mRNA_S-dermatodea_contig9601.17622.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9601.17622.1
Unique NamemRNA_S-dermatodea_contig9601.17622.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 468 bits (1203), Expect = 7.080e-147
Identity = 243/329 (73.86%), Postives = 266/329 (80.85%), Query Frame = 2
Query:   23 GSAPVQEPPRLKGLVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMA----DLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            G AP  EPPRLK LV VLRRLGVPVLELAFFP+EQRP LVV DPNEA+RGAL A HAL++TLAPPY                          ++IASGEDHGRD RGRKLRLRWGAL P DMDAL++GLSKPSDS  P+ FPPSELDKLRDLPVWKTLSGKRVAVD  RHFSL+ GGDVA LPLPPGASDRLLAPSPE+SDLIRDIGVEQV H GVVARFVLPELG V P+DR +LL HVR HWA LK++Q LV+ FKE +FIPV G+ +KA+KLFDPR+ VLKEIFGDEPDAFP GEF EESWLDVLVD+GL+NKLDR TILQCA KV
Sbjct: 3388 GPAPA-EPPRLKVLVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDHGRDARGRKLRLRWGALSPEDMDALLEGLSKPSDSSPPVGFPPSELDKLRDLPVWKTLSGKRVAVDRQRHFSLAAGGDVAHLPLPPGASDRLLAPSPELSDLIRDIGVEQVDHPGVVARFVLPELGTVPPDDRHKLLHHVRVHWAELKENQDLVNQFKEVAFIPVNGVPTKASKLFDPRTVVLKEIFGDEPDAFPAGEFGEESWLDVLVDIGLKNKLDRDTILQCAKKV 3715          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 6.900e-105
Identity = 190/316 (60.13%), Postives = 212/316 (67.09%), Query Frame = 2
Query:   62 LVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMA----DLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            LV VLRRLGVPVLELAFFP+EQRP LVV DPNEA+RGAL A HAL++TLAPPY                          ++IASGEDHGRD RGRKLRLRWGAL P DMDAL+Q                                         R F    GGD+    LP G SDRLLAPSPE+SDLIRDIGVEQV H GVVARFVLPELG V P+DR +LL HVR HWA LK++Q LV+ FKE +FIPV G+ +KA+KLFDPR+ VLKEIFGDEPDAFP+GEF EE WLDVLVD+GL+NKLDR TILQCA KV
Sbjct: 1316 LVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDHGRDGRGRKLRLRWGALSPEDMDALLQ-----------------------------------------RQFRQGTGGDLTSFSLPSGTSDRLLAPSPELSDLIRDIGVEQVDHPGVVARFVLPELGTVPPDDRHKLLHHVRVHWAELKENQDLVNQFKEVAFIPVNGVPTKASKLFDPRTLVLKEIFGDEPDAFPSGEFGEEPWLDVLVDIGLKNKLDRDTILQCAKKV 1590          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A7S3YA36_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA36_HETAK)

HSP 1 Score: 207 bits (526), Expect = 6.780e-61
Identity = 122/318 (38.36%), Postives = 178/318 (55.97%), Query Frame = 2
Query:   92 PVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGD---------------VADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFA-EESWLDVLVDVGLRNKLDRQTILQCATKV 997
            PV+ELA+FP +QR +LV  D   A R  L + H LR+   P YP+ E                    +   E+ G        RLRWG+L P  MD  +Q LS  ++S   +   PS+ DK R LP ++TLSG RVA+       LS G D               +  LPLPP A++RLLAP P + DL +D+GV ++  +G++ARF+LP  GA++ ++++ LL  V  +W  LK+++ LVDA +E  F+      ++A  L+DPR+E+L++IF D P AFP   FA   +WL VL DVGLR  +D++T L+CA ++
