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Homology
BLAST of mRNA_S-dermatodea_contig9693.17694.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI) HSP 1 Score: 221 bits (564), Expect = 7.700e-64 Identity = 114/195 (58.46%), Postives = 143/195 (73.33%), Query Frame = 3
Query: 9 AEPTPTSYHSVGGYSSLAEIGGRPGGSPSERSSSPLGPGVSHVSVS----SPTFAGETGPNDRLMACYRYSRAIRVLAVLDAVVVLYGASAFTPLILMMWGPIAGYMSSNFQLRSAYAFLFYYGLRVSWDIGWLLSGGITWIVVWVFLVTDAAASALVYFYLAMLRKCTPAEVEQLRHPATPWASAFFPLTVPGT 581
A P+ +SY S G YSS+A+ + L P H V +P+F G P++ LMAC+RYSR +RVLA+LDA++VL GASAFTPLILM+WGPIAGY++SNF+LR+A+ FLFYYGLR+SWDIGW+LSGGI W+VVWVFL TD AAS LVYF++ +L +C+ AEVE LR P T WASAFFPL+V T
Sbjct: 28 ATPSTSSYQSGGSYSSVADTHHYRQAGMGPARTERLAPSQDHTGVQFSPPAPSFPGTPRPSESLMACHRYSRVVRVLAILDAIIVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLSVGAT 222
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_005140.1 |
| Exons | 5 |
| Model size | 2203 |
| Cds size | 414 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9693.17694.1 >prot_S-dermatodea_contig9693.17694.1 ID=prot_S-dermatodea_contig9693.17694.1|Name=mRNA_S-dermatodea_contig9693.17694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
MACYRYSRAIRVLAVLDAVVVLYGASAFTPLILMMWGPIAGYMSSNFQLR SAYAFLFYYGLRVSWDIGWLLSGGITWIVVWVFLVTDAAASALVYFYLAM LRKCTPAEVEQLRHPATPWASAFFPLTVPGTLPASAS* back to topmRNA from alignment at S-dermatodea_contig9693:200..7621+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9693.17694.1 ID=mRNA_S-dermatodea_contig9693.17694.1|Name=mRNA_S-dermatodea_contig9693.17694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7422bp|location=Sequence derived from alignment at S-dermatodea_contig9693:200..7621+ (Saccorhiza dermatodea SderLu1190fm monoicous) AGTTCAACGCGGAGCCGACCCCGACATCGTACCACAGCGTGGGCGGGTAC
AGCAGCCTCGCAGAGATCGGAGGCCGTCCAGGTGAGCTACAAGTAACATT
TATATATTATCATTATTGTTATCAATTATCACACATACATTGTCACACTT
ACAACCGACCGGCCCACCAATGGTTGCCGATCCCGCCCGTGGTCAGATGA
GAAACATCGAGAGATCGAGACGAAAACCCTATGATACAGTTACAGTACGG
AATTACCTATATCTGATTATAGTACATGTGGTGCGGCCGGGGCTATTACT
ATTAATATTAATAGTCGTCGGGAGCATGCTCTTTGGTTGTTTTCAGCAGT
