSDLI--HHGGLGTSYVWWLHVLFL--VWLLHAVLNQVSQQSTATLVVESWRYILG 245
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A1Q9D0R3_SYMMI (Caroteno-chlorophyll a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI)

HSP 1 Score: 169 bits (427), Expect = 1.280e-39
Identity = 88/199 (44.22%), Postives = 122/199 (61.31%), Query Frame = 3 
Query:   15 GPAWLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALG 611
            G   L     +HE W+ +QH N+LLNP CQRLDR YG+++L+K  +WVIA+VL  YWARE+ SM +  PY S  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ + R  LQ +DT  H FIV D++       G  + L    L    VW +HA+ N  +++STA +VVE  +  LG
Sbjct:   49 GGDGLAALLLLHEAWVTMQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLHVLFL----VWLLHAVLNQTSQQSTAKLVVESWRYILG 243
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A7S3LJ98_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.800e-32
Identity = 80/202 (39.60%), Postives = 118/202 (58.42%), Query Frame = 3 
Query:   24 WLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPY-------ASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLL------VAGVWAMHAIGNLVTKKSTATVVVE 590
            WL +  F HE W+ LQH N+L NPLCQRLDR YG+ALL+   +W IA  L+AYW RE LSM++  P+       A   T  +V+IS +YH  K   +  DA +  SPT GIMR+++D ++L + ++V+L   R+ LQ FDT  H  I+RD+L  D  +      +    ++      +  +W +HA  N   + STA+V+V+
Sbjct:   15 WLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLKSNQHWAIAGTLSAYWCRESLSMFLCLPFLQRSNPGAISTTQYLVLISLIYHTIKSRGVRRDALQRQSPTYGIMRVVIDKFYLHTRQEVVLTAVRLFLQGFDTWIHFLILRDLLL-DSSSVSASASVSTPPIITTWLHAIFAIWVLHAAMNQYFRCSTASVMVQ 215
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BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Match: A0A6U3TV35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.530e-31
Identity = 74/191 (38.74%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:   21 AWLVMATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAYWAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMGIMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPGTRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVEL 593
            +WL      HE W+ LQH+N+L NPLCQ LDR YG+ALLR   +W IA  L+AYW RE + M++ +P+    T  +V+ S VYH  K   + LDA R +SP  GIMR+++D +HL +  + +L   R+ LQ  DT  HA I++ +  +      +   +   +  ++ +W  HA  N   + STAT++V+L
Sbjct:   61 SWLATLLLAHEYWVYLQHSNVLANPLCQHLDRQYGIALLRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQGGDTFIHAMIIKGLFVYLSST--SEMSMLPMIHWLSFIWITHAAMNQYLRCSTATIMVQL 249
