mRNA_S-dermatodea_contig9690.17691.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9690.17691.1
Unique NamemRNA_S-dermatodea_contig9690.17691.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A1V5H306_9DELT (Cystathionine beta-lyase PatB n=1 Tax=Deltaproteobacteria bacterium ADurb.BinA179 TaxID=1852872 RepID=A0A1V5H306_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 2.110e-7
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  367 FDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILELRRRSRRP 498
            FDF+ PV+R GTG+LKWD+Y G+DVIP+    W+ ++  ++R P
Sbjct:   16 FDFDAPVERRGTGSLKWDRYKGRDVIPL----WVADMDFKARPP 55
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A835ZGK3_9STRA (Aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.040e-6
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  349 AEEREVFDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILEL 477
            A   + FDFET  DRSGTGALKWDKY+G+D+IP+    W+ ++
Sbjct:   74 APAEDEFDFETLPDRSGTGALKWDKYAGRDIIPL----WVADM 112
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A523XWE9_9DELT (Putative C-S lyase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A523XWE9_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 1.110e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  364 VFDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILELRRRS 489
            VF+F+TP+DR  TG++KW+KY GKD+IP+    W+ ++  RS
Sbjct:    5 VFNFDTPIDRRNTGSMKWEKYKGKDIIPL----WVADMDFRS 42
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A643GAR1_9DELT (Putative C-S lyase n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A643GAR1_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 2.770e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  361 EVFDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILELRRRS 489
            + FDF+TPVDRS T + KWDKY G+DVIP+    W+ ++  RS
Sbjct:    4 QSFDFDTPVDRSATDSEKWDKYQGRDVIPL----WVADMDFRS 42
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A1L3GRI0_9DELT (Aspartate aminotransferase n=3 Tax=Desulfuromonadales TaxID=69541 RepID=A0A1L3GRI0_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 3.780e-5
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  358 REVFDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILEL 477
            R +FDF+  VDRSG+G+LKWD+Y+G+DV+P+    W+ ++
Sbjct:    2 RVMFDFDRIVDRSGSGSLKWDRYAGRDVLPL----WVADM 37
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A522W0U4_9PROT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522W0U4_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 6.090e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  364 VFDFETPVDRSGTGALKWDKYSGKDVIPI-------RSPTWILELRR 483
             FDF+TPVDR+GT + +W+KY+G+DV+P+       R+P  +LE  R
Sbjct:    2 TFDFDTPVDRAGTWSARWEKYAGRDVVPLWVADTDFRAPPAVLEAMR 48
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BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A1F4F6H8_9PROT (Aminotran_1_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F6H8_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 7.010e-5
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  364 VFDFETPVDRSGTGALKWDKYSGKDVIPI-------RSPTWILE 474
            +FDF+ PV+RSGT +L+WD+Y+G+DVIP+       R+P  +LE
Sbjct:   12 LFDFDAPVERSGTWSLRWDRYAGRDVIPLWVADTDFRAPPAVLE 55
[Close]
BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Match: A0A7Y7NPG5_9DELT (Putative C-S lyase n=1 Tax=Geobacteraceae bacterium TaxID=2282154 RepID=A0A7Y7NPG5_9DELT)

HSP 1 Score: 52.0 bits (123), Expect = 9.420e-5
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  367 FDFETPVDRSGTGALKWDKYSGKDVIPIRSPTWILELRRRS 489
            FDF+TPVDR GT + KW+KY+G+D+IP+    W+ ++  RS
Sbjct:    5 FDFDTPVDRRGTSSDKWEKYAGRDIIPL----WVADMDFRS 41
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9690.17691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1V5H306_9DELT2.110e-750.00Cystathionine beta-lyase PatB n=1 Tax=Deltaproteob... [more]
A0A835ZGK3_9STRA1.040e-655.81Aminotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A523XWE9_9DELT1.110e-550.00Putative C-S lyase n=1 Tax=Desulfobacteraceae bact... [more]
A0A643GAR1_9DELT2.770e-553.49Putative C-S lyase n=2 Tax=Geobacteraceae TaxID=21... [more]
A0A1L3GRI0_9DELT3.780e-550.00Aspartate aminotransferase n=3 Tax=Desulfuromonada... [more]
A0A522W0U4_9PROT6.090e-546.81Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A1F4F6H8_9PROT7.010e-550.00Aminotran_1_2 domain-containing protein n=1 Tax=Be... [more]
A0A7Y7NPG5_9DELT9.420e-551.22Putative C-S lyase n=1 Tax=Geobacteraceae bacteriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9690contigS-dermatodea_contig9690:581..1289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAminotransferase
Ec32 orthologEc-12_000740.1
Exons2
Model size503
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.3580813-CDS-S-dermatodea_contig9690:581..6331622925425.3580813-CDS-S-dermatodea_contig9690:581..633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 582..633 -
1694079924.6967509-CDS-S-dermatodea_contig9690:581..6331694079924.6967509-CDS-S-dermatodea_contig9690:581..633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 582..633 -
1622925425.3717396-CDS-S-dermatodea_contig9690:840..12891622925425.3717396-CDS-S-dermatodea_contig9690:840..1289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 841..1289 -
1694079924.7083397-CDS-S-dermatodea_contig9690:840..12891694079924.7083397-CDS-S-dermatodea_contig9690:840..1289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 841..1289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9690.17691.1prot_S-dermatodea_contig9690.17691.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9690 582..1289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9690.17691.1