Sbjct:    2 PVVELAYFPGDQRAALVEQDDQAATRAILSSLHDLRSATGPSYPLDEG-------------------VGGVEEAGNP------RLRWGSLSPTQMDDFLQDLSHGANSSM-VSLAPSDRDKFRALPAFETLSGSRVALVAPGRGILSRGNDDQFYRLDRDSSAGLDLEALPLPPAATERLLAPKPRLQDLYQDLGVARLGGAGLLARFLLPSFGALTEQEKEALLAAVVVNWEALKEERELVDALREVPFLDG----ARAGALYDPRNELLRDIFADAPRAFPPARFAGSPAWLAVLADVGLRTGIDKETFLECARRL 289          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.310e-56
Identity = 126/331 (38.07%), Postives = 180/331 (54.38%), Query Frame = 2
Query:   47 PRLKGLVAVLRRLGVPVLELAFFPEEQRPSLV----VSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVD--------CARHFSLSNGGDVAD-LPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKG-MLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            PRL+ L  +L  LG PVL+ +F P E R ++     V+ P+ AAR ALH  H+LR+   PPYP+            +  AA  AD  A+ +  G   R ++ RLRW  L   D +AL+  L +P      +   PS+  KL++LPVW+T++G  V +          A   + + G +VA  LPLPP A   LLA SP + D+ RD+ +E+++    +AR VLPEL  ++P DR  +LQ+V  HW+ L  +  L +   +  F+ V G       KL DPR+ V+  IF D PD FP G FA+ +WLDVL D+GL    +R T L CA K+
Sbjct: 4676 PRLRQLRQLLHELGAPVLDFSFVPCETRNAVATAGGVTGPDAAARMALHGLHSLRSERTPPYPLP---------LRTPTAADAADDAAATQPQGAAAR-QQGRLRWSILSEADTEALLLALCRPGGEAGGLAVTPSDQQKLKELPVWRTMAGSSVCLSRPGANRAFFALERNAAEGENVAGGLPLPPSAQSMLLAHSPVLDDIYRDMQIERISMGDTLARMVLPELMRMTPADRDAVLQYVLEHWSQLSANAELKEKLGKVPFVTVSGDRRVLPEKLLDPRNAVMASIFDDAPDMFPQGAFAQPAWLDVLADLGLHKSFNRDTFLLCAKKL 4996          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.400e-40
Identity = 92/229 (40.17%), Postives = 139/229 (60.70%), Query Frame = 2
Query:  341 RLRWGALRP---PDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM------LSKANKLFDPRSEVLKEIFGDEP-DAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            RL WG L      D D L+  L  P   G P+VF P++++K+R  P+++T+SG+RVA+  +  F + +GG  AD PL       LL P   + DL RD+GVE +   GV+ RF+LP+   ++ ED+ +LL+    +W  LK++ S+V+  KE +FIPV         L KA++LFDPR+E+L  IF +E  + FP   F  + WL +L DVGL+ +LDR+T L+CA ++
Sbjct:  472 RLAWGELAAGGSSDADDLLLRLYSP---GVPLVFSPTDVEKMRSFPLYETVSGERVALG-SEEFVVLSGGSAADFPLTVTTGAFLLKPKETLKDLYRDLGVESLDDVGVLHRFLLPDFERLAEEDQGRLLKFTVGNWPRLKENTSVVERLKETAFIPVTPAAEAAPRLVKASELFDPRNELLGAIFEEEEGEVFPPPAFRSDEWLALLSDVGLQAELDRETFLECARRL 696          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: W7U1E4_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.990e-22
Identity = 93/353 (26.35%), Postives = 148/353 (41.93%), Query Frame = 2
Query:   62 LVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSG-APIVFPPSELDKLRDLPVWKTLSGKRVA----------------------------VDCA---RHFSLSNGG--------DVADLPLPPGASD-RLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWAT--LKQDQSLVDAFKEASFIPV-KGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCA 988
            L+ +L R   P+LELAFFP+    SLV +D  +  R  +   H  +                                           G KL    GA    ++D +++  +  S  G        SEL+KLR LP ++T++G RV                             +D +   R FS   G         +V      P  ++ ++L     + DL +D+GV  +  + ++ R ++P+L  + P  R ++L  ++  W +  L  D + V+A   A FI   KG L+ A+   DPR+E+L+E+F DEP  FP GEF    WL +L  +GL+ K D +  L+CA