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9703.17703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LAY7_ECTSI1.110e-12772.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPB7_9PHAE1.340e-12572.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836C6P6_9STRA2.060e-8053.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4KNY6_GUITH4.740e-5455.56Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A812V2L4_9DINO2.250e-4346.31CER3 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812Q1W1_9DINO9.120e-4345.23Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A812Z067_9DINO3.570e-4145.36Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A1Q9D0R3_SYMMI1.280e-3944.22Caroteno-chlorophyll a-c-binding protein n=1 Tax=S... [more]
A0A7S3LJ98_9STRA9.800e-3239.60Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U3TV35_9STRA1.530e-3138.74Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9703contigS-dermatodea_contig9703:1935..7171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.0
Seed ortholog evalue1.8e-102
Seed eggNOG ortholog2880.D8LAY7
KEGG rclassRC02233
KEGG koko:K00485,ko:K14003
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,ko04141,map00982,map01120,map04141
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
EC1.14.13.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005950.1
Exons6
Model size2459
Cds size810
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9703.17703.1prot_S-dermatodea_contig9703.17703.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9703 1967..5554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.3047097-UTR-S-dermatodea_contig9703:1934..19661622925426.3047097-UTR-S-dermatodea_contig9703:1934..1966Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9703 1935..1966 +
1694079925.3429737-UTR-S-dermatodea_contig9703:1934..19661694079925.3429737-UTR-S-dermatodea_contig9703:1934..1966Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9703 1935..1966 +
1622925426.406751-UTR-S-dermatodea_contig9703:5554..71711622925426.406751-UTR-S-dermatodea_contig9703:5554..7171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9703 5555..7171 +
1694079925.429152-UTR-S-dermatodea_contig9703:5554..71711694079925.429152-UTR-S-dermatodea_contig9703:5554..7171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9703 5555..7171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.3173738-CDS-S-dermatodea_contig9703:1966..20681622925426.3173738-CDS-S-dermatodea_contig9703:1966..2068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 1967..2068 +
1694079925.3543134-CDS-S-dermatodea_contig9703:1966..20681694079925.3543134-CDS-S-dermatodea_contig9703:1966..2068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 1967..2068 +
1622925426.335119-CDS-S-dermatodea_contig9703:2387..25661622925426.335119-CDS-S-dermatodea_contig9703:2387..2566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 2388..2566 +
1694079925.3646324-CDS-S-dermatodea_contig9703:2387..25661694079925.3646324-CDS-S-dermatodea_contig9703:2387..2566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 2388..2566 +
1622925426.3521032-CDS-S-dermatodea_contig9703:3296..33961622925426.3521032-CDS-S-dermatodea_contig9703:3296..3396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 3297..3396 +
1694079925.381216-CDS-S-dermatodea_contig9703:3296..33961694079925.381216-CDS-S-dermatodea_contig9703:3296..3396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 3297..3396 +
1622925426.3658574-CDS-S-dermatodea_contig9703:4164..43051622925426.3658574-CDS-S-dermatodea_contig9703:4164..4305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 4165..4305 +
1694079925.3928285-CDS-S-dermatodea_contig9703:4164..43051694079925.3928285-CDS-S-dermatodea_contig9703:4164..4305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 4165..4305 +
1622925426.3797102-CDS-S-dermatodea_contig9703:4669..47801622925426.3797102-CDS-S-dermatodea_contig9703:4669..4780Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 4670..4780 +
1694079925.406173-CDS-S-dermatodea_contig9703:4669..47801694079925.406173-CDS-S-dermatodea_contig9703:4669..4780Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 4670..4780 +
1622925426.3923557-CDS-S-dermatodea_contig9703:5377..55541622925426.3923557-CDS-S-dermatodea_contig9703:5377..5554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 5378..5554 +
1694079925.4188945-CDS-S-dermatodea_contig9703:5377..55541694079925.4188945-CDS-S-dermatodea_contig9703:5377..5554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9703 5378..5554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9703.17703.1

>prot_S-dermatodea_contig9703.17703.1 ID=prot_S-dermatodea_contig9703.17703.1|Name=mRNA_S-dermatodea_contig9703.17703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=270bp
MATFVHEVWLCLQHANILLNPLCQRLDRGYGVALLRKRLYWVIATVLAAY
WAREILSMWMASPYASPLTLKMVVISSVYHIGKISLIYLDAKRGWSPTMG
IMRLLMDHWHLSSAKDVLLCVKRVALQAFDTATHAFIVRDMLCWDEEAPG
TRFGLDRTLLLVAGVWAMHAIGNLVTKKSTATVVVELAKGALGNWGSAGA
KRRRKLSGSETASQEGRGGFFGALDGGSAEFKCTASCSHGHKRCEVCHLL
TRDQPPAAPAVPPWRKRID*