TCTTCTTATAGCATTGTCGTGTCGTGGTGGGATCTGCTTTGACATGTGAT
CAGATGGTGGATGCTGCTGTATTTCTGTGTCCTATGGCGGTGCGAGCAGC
ACTTCAGACAGAACGTTTCTGTAGCTTGGCATTACCTACCTATTGCATGA
TATGGTAGATGGATGACAGGCAGCACGTCAGACAGAAATCCTGTAGCTCG
TGCTTGTATCATAGCACATTGTTATGATACAAGTATGATAGTTTTCCTGT
AAATCAGGGGGTCAGGCGCTCCGGACGGCGTGCGGGTTATATCTCTGTCA
TGTCTTCTGGCCATCAGTTTTTTGTTCGGTGTAGGGGTGCTGGATTTCAC
TTGCTCTCGTGCCTTCATGTGACCACGAGCGGGATCAGCATCCAATTTTT
TATAAAAAACAAAAACAAATAGTTCCCATGTACATCCCTAACTCACGGGC
ACACTGGTTCAGGCAATTGCAAAAATGGCGGGCCGGTCGGTTGTAAGTGT
GAAAATCAATCAAAACCAATAAATCAAATGCAAAGATGGAATTTTGACAA
AAACTTTACTCTCGGAAACAGTTGGGGCATGCCTCGGATCTTGGGCCTGC
TAAGAAAACAAAAAACAAACTAAAACAGAAAGAAGAATAACGATCCCCTC
TCCTACAGCAGGGAGGGCTCAGCGCACCCGCGGGTCTGGCATTCGTTGCG
CAAGCAAAAATAATATAGATAAAACAACAGTGGGCGGTATTTTTAGCGTC
GTGGCTCAATTTTCTTGTTTGGGTGCGCACACCAGTTTTCTTGTTGAAAT
ACTCTTTATTTTTTGTCCGGGTTCTCATCAATCATCAACCTCGTTTCTTC
TTTCTTGGATGCTCCGCGAAAGTGTCTTGTTGACTCGAGTTTCACTGTGG
TACTCTGACGCAAAACAGACACGCCGAACCCTGAGAGCAGTTACTCTAAT
CGACACCAATCCCTGAAGCTGCTGTGCCCACCATGATACAGACCGGAAAC
CGGAAACAAACAAATTCAGTAGTTACTGAGGTATGTCCTGTGTACTGTAA
TCCAGTATCATACCACGGCAGTGTCATAAGAACCAACTCTTCTAAATCGA
AAGCTCGTGTTGAAGACATTGGGGGTCAGCGCCCGCCCTGACCTCCCCAC
CTCCTCTTGCAGCTCTGCCTCTAGAAGCACCCTCGTTTCTTATAATGTGC
GGTGTCGATCGTCGATGTTTCTTAGGTGGGCATTTCCTATTGGATCGCGC
ACTTTATGCGATGTGTCTTACGCCAAACTTCCAAGATTTCGTTAGAAAAC
GAAGCTGAGTTCAATATTTCTTAACTGCGGGCGCCCACTGTGATACTACT
GTCTTTTTGGATCTCTGTTTGTCGTGTTGTTTTCGTATCGGACATCGGAC
TGGATTGGATTGAGGGCGCCCAAACTGCCACCCTTTCATGCGTTGGGCGT
TGGGATATGCTGTGTGTAAATGCTGGAGCATCTCGCCGCCGAAAGCGTTT
TACGCTTCACCCTTGCCTGCTGGGAGCGTAGTACAGCACTTCGAAGTATG
TCTAAAAAGAGTATACTGGTACGTGCGAGCGGTTCTATAATATGATACAA
ACGTCGGCAGTGCATATCATCCCGGACTCCGTGCTGCGGTTTACGCTTTT
GTCGCTTGTCTGGCCTCGATTCCTGTGCGTCGCGACGGGCTTGCGTCGTC
TTGTACTACTATTAATGTTAATCCTACCAGCCCTGTACAAGTATACCTGG
TATATTATATATATTTTTCACATCTTTATTAATTCATAGCGCTTTCTAAT
AGCGATTTTAGAGTGACCACGCCCACACTAATCTCCTACGCGATTTTGGA
GCCCATTTTGTACACTAACCTCGTATACGAGTTTGAGGCCAAGTAACTTG
ATGTTTGTATTGAGCGCCAAGTGTTGAAAATGGTAGGATTTTTCACTTCA
CGGGCGGAGCCGTGGCTACCTACTACAGTAGTATTATGTTAATGCAATCG
TGTCCTGTACGTAATATGTACGATACGTGGCAACCGCGCCCCTCTGGTCC
GACTTTTCTCTGTCGTTTGGTGACTATTGCCGCCACACACCGCTCAACTA