Sbjct: 4399 LLRLLSRARAPLLELAFFPKAVVDSLVTADNRDVTRAIITCMHVFKE------------------------------------------GLKLDNLSGA----EIDHMIRRCTTSSQDGNVATALTASELEKLRQLPFFETITGNRVPLVQENGPYVVLDDRQIGRDRFLDEIMAIIDMSTTFRQFSDRPGSVVVQRTRFEVNSCDNSPALTECKVLKRKTALEDLYQDLGVATLKKTEILTRLLIPDLALMDPGLRSRVLDLIKNMWISEKLASDTAFVEALTAAKFIATEKGDLAMASAFLDPRNELLREVFEDEPSVFPPGEFGSRDWLPILGVLGLKTKCDGKIFLECA 4705          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A7S0YY12_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YY12_9CRYP)

HSP 1 Score: 103 bits (256), Expect = 3.710e-21
Identity = 56/189 (29.63%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  431 FPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            F   E   LR LP++++ SG  V +    +F    G   A      G  + LL    +       +GVE++  + ++ RF LP   ++   +R + ++ +  +W  + +  +LVD  +   F+   G L +A++LFDP+ ++L+ +FGD+P  FPTG+FA + WL VL  +GL++ +     +QCA +V
Sbjct:  104 FTQQEAATLRSLPIFESRSGAFVPLSGGDYFICPPGMSAA------GGEEALL--KHQYPSFYASLGVEELDETALLERFTLPSFPSLGERERGEAVEKILRNWPRVSERPALVDKLRGLPFVETHGALLRADQLFDPKRQLLRTVFGDDP-VFPTGKFASDEWLPVLRALGLQSHVGPDVFVQCARRV 283          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: D0ABB5_9ORYZ (OO_Ba0005L10-OO_Ba0081K17.24 protein n=1 Tax=Oryza officinalis TaxID=4535 RepID=D0ABB5_9ORYZ)

HSP 1 Score: 101 bits (251), Expect = 8.800e-20
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            ELD LR+LP++KT++G   ++  + H  LS             A  R L+ +      ++ +GVEQ++   ++ RF LP  G  S ++++ +L ++ A+W  L+ + S+V+  KE +F+         L K  +L DP   +L  +F  E   FP   F  + WL +L   GLR   +   I+QCATK+
Sbjct: 3641 ELDVLRELPIYKTVTGTYTSLSGSDHCILSPTAFFHP------ADSRCLSSTANADIFLQALGVEQLSDQEILLRFALPGFGNKSAQEQEDILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCTELFKPRELLDPSDALLTSVFSGERHKFPAERFMSDGWLVILRKAGLRTSTEADMIVQCATKI 3823          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: J3M2L5_ORYBR (RING-type domain-containing protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3M2L5_ORYBR)

HSP 1 Score: 100 bits (249), Expect = 1.600e-19
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            +LD LR+LP++KT++G   ++  + H  +S           P  S R L  +   +  ++ +GVEQ+T   ++ RF LP  G  S +D++ +L ++ A+W  L+ + S+V+  KE +F+         L K  +L DP   +L  +F  E   FP   F  + WL +L   GLR   +   I+QCATK+
Sbjct: 3886 QLDVLRELPIYKTVTGTYTSLSGSDHCIISPTAFFH-----PNDS-RCLTSTANANLFLQTLGVEQLTDQEILVRFALPGFGNKSAQDQEDILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCKDLFKPRELLDPSDALLTSVFSGERHKFPAERFMSDGWLVILRKAGLRTSTEADMIVQCATKI 4068          
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6G1BSY2_9ORYZ (J domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BSY2_9ORYZ)

HSP 1 Score: 100 bits (249), Expect = 1.600e-19
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
            ELD LR+LP++KT++G   ++  + H  LS                R L+ +      ++ +GVEQ++   ++ RF LP  G  S ++++ +L ++ A+W  L+ + S+V+  KE +F+         L K  +L DP   +L  +F  E   FP  +F  + WL +L   GLR   +  TI+QCATKV