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mRNA from alignment at S-dermatodea_contig9703:1935..7171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9703.17703.1 ID=mRNA_S-dermatodea_contig9703.17703.1|Name=mRNA_S-dermatodea_contig9703.17703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5237bp|location=Sequence derived from alignment at S-dermatodea_contig9703:1935..7171+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCATCGCGACTTCGGACCGGCGTGGCTGGTGATGGCGACCTTCGTGCAC
GAGGTGTGGCTGTGCCTGCAGCACGCCAACATCCTGCTCAACCCGCTTTG
CCAGAGATTGGACAGGGGTTACGGCGTCGCTCTGGTGAGGATCGGGGAGG
TTTTTGAAATATTGGATACGGCTGCAAGAAGGCGTGGATGCTGCAGTGGA
CGCTTGCACTCGCTATTCGTGAATAGCCGGCGTTTGGGAGCACCCTTTTT
TCGGCGTAGAGGTTCGTGCCATCATGGCGATTATAATCCGACCACCCTTT
CCGGAGGTAGGGTTGAAGACCGAAGCCACAATCCCATGCTGTTGCTAAGC
GAAAGGCGTTCTACGACTGTGCGGCTCCGCCTCATGAACACCCGCCGTAT
CGCCTGCAAATCGTTCCCGTCGTTTGCAATCTTGATACCCAACCCCGGCG
CAGCTGAGGAAGCGGCTGTACTGGGTAATTGCCACTGTGCTGGCCGCGTA
CTGGGCTAGGGAGATACTTTCGATGTGGATGGCGTCGCCATATGCGTCGC
CGCTGACGCTTAAGATGGTGGTCATTTCTTCTGTCTACCACATCGGGAAG
ATCTCGCTGATTTATCTTGACGCCAAGCGCGGGTAAGCGAGCAAATGCGT
CGCATGGTGTTCGTCGCTGCTTCGCGAAATTGGGTTGGATTCACATGATA
CTTACAGCCCTGATCGTTGGGTGGTCCACATCTCCAACGCCGCCGCTCAC
ATATCCTAAACTAGGTAGGGGTAGGTCCTCAGGGATCGTTGTTGCTCATT
GGAGTGGGCGTGAAATATTTCTACATCGTTGGTACTTACAGGTTGGGTGG
AGCCGTGATAACTGTTGTGTTCAACGTTGCTGTTCGGAGATGCGAAACTA
GCGGTTCGTTCCTCGCTGATCCTTGTTGTTCAGGGCGGTGGGCGTATCGT
CTGTATGTCCAGGGCGGGTACATCGTGGCCCCTCTTTTTCTGGCTAGGCA
GAACCCCTCAATTGCACTTGTTCTTGGGTGTCGCATATTACGGAGAACCA
TAGTTAACAGGTCCAAATTCGTCACAAACATCACCTTAGAAGAAACCATG
TAGGCCAGAAATTATTGGGTAGTCATGGTCGATGTTGTTATATAGGCCAG
ACCTCGCGATGTTGTTTACATGAGGTAATTTTTGTTGTTTGGGTATTCAT
GGCCGGAGCAATTGGGTATTCACGGTCGTGACATTTGGTCCTCATTACTG
CGTACCTCCGTAATAGCACGAGCATGTTGGCGGCGAAGCGGTATTCAACA
TTCAATCGTGTTTTTACTACATTGCTCCGCTCCCCTCACTGCCAATACGC
GATACCCCAAAGGTGGTCGCCTACCATGGGCATAATGAGGCTCCTTATGG
ACCACTGGCACCTGTCGTCTGCAAAAGATGTGCTCCTCTGCGTTAAGAGA
GTAGCGCTGCAGGTGCGTCTAGTACAAGTCTGCCTTTGCTTTGTAGATGT
TCTTCCCTATTTAAGCTCTATGTGTGCAGCGTAAAACATACAAGGTACAC
GCCTAGGGAAGACCGGGCTCAGCCGCATGAGAAGATAAGTCGAGCCTTGA
ACAGTGAAATTGGATGTTGCTTTCTGTGGGTCTCTCGTTTTGGTGTTGTT
GCGTGGGATATGTTTGCACTATAATCACGCAACGACGTTGAGGCCGCACT
CCTAGCACTCCACCAACTTGGACTACTCCCAACTCTCCTTGTTTCCTGGA
AGTCGCTGCCGCCTAACCGCTTCACTTTCACCCGGTTTTCCCGTTTGACA
CCAACGCGGAGAAAGTTGGTTCTCCCCCGTCTTTATGTCGCTAGCTCATC
TGTTTTTTGTCACCGTTCGGTGGCAAAGTCAGCACGTCCATGTCGCTAGG
AAACGGTGCACCTTCGAGCATGACACATTTGAATGCACGATCGAAATGGT
TAAGGGTGAGAAGGGTTTACGATTTCCAATGCAAATCGGGCAGTGAAGGG
ATACATAGTGTACAAGTTACCCTTACTGCTAACATAATCGCTTCTTGAAT
TGTTTGGATATTGGCCGAAGAGCTTTCGGCGAATGCTTGCTTGCTCATCG
TTTCCTGATAAAATGATTTTTTCGGAGGTAATGCTCTCTTGCCGCCACGA
ACATGTGATTTCTCGGGTGAAACGATATGCACAACAGCGTTGTTGACCCC
