mRNA_S-dermatodea_contig96539.17664.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig96539.17664.1
Unique NamemRNA_S-dermatodea_contig96539.17664.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: D7G8U2_ECTSI (1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8U2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.700e-29
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   13 ENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            +NPDMGVTVADARFMKPLDVDLIRRLA EHDAMLT+EENA+GGFGAHVLHFMVLDGL+DD
Sbjct:  677 DNPDMGVTVADARFMKPLDVDLIRRLAGEHDAMLTVEENAVGGFGAHVLHFMVLDGLVDD 736
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A0G4GWE9_VITBC (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWE9_VITBC)

HSP 1 Score: 108 bits (271), Expect = 3.450e-26
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 SLQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            +L+ ENPD+GVTVADARFM+PLD+DLIRRLAR H AM+T+EE ++GGFG HVLHFM LDGLLDD
Sbjct:  613 ALESENPDLGVTVADARFMRPLDIDLIRRLARTHRAMVTVEEGSVGGFGDHVLHFMALDGLLDD 676
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A835ZBE2_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.620e-25
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            L+ ENPD+GVTVADARFMKPLDV+LIR LAR H  ++T+EE A+GGFG HVLHFM LDGLLDD
Sbjct:  419 LERENPDLGVTVADARFMKPLDVELIRDLARRHSVLVTVEEGAVGGFGDHVLHFMALDGLLDD 481
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S2XUY7_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.750e-23
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++ ENPD+ VTVADARFMKPLD+DLIR LA  H  ++TIEE A+GGFG HVLHFM LDGLLDD
Sbjct:  608 IEAENPDISVTVADARFMKPLDIDLIRELAGNHKVLITIEEGAVGGFGDHVLHFMALDGLLDD 670
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S0AYA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYA0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.800e-23
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++E++PD+ VTVADARFMKPLD+D+IR LA E+  ++T+EE +IGGFG HVLHF+ LDG LDD
Sbjct:   26 VEEKDPDIAVTVADARFMKPLDIDMIRELADENGVLITVEEGSIGGFGDHVLHFLTLDGALDD 88
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A3G5BBY2_HASOS (1-deoxy-D-xylulose-5-phosphate synthase (Fragment) n=1 Tax=Haslea ostrearia TaxID=67476 RepID=A0A3G5BBY2_HASOS)