>prot_S-dermatodea_contig9690.17691.1 ID=prot_S-dermatodea_contig9690.17691.1|Name=mRNA_S-dermatodea_contig9690.17691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
GVRLWFRLARARLPDSTEYIGVVLHCAMYARVVAAAAMTSLALLSRRVGA
FSGGPRAVSSRWIQRSPSPSAPGAGAGAAAARSTVRSRSLVSAASPPPAR
KRRHLHSATAVSQHTGAEEREVFDFETPVDRSGTGALKWDKYSGKDVIPI
RSPTWILELRRRSRRPS
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mRNA from alignment at S-dermatodea_contig9690:581..1289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9690.17691.1 ID=mRNA_S-dermatodea_contig9690.17691.1|Name=mRNA_S-dermatodea_contig9690.17691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at S-dermatodea_contig9690:581..1289- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGCGGCTCTGGTTCAGGTTGGCAAGGGCAAGGTTGCCAGACAGCAC
AGAGTACATAGGAGTAGTCCTCCACTGTGCTATGTATGCCCGAGTGGTTG
CTGCCGCCGCGATGACGTCCCTAGCTCTGCTTTCGAGGCGCGTAGGAGCC
TTCAGTGGTGGCCCGCGCGCCGTATCTTCTCGATGGATACAGCGATCACC
GTCACCGTCAGCACCAGGAGCAGGAGCAGGAGCAGCAGCAGCACGCAGCA
CCGTAAGAAGCAGGTCACTTGTATCGGCGGCATCACCGCCTCCTGCTCGA
AAACGTCGGCACCTGCACTCCGCCACGGCCGTTTCGCAGCACACCGGGGC
GGAAGAGCGAGAGGTATTCGACTTCGAGACGCCCGTCGATCGCTCGGGCA
CTGGCGCCCTGAAGTGGGACAAGTACTCCGGCAAGGACGTGATCCCCATG
TGGGTACGTTGTAGGAACATGAGGGGACATGTAGTATTCCGCTCGATAAC
TGCTGTAGTACATGAACATCATTTCGCACCCTTAGTCAACTATTATCGAA
TAAGGTTGTTCGGCATCAAAATGCTGTGCGTCTATCTGGTGTGACCTCTC
GTGCCATTGAGCCCTTGCTCTTGGCCTTGCCCGTGGTGTGTGCGCTGCTC
TATTAGTAGGTCGCCGACATGGATCTTAGAACTTCGCCGGCGATCGAGGC
GGCCGTCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9690:581..1289-

>mRNA_S-dermatodea_contig9690.17691.1 ID=mRNA_S-dermatodea_contig9690.17691.1|Name=mRNA_S-dermatodea_contig9690.17691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig9690:581..1289- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGCGGCTCTGGTTCAGGTTGGCAAGGGCAAGGTTGCCAGACAGCAC
AGAGTACATAGGAGTAGTCCTCCACTGTGCTATGTATGCCCGAGTGGTTG
CTGCCGCCGCGATGACGTCCCTAGCTCTGCTTTCGAGGCGCGTAGGAGCC
TTCAGTGGTGGCCCGCGCGCCGTATCTTCTCGATGGATACAGCGATCACC
GTCACCGTCAGCACCAGGAGCAGGAGCAGGAGCAGCAGCAGCACGCAGCA
CCGTAAGAAGCAGGTCACTTGTATCGGCGGCATCACCGCCTCCTGCTCGA
AAACGTCGGCACCTGCACTCCGCCACGGCCGTTTCGCAGCACACCGGGGC
GGAAGAGCGAGAGGTATTCGACTTCGAGACGCCCGTCGATCGCTCGGGCA
CTGGCGCCCTGAAGTGGGACAAGTACTCCGGCAAGGACGTGATCCCCATG
GCGTGCGGCTCTGGTTCAGGTTGGCAAGGGCAAGGTTGCCAGACAGCACA
GAGTACATAGGAGTAGTCCTCCACTGTGCTATGTATGCCCGAGTGGTTGC
TGCCGCCGCGATGACGTCCCTAGCTCTGCTTTCGAGGCGCGTAGGAGCCT
TCAGTGGTGGCCCGCGCGCCGTATCTTCTCGATGGATACAGCGATCACCG
TCACCGTCAGCACCAGGAGCAGGAGCAGGAGCAGCAGCAGCACGCAGCAC
CGTAAGAAGCAGGTCACTTGTATCGGCGGCATCACCGCCTCCTGCTCGAA
AACGTCGGCACCTGCACTCCGCCACGGCCGTTTCGCAGCACACCGGGGCG
GAAGAGCGAGAGGTATTCGACTTCGAGACGCCCGTCGATCGCTCGGGCAC
TGGCGCCCTGAAGTGGGACAAGTACTCCGGCAAGGACGTGATCCCCATTA
GGTCGCCGACATGGATCTTAGAACTTCGCCGGCGATCGAGGCGGCCGTCC
TAGGTCGCCGACATGGATCTTAGAACTTCGCCGGCGATCGAGGCGGCCGT
CC
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