GACATCGTTTCGATCTGTGTGGTTCACGACAGTGGGTACAATGCCTGGCC
GCGGGAGCGAGTGTTGGTGGGGTGTTGCACTGAACAACAACTTTACAAAA
TTCTCTTGATTGCATTATGTGTTGTAGTACCCGTCTTCGAGCAGCTGTAT
CGTATCCGTTACGCTGCCTTTGCCCTGCGCGTGTATGATGCATCGGTGGA
CACCTACTTGTACAAGTGTATAATGTGCTGTACCGTCTTCGAGCAGGTGT
ATCGTATCTGTTACGCTGCCTTTCCCGCGCGTGTACGATGCATCGGTGAA
TACCTACTTGTACTAGTATATAGTACTATGTGTGTGTGTTTTATTTTCTT
CTTCATTTTTACTCGCCAGCCGGGCTGAAGCGAGCACCTTTCCCTGCCGG
CATCGCTGCCTATTTCGTTACCCGTTGAGAGAAGCTCCCCTGGCGCTATC
ACACCGCATTGACGTGTCCTCAGTGTTGTATCTCGAAGAAATTTTTCGAG
ATCAATACACGGGCGAGACGAGATTTAGGGCGTCTCGATCTCGACCATTT
TTTGTTTTTTTTTTGGAGCAATCTCGATTTATCTCGATCGAGATCGATCA
CAGATAACGCCTCGANNNNNNNNNNACGAGATTTAGGGCGTCTCGATCTC
GACCATTTTTGGGCGAGATTAGCGATCATAGATAACGCCTCCTGATATTA
TGCAACCCCCCCCCCTCAAGCTTCTTTTCAAAGGGTTATGACCCTAAAAC
AAGCTTTTTTTTAAGGTCATACCCATTTGCTTCTGTTACGGGTGGTCCTC
GAATGAATTCTACATCTCGAATGTCTCGCTCGTCTCGACGAAATTTTGTT
TTCGAGAAAATCTCGAATCTCGATTGAGCCAAAAATTTCGTCGAGATACA
ACACTGCGTGTCCTACAGAATGGGAAAAGTCAACGCGGTAACGTGTCACC
GTAGGCATTCCCTGCATCGGCGAAATCCCGTTTAACAAGCGCGCTTGACT
TTGCGACCCAAAACCAGAAGCCCAACAGTTTGCTGAAGGTATAGACAACC
ATCTACTTGTGTAGTCCATTTTTCTCTCGTGCCGGATATTTTCCCCATCC
GTTCGCCCGAATATGTTTACCTCGCCGCTCCGCAGGCGGTTCTCCGTCGG
AACGATCGTCGTCCCCGCTGGGTCCGGGCGTAAGTCACGTGTCGGTTTCG
AGCCCGACCTTTGCCGGTGAGCGGCTTGCGAGAGCCTGTAGGCTTCTAGG
CAAGCAGAAGAAGAAAGACAATAAGAGACGCCTTAGGAATGTAGCAGCAG
TACGGGCGTCGAGAGCCAGGAGTAAGGCACGAATAGCAACAACCCACGTC
GAAGATAGAAGAGGTACTTCCATCGGGAGTCAGCCCATGTAACCGTTTTG
GGCGCATACCGCCTCTGTTTCGATACAACGCCGAATTGGACGGTATTATC
CAAGTAAATATAAAAGTTTCCTTGTCAAGTTGGCAGATATTCGAAATCTG
CTGGGCCTCCAGAAACGAAATGGGTTTCATTGTTCCGCCTTCCTCGCTGT
GTCCCGTTTGTTGTTTTTAATGCTCTATCGCTTGTGGAAAGTACTAAATG
CTGTATGTTATTGGTGCAATCGAGGAAGCACGCGGACGACGGTCTTGCCT
ATACGTTCGTGTAGGTATTTTCTGCCGGGTCTGCTGATTGGCCGTGTGTC
GACCTCTGAAGCCCCCGCTTGCAGTGTCGCGAGTGGCGTGGCAGTGACCT
ACATGACGTTGAGAGAGGTGTTTCGCGTTGATTTGTGAATGTTAAGATTT
CGCTCTGGCCCAGCGCGCGGATCTCCGGCCACCTTTTCTGCCAAGCGCGT
TACAACCGTGGGGGTACTTCGCGACAGCCGCCTACAGTATTGCCACGTCG
CTGTGGAAATCCAACCCAGATTCCGTGCACGGAAGCCCCGACCGAGCACA
GAGCGTATGATAGCGCTGACGGCAGTGTCATGACTCAACCCTGTAATATG
TTGCCACGGCCGAGTGTACCCACAACACAACCGCTTGGAAGGCTCGGCAA
CATAGTGTGCCACGTACCTGCATGCGTAACGTCGAGGTGTCCGTGTCGCG
ATGGCTGTCTTGCGATTGGCATCCGCTTGCTGCTGCTGCTGCTGCTGCAG
GAGAGACCGGCCCAAATGATCGTCTCATGGCGTGCTACCGATACTCGAGA
GCCATTCGCGTCCTGGCCGTACTGGATGCGGTCGTGGTTTTGTACGGCGC
CAGCGCCTTCACGTGAGAACAGCGGCGGCCTCAAGGAAGCCCGTGGATTT
TTAGGACTTTAAGAGCAGCCGACCGCGCGAGTAGATTTCTTGACTTTTTG
TGATTGTTCGGCTCCCTTTCGCGATGGAAAAGTGAGGGCCGTGATTCTGT
AGGACGCCCGTCGATTTTCACTATTAGTATTAATGCGTACAGTCGGCGGC
CCGCGGAATCCGAGCACCGCTTACGATTTGCTCGGAAACGCATGCCATGA
CGAGCTTGGGGGGAAATCGTGAGGGTGCAGCATTCTACTTTTACTCTTGT
AGCCCCAGTATAGTGATACGCCCGCCGTCTGCAGCACACTTTTCCGGGAA
CTGTTCGGTTGAACCGCTCGTTCCCTCTCGGTCTCGCCTGCGCGTGCGTG
CGGAATCGCTTGCGTCTGTCGCTTATCGCTCTCATCGCACCGGTTGCCTT
ACGCCCTGCTAGGCCGTTGATCCTCATGATGTGGGGGCCAATCGCGGGCT
ACATGTCTTCCAACTTCCAGTTAAGGTCGGCGTACGCGTTCCTCTTCTAC
TACGGTCTGAGGGTTTCCTGGGACATCGGGTGGCTGTTAAGTGGCGGGAT
TACGTGGTGAGATGCGATGATTTGTTAGAGGAAGCGCGCGTAACACCCGT
TTGTGTCGACTACTTTATAGGTGTTTTGACTGTTTTAAGTGTCCCAGTAC
CATCCTTGTACCCGACGATCACGTGTGTTCGCTGGCATTTCTGCGCTGTA
GACCCCAGGTTCTTGCGCGTGACACGCACGTGGTAGCTGCCAAACTCACT
GAGCTGCTGCCTGTTCCCGCATGCCAAAATATCACATGGCGACAACACTC
CCCCCACGCCTCTGTTTCTGCGCCCTGCTGTGTGTTCCCGTTTCGGTTCG
TGCTACGTTCGCGAACCCGCCGAATCGCATGCATCAGGATCGTCGTGTGG
GTGTTCCTTGTCACTGACGCCGCGGCCTCAGCATTGGTATACTTCTATCT
AGCAATGCTGCGAAAATGCACACCGGCCGAGGTGGAACAGCTTCGGCACC
CCGCGACCCCGTGGGCGTCGGCCTTTTTCCCGCTCACCGTCCCCGGTACC
CTGCCGGCTTCCGCCTCTTGATGGAAACTTACCCTGAACTTATTTATTCA
AGATCGTGTCGGGCACGCACATGTCGGGTCTCGGCGTCAGAGGTTTGTTC
CGGAAAAGAGCAAAGCAATGGTAGCCTGCGGACGAAGCACGCAGTGGCGA
TTCTCCTCGGCGTAGGATACTATTAATACCACAAGGATTGGTTGGACCCC
AATCCTAGTTTTGTGTTCATAAATATTTACAGTCTTCGGGGGAGAGTATT
TTGGTTCTATGGAATGGGGGGTGGAATATTGTGACGTTGTTATGCAAGAT
TCGAGCAGCCTTTCCTTACTAGGCAGCCTCCCTTTTTGTTTTATGTTTCG
TGTTTTTTGTTGTTGTTGTTTCCTCTCGTGCCGTCTCGTCATTTTTCTTG
CGACAAAACGTACGTGGGCGTGCGTGCGGCAGGCAAGTCGCGCGCGCGCA
CGCGTAACCGGCGCGCTTTCCTCTCTGTGTTGTGTATCACACATACAATA
ATAGTTGGGTCGTTTTGCTCTCGATTTTGTTGGCGCTTGAGCACATGAGC
ACGCGCTGTCAGGTGTGTGTTGCTCGGCTTTGGGGCCTGCGTCTTTTTTC
GTTCGTGCATATCATGCTCAGAGACAGTTGTTGGTGGCGGTTGTAAATAC
CGTATGGTATATATTATGACGTGCAATTGTATGAACCACAAAGTCATGGA
TTGGATCATTTGTCAATATTTTTGCAGGTATTATTAAGTGTAAAATATGA