HSP 1 Score: 98.6 bits (244), Expect = 5.230e-23
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++E +P +GVTVADARFMKPLDVDL+R+LA EH  ++TIEE +IGGFG HVLHF+ LDGLLDD
Sbjct:  258 VEETDPTIGVTVADARFMKPLDVDLVRQLADEHSVLITIEEGSIGGFGDHVLHFLSLDGLLDD 320
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S1E6U3_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6U3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.340e-23
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++E++  +GVTVADAR+MKPLDVDLIR+L  +H  ++TIEE +IGGFG HVLHF+ LDGL+DD
Sbjct:   24 IEEQDDKLGVTVADARYMKPLDVDLIRQLVDDHSVLITIEEGSIGGFGDHVLHFITLDGLMDD 86
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S2YSG5_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSG5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.890e-22
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++E +P +GVTVADARFMKPLDVDL+R LA EH  ++T+EE +IGGFG HVLHF+ LDGL+DD
Sbjct:  619 VEEGDPTLGVTVADARFMKPLDVDLVRELADEHSVLITVEEGSIGGFGDHVLHFLTLDGLMDD 681
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BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S4K3N8_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K3N8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.360e-22
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 LQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            ++E +P +GVTVADARFMKPLDVDL+R LA +H A++ +EE +IGGFG HVLHF+ LDGLLDD
Sbjct:  683 VEESDPTLGVTVADARFMKPLDVDLVRELADDHSAIVIVEEGSIGGFGDHVLHFLALDGLLDD 745
[Close]
BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Match: A0A7S2CRZ0_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CRZ0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-21
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 SLQEENPDMGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVLDGLLDD 192
            +L+E +PD+GVTVADARFMKPLD+DL+R+LA+E+  +LT+EE +IGGFG HVLHF+  DG LD+
Sbjct:  574 TLEESDPDLGVTVADARFMKPLDIDLLRKLAKENSVLLTVEEGSIGGFGDHVLHFLAGDGALDN 637
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig96539.17664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U2_ECTSI2.700e-2991.671-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Ec... [more]
A0A0G4GWE9_VITBC3.450e-2676.561-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Vi... [more]
A0A835ZBE2_9STRA4.620e-2576.191-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Tr... [more]
A0A7S2XUY7_9STRA1.750e-2373.021-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Fi... [more]
A0A7S0AYA0_9STRA1.800e-2365.08Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A3G5BBY2_HASOS5.230e-2371.431-deoxy-D-xylulose-5-phosphate synthase (Fragment)... [more]
A0A7S1E6U3_9STRA5.340e-2365.08Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2YSG5_9STRA2.890e-2268.251-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Am... [more]
A0A7S4K3N8_9STRA7.360e-2268.251-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Od... [more]
A0A7S2CRZ0_9STRA1.000e-2165.631-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Fl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig96539contigS-dermatodea_contig96539:75..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D7G8U2
Preferred nameDXS
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K01662
KEGG ReactionR01067,R01641,R01830,R05636,R06590
KEGG Pathwayko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00096,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006725,GO:0006778,GO:0006779,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0008661,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016744,GO:0018130,GO:0019288,GO:0019438,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046490,GO:0051186,GO:0051188,GO:0071704,GO:0090407,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.transketolase activity
EggNOG OGsCOG0021@1,KOG0523@2759
EC2.2.1.1,2.2.1.7
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s7_g14558_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size192
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.2679749-UTR-S-dermatodea_contig96539:74..981622925423.2679749-UTR-S-dermatodea_contig96539:74..98Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig96539 75..98 +
1694079923.2938023-UTR-S-dermatodea_contig96539:74..981694079923.2938023-UTR-S-dermatodea_contig96539:74..98Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig96539 75..98 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.2908864-CDS-S-dermatodea_contig96539:98..2661622925423.2908864-CDS-S-dermatodea_contig96539:98..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96539 99..266 +
1694079923.3096306-CDS-S-dermatodea_contig96539:98..2661694079923.3096306-CDS-S-dermatodea_contig96539:98..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96539 99..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig96539.17664.1prot_S-dermatodea_contig96539.17664.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig96539 99..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig96539.17664.1

>prot_S-dermatodea_contig96539.17664.1 ID=prot_S-dermatodea_contig96539.17664.1|Name=mRNA_S-dermatodea_contig96539.17664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MGVTVADARFMKPLDVDLIRRLAREHDAMLTIEENAIGGFGAHVLHFMVL
DGLLDD
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mRNA from alignment at S-dermatodea_contig96539:75..266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig96539.17664.1 ID=mRNA_S-dermatodea_contig96539.17664.1|Name=mRNA_S-dermatodea_contig96539.17664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at S-dermatodea_contig96539:75..266+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCTGCAGGAAGAGAACCCGGACATGGGCGTTACCGTCGCGGACGCGCG
CTTCATGAAGCCCCTGGACGTGGATCTCATCCGGCGACTCGCCAGAGAGC
ACGACGCGATGCTTACCATTGAGGAAAACGCCATCGGGGGCTTCGGGGCA
CACGTGCTGCACTTCATGGTGCTGGACGGTCTGTTGGACGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig96539:75..266+

>mRNA_S-dermatodea_contig96539.17664.1 ID=mRNA_S-dermatodea_contig96539.17664.1|Name=mRNA_S-dermatodea_contig96539.17664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig96539:75..266+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGTTACCGTCGCGGACGCGCGCTTCATGAAGCCCCTGGACGTGGA
TCTCATCCGGCGACTCGCCAGAGAGCACGACGCGATGCTTACCATTGAGG
AAAACGCCATCGGGGGCTTCGGGGCACACGTGCTGCACTTCATGGTGCTG
GACGGTCTGTTGGACGATATGGGCGTTACCGTCGCGGACGCGCGCTTCAT
GAAGCCCCTGGACGTGGATCTCATCCGGCGACTCGCCAGAGAGCACGACG
CGATGCTTACCATTGAGGAAAACGCCATCGGGGGCTTCGGGGCACACGTG
CTGCACTTCATGGTGCTGGACGGTCTGTTGGACGAT
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