Sbjct: 3738 ELDVLRELPMYKTVTGTYTSLSGSDHCILSPTAFFRP------TDSRCLSSTANADLFLQALGVEQLSDQEILVRFALPGFGNKSAQEQEGILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCTELFKPRELLDPSDALLTSVFSGERLKFPAEKFMSDGWLVILRKAGLRTSTEADTIVQCATKV 3920          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K688_9PHAE7.080e-14773.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG4_ECTSI6.900e-10560.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3YA36_HETAK6.780e-6138.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YL62_9STRA5.310e-5638.07RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6U4DDX2_9STRA7.400e-4040.17Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7U1E4_9STRA2.990e-2226.35Ubiquitin-associated/translation elongation factor... [more]
A0A7S0YY12_9CRYP3.710e-2129.63Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
D0ABB5_9ORYZ8.800e-2030.69OO_Ba0005L10-OO_Ba0081K17.24 protein n=1 Tax=Oryza... [more]
J3M2L5_ORYBR1.600e-1931.22RING-type domain-containing protein n=2 Tax=Oryza ... [more]
A0A6G1BSY2_9ORYZ1.600e-1931.22J domain-containing protein n=1 Tax=Oryza meyerian... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9601contigS-dermatodea_contig9601:4399..6689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue3.8e-94
Seed eggNOG ortholog2880.D8LJG4
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size997
Cds size984
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9601.17622.1prot_S-dermatodea_contig9601.17622.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9601 4412..6689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.269093-UTR-S-dermatodea_contig9601:4398..44111622925420.269093-UTR-S-dermatodea_contig9601:4398..4411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9601 4399..4411 +
1694079921.0448701-UTR-S-dermatodea_contig9601:4398..44111694079921.0448701-UTR-S-dermatodea_contig9601:4398..4411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9601 4399..4411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.2810862-CDS-S-dermatodea_contig9601:4411..47891622925420.2810862-CDS-S-dermatodea_contig9601:4411..4789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 4412..4789 +
1694079921.0674145-CDS-S-dermatodea_contig9601:4411..47891694079921.0674145-CDS-S-dermatodea_contig9601:4411..4789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 4412..4789 +
1622925420.29112-CDS-S-dermatodea_contig9601:5271..54621622925420.29112-CDS-S-dermatodea_contig9601:5271..5462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 5272..5462 +
1694079921.083753-CDS-S-dermatodea_contig9601:5271..54621694079921.083753-CDS-S-dermatodea_contig9601:5271..5462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 5272..5462 +
1622925420.3045356-CDS-S-dermatodea_contig9601:5757..59621622925420.3045356-CDS-S-dermatodea_contig9601:5757..5962Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 5758..5962 +
1694079921.0968075-CDS-S-dermatodea_contig9601:5757..59621694079921.0968075-CDS-S-dermatodea_contig9601:5757..5962Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 5758..5962 +
1622925420.3185298-CDS-S-dermatodea_contig9601:6479..66891622925420.3185298-CDS-S-dermatodea_contig9601:6479..6689Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 6480..6689 +
1694079921.1082559-CDS-S-dermatodea_contig9601:6479..66891694079921.1082559-CDS-S-dermatodea_contig9601:6479..6689Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 6480..6689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9601.17622.1

>prot_S-dermatodea_contig9601.17622.1 ID=prot_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=328bp
MGGGSAPVQEPPRLKGLVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEA
ARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDH
GRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRD
LPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSD
LIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQ
SLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAE
ESWLDVLVDVGLRNKLDRQTILQCATKV
back to top

mRNA from alignment at S-dermatodea_contig9601:4399..6689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9601.17622.1 ID=mRNA_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2291bp|location=Sequence derived from alignment at S-dermatodea_contig9601:4399..6689+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCCGTCGGCTATGGGAGGGGGCAGTGCTCCTGTCCAGGAGCCCCCGC GCCTCAAGGGCTTGGTGGCTGTGTTGCGTAGATTGGGGGTGCCGGTGCTG GAGCTGGCGTTCTTTCCTGAGGAGCAGCGGCCTTCCTTGGTCGTGAGCGA TCCGAACGAGGCTGCGCGCGGGGCACTACACGCCACCCACGCGCTTAGGA ACACCCTCGCCCCGCCGTATCCGATATCCGAGGCGTGCGAGGCTAGGAGG CAAGGGGCAAGCTCGGCGGCAGCTGCGGCAATGGCCGATCTAATCGCCAG CGGCGAGGACCATGGGCGAGACGTGAGAGGGAGGAAGCTGAGGCTACGGT GGGGGGCACTCCGACCACCGGACATGGACGCGCTTGTGCAGGTGCGTCGC AGGAGATGGGGGAGTGGGGCTCGGTGGGGGGGGGCTCGGTTGTGCGCGAG GTCGGTGCGTGCTACACTTCATCGCCCGCGCGAATGTCTACTGCGAAAAT TAGAGGGGGGGGGGAGGGGGGAGGGGGTACGTCTATTTCTTGGAGCTGGT GACTGTATTCATTGATACGGAGAACTGAGGTACTGTATGCGTAGTCCTGG GTGAGATTTTGGCGCTCATGGTGTTCCCGACGGCGTCAGCACAAGGAAGC AATCAGCGTTAAGTTCGGGCCGGTGCTCATATTGTTAATATGTTTCTACC CTACAACTCCGTTACTGCGGCCATACCGGTGCACATGTGGGGTCACAGGC TCTCTTGCGTGACGAAAGGGTGGGGATCCTGACAAGAATTTTGACTGAAA TTTCCCCCTTCCGAGACCAACCATCAATCCTAAGAAACACAACGGCTCTA CCGTTCCCTTCAACGCCGCACAGGGTCTCTCAAAACCCTCCGACTCAGGG GCCCCCATCGTCTTCCCGCCATCCGAGCTGGATAAGTTGCGTGACTTACC CGTGTGGAAAACGCTTTCCGGCAAGCGTGTAGCTGTCGATTGCGCGCGAC ACTTTAGTCTCAGCAACGGAGGAGACGTTGCCGACCTTCCCCTGCCTCCA GGCGCCTCTGACAGGTGAGGTGGTAATGAGAGCTGTTCGCGCTTGTGACG GGGCTCGGGGTGGTGGTACACGTCCGCTAACACCCGCCCGGCGGTTGGAG CATCGTGAATCGCGACCAAATACAGGAACCACCATGGTCGTAAAGGTCGT CCCTAATGACGTAGGCACGGACAAAATGTGCGCCGTCACTTCAAACGGTT CGTTCAAAAATAAACCTGATTGAAAAATTCATTATTCCCATCCTCCTCGC TATCCCGGTTACCCCCCCCCGCCCCCCCCTCCGTAACGCCAAATCACACG TCACCGCAGGCTGTTGGCACCGTCCCCGGAAGTGTCCGACCTCATCCGCG ACATCGGAGTGGAGCAGGTTACCCACTCCGGAGTTGTCGCTCGTTTCGTT CTGCCCGAGCTTGGTGCCGTTTCGCCCGAGGATAGGAAGCAGCTGCTGCA GCATGTGCGCGCGCACTGGGCCACTCTGAAGCAGGACCAGTCGCTCGTGG ATGCTTTCAAGGAGGTGCGTGCAGTCTGTTTGGTTTTTGGTTTTGCCCCC ACAAGTGAACCGAACCCTTGTTGTTTGCAAGAGCGACGTGGATGGGGAAG TTAGGGATTCACCTGGTGTAAGCATGTCGCGCTCATTTATGTTTGGCACA GGTACATTAAGATGTTTTCTGACACGGTATTAACGACGGATCATGGTCGA CATCATTTGGCCTGATAAGTTTTAGACGCGGATAGTAAGAAGCAGGGCTT GAGAACGTTCGGGAGAAGGGAAAAACGGCTTGGCCTCGTGCTGCGTGCAA GTTCCGACAGCAGTTTTTTTCCCCTTTGGCGAGGGATACAAATAATCAGC CTTTGCCTTCTATGCAGCATCTTATACGAGAAGGCCAGGCCTGGAATGTA CCCTTTTCGCACCGCCGCGGTATCTTCGCCTGGGGCACATCATATCATAC GAGTCTAGCTCAAGGTTGTGGCCTACCAGCACTTAACCCGACCAAAAAAC ATGATTGCGTCCACACGCGGGTTTTCCACAGGCATCGTTTATTCCGGTAA AGGGGATGCTGAGCAAGGCGAACAAGCTGTTCGATCCCCGTTCCGAGGTT TTGAAGGAGATTTTTGGGGACGAGCCGGATGCGTTCCCGACGGGAGAGTT CGCGGAAGAAAGCTGGCTGGACGTTTTGGTGGACGTCGGCCTGAGGAACA AGCTGGACAGGCAGACGATTCTCCAGTGCGCCACGAAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9601:4399..6689+

>mRNA_S-dermatodea_contig9601.17622.1 ID=mRNA_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at S-dermatodea_contig9601:4399..6689+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGGGGGCAGTGCTCCTGTCCAGGAGCCCCCGCGCCTCAAGGGCTT
GGTGGCTGTGTTGCGTAGATTGGGGGTGCCGGTGCTGGAGCTGGCGTTCT
TTCCTGAGGAGCAGCGGCCTTCCTTGGTCGTGAGCGATCCGAACGAGGCT
GCGCGCGGGGCACTACACGCCACCCACGCGCTTAGGAACACCCTCGCCCC
GCCGTATCCGATATCCGAGGCGTGCGAGGCTAGGAGGCAAGGGGCAAGCT
CGGCGGCAGCTGCGGCAATGGCCGATCTAATCGCCAGCGGCGAGGACCAT
GGGCGAGACGTGAGAGGGAGGAAGCTGAGGCTACGGTGGGGGGCACTCCG
ACCACCGGACATGGACGCGCTTGTGCAGATGGGAGGGGGCAGTGCTCCTG
TCCAGGAGCCCCCGCGCCTCAAGGGCTTGGTGGCTGTGTTGCGTAGATTG
GGGGTGCCGGTGCTGGAGCTGGCGTTCTTTCCTGAGGAGCAGCGGCCTTC
CTTGGTCGTGAGCGATCCGAACGAGGCTGCGCGCGGGGCACTACACGCCA
CCCACGCGCTTAGGAACACCCTCGCCCCGCCGTATCCGATATCCGAGGCG
TGCGAGGCTAGGAGGCAAGGGGCAAGCTCGGCGGCAGCTGCGGCAATGGC
CGATCTAATCGCCAGCGGCGAGGACCATGGGCGAGACGTGAGAGGGAGGA
AGCTGAGGCTACGGTGGGGGGCACTCCGACCACCGGACATGGACGCGCTT
GTGCAGGGTCTCTCAAAACCCTCCGACTCAGGGGCCCCCATCGTCTTCCC
GCCATCCGAGCTGGATAAGTTGCGTGACTTACCCGTGTGGAAAACGCTTT
CCGGCAAGCGTGTAGCTGTCGATTGCGCGCGACACTTTAGTCTCAGCAAC
GGAGGAGACGTTGCCGACCTTCCCCTGCCTCCAGGCGCCTCTGACAGGGT
CTCTCAAAACCCTCCGACTCAGGGGCCCCCATCGTCTTCCCGCCATCCGA
GCTGGATAAGTTGCGTGACTTACCCGTGTGGAAAACGCTTTCCGGCAAGC
GTGTAGCTGTCGATTGCGCGCGACACTTTAGTCTCAGCAACGGAGGAGAC
GTTGCCGACCTTCCCCTGCCTCCAGGCGCCTCTGACAGGCTGTTGGCACC
GTCCCCGGAAGTGTCCGACCTCATCCGCGACATCGGAGTGGAGCAGGTTA
CCCACTCCGGAGTTGTCGCTCGTTTCGTTCTGCCCGAGCTTGGTGCCGTT
TCGCCCGAGGATAGGAAGCAGCTGCTGCAGCATGTGCGCGCGCACTGGGC
CACTCTGAAGCAGGACCAGTCGCTCGTGGATGCTTTCAAGGAGGCTGTTG
GCACCGTCCCCGGAAGTGTCCGACCTCATCCGCGACATCGGAGTGGAGCA
GGTTACCCACTCCGGAGTTGTCGCTCGTTTCGTTCTGCCCGAGCTTGGTG
CCGTTTCGCCCGAGGATAGGAAGCAGCTGCTGCAGCATGTGCGCGCGCAC
TGGGCCACTCTGAAGCAGGACCAGTCGCTCGTGGATGCTTTCAAGGAGGC
ATCGTTTATTCCGGTAAAGGGGATGCTGAGCAAGGCGAACAAGCTGTTCG
ATCCCCGTTCCGAGGTTTTGAAGGAGATTTTTGGGGACGAGCCGGATGCG
TTCCCGACGGGAGAGTTCGCGGAAGAAAGCTGGCTGGACGTTTTGGTGGA
CGTCGGCCTGAGGAACAAGCTGGACAGGCAGACGATTCTCCAGTGCGCCA
CGAAGGTGGCATCGTTTATTCCGGTAAAGGGGATGCTGAGCAAGGCGAAC
AAGCTGTTCGATCCCCGTTCCGAGGTTTTGAAGGAGATTTTTGGGGACGA
GCCGGATGCGTTCCCGACGGGAGAGTTCGCGGAAGAAAGCTGGCTGGACG
TTTTGGTGGACGTCGGCCTGAGGAACAAGCTGGACAGGCAGACGATTCTC
CAGTGCGCCACGAAGGTG
back to top