TTTTACGTGTTTGTGTTTACGGGATTTTTGTCCTTCTCACTGCTGTTGTT
GCTCGTTGGTGTTGACTTCTCCCACCGCCCTTTCCCATTAGTCTCGTTGC
ACGGCGTGGGTTTCTATAGAGCAGTATGTATGATGCGTGTGGGAACGCTC
TCCCACGGCTCGGTTGTACGCGGGCTTCTGTCCTCGCTCTCGTGCCGATG
CGGCCTACGTATCACACCGAGGTATTCGCACACACGAGTAGTAGCCAGCG
CTGTCATTCCTTGTAACAGTGTATAGTATTTGCTGCGGTTTCGGGAAGCC
CCTCTGTTCCGTGTGCAAGTAGGCTTGGTGTTTTATGAGGCTACAATTTT
GGTCGGAAATCGTTCAGGATATCAGTTCCTTTGCAAGCAGGCAGAATACG
TGCAGTTTGGTAAGCACGTTTTGACGCTCCTTCAGATGCCGCGGCAGCTT
CCCTCGGAGCCTCAAAACTTTTTCTCTGCGAGTTGGGTACCGATGTGTGG
AGCATGCTTATGGAAGACGACGAGCGTCGATCGGGCAAGCAACATGTTAA
TGCACTGTACGACGCAGAGTTAACGAAGATCCGACGAAAACGGCTGTCTT
CTCACCACGTAGGTGTGCCTTCCTCAGCAACTATCGCAGTAACCCCCCTC
GTGTACCTATACTACTTATGCTGCTGTATTCCGTTTTTATTCATTTGCAT
TAGACCGCGCAAACCGGCTCGACATGTGGAGGCGTCATCGCCGGTGTAGT
TCATAACCACCCTTGTGGTTACATCACGGAGGGGGTTGGGGTTTGGCTAC
TCCTACTCCCACAAGCGCGGCTCCAAAGCCACGCACACACATTCCCTTTT
AATTTAATTTGCATTAAACCGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9693:200..7621+ >mRNA_S-dermatodea_contig9693.17694.1 ID=mRNA_S-dermatodea_contig9693.17694.1|Name=mRNA_S-dermatodea_contig9693.17694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig9693:200..7621+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGCGTGCTACCGATACTCGAGAGCCATTCGCGTCCTGGCCGTACTGGA TGCGGTCGTGGTTTTGTACGGCGCCAGCGCCTTCACATGGCGTGCTACCG ATACTCGAGAGCCATTCGCGTCCTGGCCGTACTGGATGCGGTCGTGGTTT TGTACGGCGCCAGCGCCTTCACGCCGTTGATCCTCATGATGTGGGGGCCA ATCGCGGGCTACATGTCTTCCAACTTCCAGTTAAGGTCGGCGTACGCGTT CCTCTTCTACTACGGTCTGAGGGTTTCCTGGGACATCGGGTGGCTGTTAA GTGGCGGGATTACGTGGCCGTTGATCCTCATGATGTGGGGGCCAATCGCG GGCTACATGTCTTCCAACTTCCAGTTAAGGTCGGCGTACGCGTTCCTCTT CTACTACGGTCTGAGGGTTTCCTGGGACATCGGGTGGCTGTTAAGTGGCG GGATTACGTGGATCGTCGTGTGGGTGTTCCTTGTCACTGACGCCGCGGCC TCAGCATTGGTATACTTCTATCTAGCAATGCTGCGAAAATGCACACCGGC CGAGGTGGAACAGCTTCGGCACCCCGCGACCCCGTGGGCGTCGGCCTTTT TCCCGCTCACCGTCCCCGGTACCCTGCCGGCTTCCGCCTCTTGAGATCGT CGTGTGGGTGTTCCTTGTCACTGACGCCGCGGCCTCAGCATTGGTATACT TCTATCTAGCAATGCTGCGAAAATGCACACCGGCCGAGGTGGAACAGCTT CGGCACCCCGCGACCCCGTGGGCGTCGGCCTTTTTCCCGCTCACCGTCCC CGGTACCCTGCCGGCTTCCGCCTCTTGA back to top
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