prot_S-dermatodea_contig9636.17648.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig9636.17648.1
Unique Name	prot_S-dermatodea_contig9636.17648.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	201

Homology

[Close]

BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.970e-23
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 0

Query:    2 SHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDIWRRVADLAGKAVEVP--YDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDKYATLATWKEKTL--------------GKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE 150
            SHA+  RE ++ FP+SR +AL RWR+H S  AALFAWP+E  V I   ++ L   AVE P  YDA LD M +   D F   LERVA    LAG++  A  KY  L    E  L              G    LA++LHNL + +  LG   EA   H RA +IRE
Sbjct:  356 SHADFVRELISCFPLSRKRALGRWREHASTPAALFAWPVEDSVRIQWALSSL-DDAVEPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVVVTESRLEREAAGGGDSISQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIRE 519

[Close]

BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.200e-23
Identity = 69/165 (41.82%), Postives = 88/165 (53.33%), Query Frame = 0

Query:    2 SHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDI-WRRVA-DLAGKAVEVPYDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDKYATLATWKEKTL--------------GKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE 150
            SHA+  RE ++ FP+SR +AL RWR+H S  AALFAWP+E  V I W  ++ D A ++   PYDA LD M +   D F   LERVA    LAG++  A  KY  L    E  L              G    LA++LHNL + +  LG   EA   H RA +IRE
Sbjct:  641 SHADFVRELISCFPLSRKRALGRWREHTSTPAALFAWPVEDSVRIQWALLSLDDAVESPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLVGVTESRLEREAAGGGDSIRQAGAELLLADRLHNLGMIAGGLGSTEEAFACHGRARSIRE 805

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig9636.17648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G2X0_ECTSI	4.970e-23	42.42	TPR repeat-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JK89_9PHAE	5.200e-23	41.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 119..152 e-value: 0.16 score: 21.1 coord: 161..194 e-value: 1.2 score: 18.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 52..201 e-value: 2.1E-31 score: 111.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 76..194
None	No IPR available	PFAM	PF13424	TPR_12	coord: 122..192 e-value: 2.7E-17 score: 62.8
None	No IPR available	PANTHER	PTHR45783	FAMILY NOT NAMED	coord: 106..200
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 119..194 score: 10.406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig9636	contig	S-dermatodea_contig9636:1129..1731 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig9636.17648.1	mRNA_S-dermatodea_contig9636.17648.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig9636 1129..1731 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig9636.17648.1 ID=prot_S-dermatodea_contig9636.17648.1|Name=mRNA_S-dermatodea_contig9636.17648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
ASHAEVARERLADFPVSRGKALARWRDHVSKAAALFAWPLETLVDIWRRV
ADLAGKAVEVPYDAALDAMREEGDDRFPIALERVAHFHWLAGDVAAARDK
YATLATWKEKTLGKHPNLAEQLHNLAVCSSELGQVREAEEIHRRALAIRE
EKLGAHHPDLARTLHALGVCASSAGRMEQAERLLTRALSIWEESLGWHHP
D

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom