mRNA_S-dermatodea_contig96234.17640.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig96234.17640.1
Unique NamemRNA_S-dermatodea_contig96234.17640.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.380e-13
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCGLPWP 123
            QVSCGA+HTL ITS+G LFAWGDNR GQCGLPWP
Sbjct:  544 QVSCGAKHTLVITSEGHLFAWGDNRYGQCGLPWP 577
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.800e-12
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCGLPW 120
            QVSCGA+HTL ITS+G LFAWGDNR GQCGLPW
Sbjct:  867 QVSCGAKHTLVITSEGHLFAWGDNRYGQCGLPW 899
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: F4Q620_CAVFA (Regulator of chromosome condensation domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q620_CAVFA)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   25 VSCGARHTLAITSDGQLFAWGDNRRGQCGLP 117
            V+CG++HTL++T DG ++AWG NR GQCGLP
Sbjct:  312 VACGSKHTLSLTCDGAVYAWGSNRNGQCGLP 342
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A1B6H5G9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6H5G9_9HEMI)

HSP 1 Score: 52.8 bits (125), Expect = 6.260e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCG 111
            QV+CG  HTLA+T DG+L+ WGDNRRGQ G
Sbjct:  185 QVACGQHHTLALTEDGRLYGWGDNRRGQLG 214
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A6P8SAN2_GEOSA (E3 ISG15--protein ligase HERC5-like isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SAN2_GEOSA)

HSP 1 Score: 53.1 bits (126), Expect = 6.980e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCGL 114
            QVSCG RH+LA++ DGQLFAWG+N  GQ GL
Sbjct:  136 QVSCGERHSLALSKDGQLFAWGENTHGQLGL 166
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A1B6EUU4_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EUU4_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 8.240e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCG 111
            QV+CG  HTLA+T DG+L+ WGDNRRGQ G
Sbjct:   76 QVACGQHHTLALTVDGRLYGWGDNRRGQLG 105
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: UPI001EE9B12C (secretion-regulating guanine nucleotide exchange factor-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9B12C)

HSP 1 Score: 52.8 bits (125), Expect = 9.480e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCG 111
            QV+CG  HTLA+T DG+L+ WGDNRRGQ G
Sbjct:  197 QVACGQHHTLALTEDGRLYGWGDNRRGQLG 226
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A1B6LKJ4_9HEMI (Uncharacterized protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LKJ4_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 1.770e-6
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   22 QVSCGARHTLAITSDGQLFAWGDNRRGQCG 111
            QV+CG  HTLA+T+DG+++ WGDNRRGQ G
Sbjct:  198 QVACGQHHTLALTADGRVYGWGDNRRGQLG 227
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: UPI001C924AE0 (E3 ubiquitin-protein ligase HERC2-like isoform X1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C924AE0)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-6
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   25 VSCGARHTLAITSDGQLFAWGDNRRGQCGLP 117
            V+ G RHT+A+TSDG+LF WGDN RGQ G+P
Sbjct:  295 VAAGLRHTVAVTSDGRLFVWGDNSRGQLGVP 325
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BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Match: A0A3S2N2M3_ORYJA (HECT domain-containing protein n=4 Tax=Oryzias TaxID=8089 RepID=A0A3S2N2M3_ORYJA)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-6
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   16 LGQVSCGARHTLAITSDGQLFAWGDNRRGQCGL 114
            + QV+CG+RHT+A+T +GQ+++WG+N RGQ GL
Sbjct:  123 VSQVTCGSRHTVALTKEGQVYSWGENSRGQLGL 155
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig96234.17640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWJ8_9PHAE7.380e-1385.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN1_ECTSI4.800e-1284.85Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
F4Q620_CAVFA2.730e-764.52Regulator of chromosome condensation domain-contai... [more]
A0A1B6H5G9_9HEMI6.260e-770.00Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A6P8SAN2_GEOSA6.980e-770.97E3 ISG15--protein ligase HERC5-like isoform X1 n=2... [more]
A0A1B6EUU4_9HEMI8.240e-770.00Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
UPI001EE9B12C9.480e-770.00secretion-regulating guanine nucleotide exchange f... [more]
A0A1B6LKJ4_9HEMI1.770e-666.67Uncharacterized protein n=1 Tax=Graphocephala atro... [more]
UPI001C924AE01.790e-667.74E3 ubiquitin-protein ligase HERC2-like isoform X1 ... [more]
A0A3S2N2M3_ORYJA1.790e-657.58HECT domain-containing protein n=4 Tax=Oryzias Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig96234contigS-dermatodea_contig96234:345..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7FTN1
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925421.2979274-CDS-S-dermatodea_contig96234:344..4821622925421.2979274-CDS-S-dermatodea_contig96234:344..482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96234 345..482 -
1694079921.838128-CDS-S-dermatodea_contig96234:344..4821694079921.838128-CDS-S-dermatodea_contig96234:344..482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96234 345..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig96234.17640.1prot_S-dermatodea_contig96234.17640.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig96234 345..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig96234.17640.1

>prot_S-dermatodea_contig96234.17640.1 ID=prot_S-dermatodea_contig96234.17640.1|Name=mRNA_S-dermatodea_contig96234.17640.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
AAVAALGQVSCGARHTLAITSDGQLFAWGDNRRGQCGLPWPPSSPS
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mRNA from alignment at S-dermatodea_contig96234:345..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig96234.17640.1 ID=mRNA_S-dermatodea_contig96234.17640.1|Name=mRNA_S-dermatodea_contig96234.17640.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig96234:345..482- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGTGGCGGCGCTGGGGCAGGTGTCTTGCGGGGCGAGGCACACCCT
CGCCATCACCTCCGACGGGCAGCTCTTCGCCTGGGGAGACAACCGCCGCG
GGCAGTGCGGCCTCCCGTGGCCACCTTCCTCCCCTTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig96234:345..482-

>mRNA_S-dermatodea_contig96234.17640.1 ID=mRNA_S-dermatodea_contig96234.17640.1|Name=mRNA_S-dermatodea_contig96234.17640.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig96234:345..482- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGTGGCGGCGCTGGGGCAGGTGTCTTGCGGGGCGAGGCACACCCT
CGCCATCACCTCCGACGGGCAGCTCTTCGCCTGGGGAGACAACCGCCGCG
GGCAGTGCGGCCTCCCGTGGCCACCTTCCTCCCCTTCCGCGGCGGTGGCG
GCGCTGGGGCAGGTGTCTTGCGGGGCGAGGCACACCCTCGCCATCACCTC
CGACGGGCAGCTCTTCGCCTGGGGAGACAACCGCCGCGGGCAGTGCGGCC
TCCCGTGGCCACCTTCCTCCCCTTCC
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