TCTTTACTTGGACGTTCTACGCGGTTCCAGGCGTTCGATACTGCGACGCA
CGCTTTTATTGTGCGCGACATGCTGTGCTGGGACGAAGAAGCGCCAGGGA
CTCGGTTCGGCCTCGACCGCACCCTGCTTCTCGTCGCGGGAGTCTGGGCA
ATGCACGCTATCGGGAACCTGGTATGAACGTGTACATCAATATTTCCCGC
GGCCTGTACCGAGTACAACTGGGAGGAAGATGGTGCCTTTGGTGCATGTA
AATTGAGACGTCTCGCGCTCGCGATTCTTGTGCACCGCACGCACGTCGCA
GTTCCGCCACGGGCACCGAGTCCGAACGCTAAACTAGACGCTAAATATAC
GGTATCATTAGCAAACGAATCTCCGTCATGTGCGATGTACCTAACTCGAA
TAGATTGTCTAGGTGGATGTTTCAAAACGATCACGACCCTGCAGTCATAC
TATTTCCCATCGTGCAGGGCTATTACGCTTACTGCTTTTCCCCGTATCCT
CTGCGCGTGCCAAATCCACGTACTATCCCATTAAGGTGACAAAAAAGTCT
ACAGCAACGGTTGTGGTGGAGTTGGCCAAAGGTGCGCTTGGGAACTGGGG
AAGCGCAGGCGCGAAGCGCAGGCGTAAACTATCAGGCAGTGAAACGGTGA
GAGTACGTGTAGTGTGCAAAGCCGTAGGTCTGCACGTGCGCGGACATACG
TGCCGAAGGATTAGGCCCTCAGGGTGGCCCTTCTACCGTCATCACGACAG
CCTAAACAGTGCTGCCGGGGGGATCCGCTTTGTCATATTTGTTTTTGTTG
GGCGATTTGTCGGCGTAGTTGGACCCAAGCGATACCTAGACGTTGTGTCG
CTGCATCACTTGGCTGTTGCACACCTAAAGCCCGATGCGCTTTGGGGCTA
TTGTGAATGCGCCTAAAACAGGTCAAATGACAATGTCGGGAAAGTGCGAG
ATTGGAGCGTGTCGGACCCTCTTCGCGACCGATGCACCCATCTAAGGGGT
CGACTCTGTATTGTGCTTGGTTTGATATTTCGGAGTCGTCATCAACTCGA
TGGAGCTGGACAGCTGTAAGTGGGGCACATTTTGCTCAGTTCTGGAGGCC
TGTTGTCTTCGTGTCTGGCCTCCATTGCTCCCTTCAGACGTTCTTTTGGA
TTATTAATACCTCGTTGAAATTTTGATTTCCTCCGCTTTCGTCTCTTAAC
GATATTTGCGCTTGCTCCACCACACGAAAAATGCCTCGTTGAGGCTTCGC
AGGAAGGAAGAGGGGGGTTTTTCGGGGCTTTGGACGGCGGAAGCGCGGAA
TTCAAGTGCACAGCGAGCTGTTCACACGGCCACAAGCGTTGCGAAGTGTG
CCACCTGCTTACTAGAGACCAGCCTCCCGCCGCCCCTGCAGTCCCTCCAT
GGCGGAAACGTATTGACTAGTGCGCAAGTTATTCCGTGAGTCATTCAGGA
GGACAAGGGCATGCGAAGCGTGTCTCGTTATTTCGCATTTGGAGGAAGCT
AGTTGGTGCCCCCCCTCCTGGGTAGAGTAGCACCGGACGGCTTGAACCGG
TTTGCCCTATTTGAAGCGTCTCTTGGGTTGAAGTCATGATGTCACCCAGG
GGAATGTCCTTTAAGGCGAAAGCTGTACTGGTACAACGATTTCTCCTACG
TGAGGCTGTTTTGAGAGGGTTGTATTTCACGAAATGTCCGTAACCTTTTC
CCCTTTGCCAGAAAGTACGGCAGCAGCTTCACGAAGGGAGAAATTACGTT
CCATCCCGATACACAGCGCGTTTGCGAAACACCTTTTATTCTTGGTAGAA
CGTTTTCTTAGTGGTCCAGGACCAGTTCCAGCTGTTCTTCTCGACGAGAT
TTCTAACCCTGAGTGCCTGCCGTCCTTGTTGATGGCATGGAGGACGAAGT
ACATGGAGCTAAAGCATTGGAGCCAACATCATAGCGCACGCGTCCCCATC
GTTTCTACGCTTTGGCAGACAACCTTCAATTGGGTTTGGCAGAGTGTTGC
GCCCTTGCGCCCTTAGAGGCGTAGTGTTCACTGTGATCGGGGAGTTGGGT
CGCACGAAACAACCTGTTTTACCTGCCGTTCTTACATTCTTGCGCACCTT
CGACGACAACAAGGACAAGTCTTTCGGAACAAGAATGAAGTGTGGGCGAT
GAGTGTACGATACACCATGTGTTTGGTCGCCAAGGTGTACGTGTCTGGAG
CCGTTTAGGTTTGGCAGCTAGAGTGGTTTTGCGTGTGACTGTCGTGCGAG
ACGTTTGACGCTCCACGTTGGGTATGTAACCCAATGCTCACGCCACATAC
TGCCTCTTTCCATCTGAGTTATAATTGCAATAGGGACGGTATTCTCGGTA
TGATTTTGCTCTCCTCCCCCGCGGAAGCGACAAAGCTGTGCCTGGTAGAG
GACCTGCTATACCCACCTTCCACCAAGTTCGGCCAATAGGCTGTTCCCGA
AAACGAACCATTTCCGTTCGGTCGCAGGTGGGTTAATCTAGTTACGAGTA
CGATTTTTTGTTCGGAGATTTGGGCCGCATGTGGGTCGTTACCTTTTACA
ATTTGTTATGCCTTACTGAGAGAGTAAAGGACGTACCTACTTTCAGTTTC
CCCTGAACCAGTGTGCTTGTAAGTTAGGGACGTACATGGGAACTAGATTT
TGTTTTTTTATAAATCGGTACAAAAAGGCCACGGGGTGGTTCACCAGCGA
GTGAAAGCGCCCTCTCCAATACCTCCCGCTACTGGACTCGCCGGTATTAG
TATACTTGTAGTCACGTTTAGAGAAAATGAGTTCCACCCCAATCGTCAGG
CGAGTTTCAAAATGCTCCGAAGCATTTATCCGTGCCGTGAATCCGTCACC
GGCAGGTACTTGTATGTGTAATATGAGTATCTTATTAATTACAAGGTTTC
TGCGGCTGACACCGCAACGCCTAAATAATGACGGCGACTCCAAGGCCAAA
GAAAACGGTACGGCAGATATATACCAGGTATGTAATATCAAATAACAGAA
ACTGCCTCACAGGCGCTGTAGATGGAGGAACATGAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9703:1935..7171+

>mRNA_S-dermatodea_contig9703.17703.1 ID=mRNA_S-dermatodea_contig9703.17703.1|Name=mRNA_S-dermatodea_contig9703.17703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at S-dermatodea_contig9703:1935..7171+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACCTTCGTGCACGAGGTGTGGCTGTGCCTGCAGCACGCCAACAT
CCTGCTCAACCCGCTTTGCCAGAGATTGGACAGGGGTTACGGCGTCGCTC
TGATGGCGACCTTCGTGCACGAGGTGTGGCTGTGCCTGCAGCACGCCAAC
ATCCTGCTCAACCCGCTTTGCCAGAGATTGGACAGGGGTTACGGCGTCGC
TCTGCTGAGGAAGCGGCTGTACTGGGTAATTGCCACTGTGCTGGCCGCGT
ACTGGGCTAGGGAGATACTTTCGATGTGGATGGCGTCGCCATATGCGTCG
CCGCTGACGCTTAAGATGGTGGTCATTTCTTCTGTCTACCACATCGGGAA
GATCTCGCTGATTTATCTTGACGCCAAGCGCGGCTGAGGAAGCGGCTGTA
CTGGGTAATTGCCACTGTGCTGGCCGCGTACTGGGCTAGGGAGATACTTT
CGATGTGGATGGCGTCGCCATATGCGTCGCCGCTGACGCTTAAGATGGTG
GTCATTTCTTCTGTCTACCACATCGGGAAGATCTCGCTGATTTATCTTGA
CGCCAAGCGCGGGTGGTCGCCTACCATGGGCATAATGAGGCTCCTTATGG
ACCACTGGCACCTGTCGTCTGCAAAAGATGTGCTCCTCTGCGTTAAGAGA
GTAGCGCTGCAGGTGGTCGCCTACCATGGGCATAATGAGGCTCCTTATGG
ACCACTGGCACCTGTCGTCTGCAAAAGATGTGCTCCTCTGCGTTAAGAGA
GTAGCGCTGCAGGCGTTCGATACTGCGACGCACGCTTTTATTGTGCGCGA
CATGCTGTGCTGGGACGAAGAAGCGCCAGGGACTCGGTTCGGCCTCGACC
GCACCCTGCTTCTCGTCGCGGGAGTCTGGGCAATGCACGCTATCGGGAAC
CTGGCGTTCGATACTGCGACGCACGCTTTTATTGTGCGCGACATGCTGTG
CTGGGACGAAGAAGCGCCAGGGACTCGGTTCGGCCTCGACCGCACCCTGC
TTCTCGTCGCGGGAGTCTGGGCAATGCACGCTATCGGGAACCTGGTGACA
AAAAAGTCTACAGCAACGGTTGTGGTGGAGTTGGCCAAAGGTGCGCTTGG
GAACTGGGGAAGCGCAGGCGCGAAGCGCAGGCGTAAACTATCAGGCAGTG
AAACGGTGACAAAAAAGTCTACAGCAACGGTTGTGGTGGAGTTGGCCAAA
GGTGCGCTTGGGAACTGGGGAAGCGCAGGCGCGAAGCGCAGGCGTAAACT
ATCAGGCAGTGAAACGGCTTCGCAGGAAGGAAGAGGGGGGTTTTTCGGGG
CTTTGGACGGCGGAAGCGCGGAATTCAAGTGCACAGCGAGCTGTTCACAC
GGCCACAAGCGTTGCGAAGTGTGCCACCTGCTTACTAGAGACCAGCCTCC
CGCCGCCCCTGCAGTCCCTCCATGGCGGAAACGTATTGACTAGGCTTCGC
AGGAAGGAAGAGGGGGGTTTTTCGGGGCTTTGGACGGCGGAAGCGCGGAA
TTCAAGTGCACAGCGAGCTGTTCACACGGCCACAAGCGTTGCGAAGTGTG
CCACCTGCTTACTAGAGACCAGCCTCCCGCCGCCCCTGCAGTCCCTCCAT
GGCGGAAACGTATTGACTAG
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