mRNA_S-dermatodea_contig9636.17648.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9636.17648.1
Unique NamemRNA_S-dermatodea_contig9636.17648.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.970e-23
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 1 
Query:    4 SHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDIWRRVADLAGKAVEVP--YDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDKYATLATWKEKTL--------------GKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE 450
            SHA+  RE ++ FP+SR +AL RWR+H S  AALFAWP+E  V I   ++ L   AVE P  YDA LD M +   D F   LERVA    LAG++  A  KY  L    E  L              G    LA++LHNL + +  LG   EA   H RA +IRE
Sbjct:  356 SHADFVRELISCFPLSRKRALGRWREHASTPAALFAWPVEDSVRIQWALSSL-DDAVEPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVVVTESRLEREAAGGGDSISQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIRE 519
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BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.200e-23
Identity = 69/165 (41.82%), Postives = 88/165 (53.33%), Query Frame = 1 
Query:    4 SHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDI-WRRVA-DLAGKAVEVPYDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDKYATLATWKEKTL--------------GKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE 450
            SHA+  RE ++ FP+SR +AL RWR+H S  AALFAWP+E  V I W  ++ D A ++   PYDA LD M +   D F   LERVA    LAG++  A  KY  L    E  L              G    LA++LHNL + +  LG   EA   H RA +IRE
Sbjct:  641 SHADFVRELISCFPLSRKRALGRWREHTSTPAALFAWPVEDSVRIQWALLSLDDAVESPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVGVTESRLEREAAGGGDSIRQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIRE 805
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2X0_ECTSI4.970e-2342.42TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JK89_9PHAE5.200e-2341.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9636contigS-dermatodea_contig9636:1129..1731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue4.5e-21
Seed eggNOG ortholog2880.D7G2X0
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-09_004620.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size604
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925422.059188-CDS-S-dermatodea_contig9636:1128..17311622925422.059188-CDS-S-dermatodea_contig9636:1128..1731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9636 1129..1731 +
1694079922.3959932-CDS-S-dermatodea_contig9636:1128..17311694079922.3959932-CDS-S-dermatodea_contig9636:1128..1731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9636 1129..1731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9636.17648.1prot_S-dermatodea_contig9636.17648.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9636 1129..1731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9636.17648.1

>prot_S-dermatodea_contig9636.17648.1 ID=prot_S-dermatodea_contig9636.17648.1|Name=mRNA_S-dermatodea_contig9636.17648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
ASHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDIWRRV
ADLAGKAVEVPYDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDK
YATLATWKEKTLGKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE
EKLGAHHPDLARTLHALGVCASSAGRMEQAERLLTRALSIWEESLGWHHP
D
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mRNA from alignment at S-dermatodea_contig9636:1129..1731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9636.17648.1 ID=mRNA_S-dermatodea_contig9636.17648.1|Name=mRNA_S-dermatodea_contig9636.17648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at S-dermatodea_contig9636:1129..1731+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTCCCACGCGGAGGTCGCCAGGGAGCGCCTCGCCGACTTCCCGGTGTC
GCGCGGGAAAGCCCTCGCTCGGTGGCGGGATCACGTCTCGAAAGCCGCCG
CTCTCTTTGCCTGGCCACTGGAGACCCTCGTAGACATCTGGCGACGTGTC
GCGGATTTGGCGGGCAAGGCAGTCGAAGTTCCGTACGACGCCGCGTTGGA
CGCCATGCGAGAGGAGGGAGACGACAGGTTTCCGATCGCTCTGGAGCGCG
TGGCACATTTCCACTGGCTGGCAGGGGACGTCGCCGCGGCCCGCGACAAG
TACGCCACCCTGGCGACCTGGAAGGAGAAAACGCTCGGCAAGCACCCGAA
CTTAGCAGAACAGCTCCATAATCTCGCCGTGTGCTCGTCCGAGCTGGGAC
AGGTACGAGAGGCCGAGGAGATCCATCGCCGAGCGCTGGCCATCAGGGAG
GAAAAGCTAGGCGCCCACCACCCGGACCTCGCGCGCACCCTGCATGCTCT
CGGGGTGTGCGCGTCGAGCGCTGGACGGATGGAGCAAGCAGAGCGGTTGC
TGACGCGGGCGTTGTCGATCTGGGAGGAGAGTCTCGGCTGGCACCACCCG
GAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9636:1129..1731+

>mRNA_S-dermatodea_contig9636.17648.1 ID=mRNA_S-dermatodea_contig9636.17648.1|Name=mRNA_S-dermatodea_contig9636.17648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig9636:1129..1731+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTCCCACGCGGAGGTCGCCAGGGAGCGCCTCGCCGACTTCCCGGTGTC
GCGCGGGAAAGCCCTCGCTCGGTGGCGGGATCACGTCTCGAAAGCCGCCG
CTCTCTTTGCCTGGCCACTGGAGACCCTCGTAGACATCTGGCGACGTGTC
GCGGATTTGGCGGGCAAGGCAGTCGAAGTTCCGTACGACGCCGCGTTGGA
CGCCATGCGAGAGGAGGGAGACGACAGGTTTCCGATCGCTCTGGAGCGCG
TGGCACATTTCCACTGGCTGGCAGGGGACGTCGCCGCGGCCCGCGACAAG
TACGCCACCCTGGCGACCTGGAAGGAGAAAACGCTCGGCAAGCACCCGAA
CTTAGCAGAACAGCTCCATAATCTCGCCGTGTGCTCGTCCGAGCTGGGAC
AGGTACGAGAGGCCGAGGAGATCCATCGCCGAGCGCTGGCCATCAGGGAG
GAAAAGCTAGGCGCCCACCACCCGGACCTCGCGCGCACCCTGCATGCTCT
CGGGGTGTGCGCGTCGAGCGCTGGACGGATGGAGCAAGCAGAGCGGTTGC
TGACGCGGGCGTTGTCGATCTGGGAGGAGAGTCTCGGCTGGCACCACCCG
GACGCCTCCCACGCGGAGGTCGCCAGGGAGCGCCTCGCCGACTTCCCGGT
GTCGCGCGGGAAAGCCCTCGCTCGGTGGCGGGATCACGTCTCGAAAGCCG
CCGCTCTCTTTGCCTGGCCACTGGAGACCCTCGTAGACATCTGGCGACGT
GTCGCGGATTTGGCGGGCAAGGCAGTCGAAGTTCCGTACGACGCCGCGTT
GGACGCCATGCGAGAGGAGGGAGACGACAGGTTTCCGATCGCTCTGGAGC
GCGTGGCACATTTCCACTGGCTGGCAGGGGACGTCGCCGCGGCCCGCGAC
AAGTACGCCACCCTGGCGACCTGGAAGGAGAAAACGCTCGGCAAGCACCC
GAACTTAGCAGAACAGCTCCATAATCTCGCCGTGTGCTCGTCCGAGCTGG
GACAGGTACGAGAGGCCGAGGAGATCCATCGCCGAGCGCTGGCCATCAGG
GAGGAAAAGCTAGGCGCCCACCACCCGGACCTCGCGCGCACCCTGCATGC
TCTCGGGGTGTGCGCGTCGAGCGCTGGACGGATGGAGCAAGCAGAGCGGT
TGCTGACGCGGGCGTTGTCGATCTGGGAGGAGAGTCTCGGCTGGCACCAC
CCGGAC
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