mRNA_S-dermatodea_contig95553.17578.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95553.17578.1
Unique NamemRNA_S-dermatodea_contig95553.17578.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.400e-29
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG 180
            EKLSHCELLAVDEAAAIPLPLVK+LLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG
Sbjct:  306 EKLSHCELLAVDEAAAIPLPLVKRLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG 365
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.490e-27
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    4 KLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQG 180
            KL+HCELLA+DEAAAIPLPLVK LLGPYLVF+SSTVNGYEGTGRALSLKL+DQLRKQQG
Sbjct:  379 KLAHCELLAIDEAAAIPLPLVKALLGPYLVFMSSTVNGYEGTGRALSLKLVDQLRKQQG 437
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A482ULY8_9ARCH (Helicase_RecD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULY8_9ARCH)

HSP 1 Score: 102 bits (254), Expect = 4.350e-26
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    4 KLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEAL 189
            KL+  EL+A+DEAAAIPLP+VKKLLGPY VF+SST+NGYEGTGRALSLKLI+QLR+QQG +L
Sbjct:   94 KLAQAELVAIDEAAAIPLPVVKKLLGPYTVFMSSTINGYEGTGRALSLKLINQLRQQQGASL 155
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A8K1FEC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEC9_PYTOL)

HSP 1 Score: 105 bits (262), Expect = 5.500e-25
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKL+  ELLA+DEAAAIPLPLVKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG A
Sbjct:  377 EKLAQAELLAIDEAAAIPLPLVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 438
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A2D4BXV5_PYTIN (RNA cytidine acetyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV5_PYTIN)

HSP 1 Score: 105 bits (262), Expect = 5.510e-25
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKL+  ELLA+DEAAAIPLPLVKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG A
Sbjct:  743 EKLAQAELLAIDEAAAIPLPLVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 804
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: K8YNR7_NANGC (RNA cytidine acetyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YNR7_NANGC)

HSP 1 Score: 104 bits (260), Expect = 1.020e-24
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEAL 189
            EKLS  EL+AVDEAAAIPLPLVK+LLGPYLVFLSSTV GYEGTGR+LSLKL+ QLR+QQG A+
Sbjct:  311 EKLSQAELVAVDEAAAIPLPLVKRLLGPYLVFLSSTVTGYEGTGRSLSLKLVAQLREQQGRAM 373
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: K3XCC4_GLOUD (RNA cytidine acetyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC4_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 1.400e-24
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKL+  ELLA+DEAAAIPLP+VKKLLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG A
Sbjct:  377 EKLAQAELLAIDEAAAIPLPVVKKLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 438
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A5D6Y1L7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1L7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.600e-24
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKL+  ELLA+DEAAAIPLP+VK+LLGPYLVF+SST+NGYEGTGR+LSLKL+ QLR+QQG A
Sbjct:  377 EKLAQAELLAIDEAAAIPLPVVKQLLGPYLVFMSSTINGYEGTGRSLSLKLLQQLREQQGSA 438
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BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A6G0X9Q5_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9Q5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.610e-24
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKLS  ELLA+DEAAAIPLP+VK LLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG A
Sbjct:  376 EKLSQAELLAIDEAAAIPLPVVKNLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 437
[Close]
BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Match: A0A024U7Z3_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7Z3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.780e-24
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLKLIDQLRKQQGEA 186
            EKL+  ELLA+DEAAAIPLP+VK+LLGPYLVF+SST+NGYEGTGR+LSLKLI +LR+QQG A
Sbjct:  375 EKLAQAELLAIDEAAAIPLPVVKQLLGPYLVFMSSTINGYEGTGRSLSLKLIQKLREQQGSA 436
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95553.17578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE1.400e-2998.33RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A0A835Z409_9STRA1.490e-2791.53RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
A0A482ULY8_9ARCH4.350e-2679.03Helicase_RecD domain-containing protein n=1 Tax=ar... [more]
A0A8K1FEC9_PYTOL5.500e-2582.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BXV5_PYTIN5.510e-2582.26RNA cytidine acetyltransferase n=1 Tax=Pythium ins... [more]
K8YNR7_NANGC1.020e-2482.54RNA cytidine acetyltransferase n=3 Tax=Monodopsida... [more]
K3XCC4_GLOUD1.400e-2480.65RNA cytidine acetyltransferase n=1 Tax=Globisporan... [more]
A0A5D6Y1L7_9STRA2.600e-2479.03Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A6G0X9Q5_9STRA2.610e-2480.65RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]
A0A024U7Z3_9STRA4.780e-2479.03RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95553contigS-dermatodea_contig95553:180..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue7.9e-25
Seed eggNOG ortholog2880.D7FZ70
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.tRNA N-acetyltransferase activity
EggNOG OGsCOG1444@1,KOG2036@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925416.4873178-CDS-S-dermatodea_contig95553:179..3681622925416.4873178-CDS-S-dermatodea_contig95553:179..368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95553 180..368 -
1694079919.1823106-CDS-S-dermatodea_contig95553:179..3681694079919.1823106-CDS-S-dermatodea_contig95553:179..368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95553 180..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95553.17578.1prot_S-dermatodea_contig95553.17578.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95553 180..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95553.17578.1

>prot_S-dermatodea_contig95553.17578.1 ID=prot_S-dermatodea_contig95553.17578.1|Name=mRNA_S-dermatodea_contig95553.17578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
EKLSHCELLAVDEAAAIPLPLVKKLLGPYLVFLSSTVNGYEGTGRALSLK
LIDQLRKQQGEAL
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mRNA from alignment at S-dermatodea_contig95553:180..368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95553.17578.1 ID=mRNA_S-dermatodea_contig95553.17578.1|Name=mRNA_S-dermatodea_contig95553.17578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig95553:180..368- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAAGCTGTCCCACTGCGAGCTCCTAGCCGTGGACGAGGCGGCCGCGAT
CCCTCTCCCTCTCGTCAAGAAGCTCCTCGGGCCGTACCTGGTGTTCCTGT
CGTCCACGGTTAACGGCTACGAGGGGACGGGAAGGGCGCTCAGCCTCAAG
CTCATTGACCAGCTCAGGAAGCAGCAGGGTGAGGCACTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig95553:180..368-

>mRNA_S-dermatodea_contig95553.17578.1 ID=mRNA_S-dermatodea_contig95553.17578.1|Name=mRNA_S-dermatodea_contig95553.17578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig95553:180..368- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAAGCTGTCCCACTGCGAGCTCCTAGCCGTGGACGAGGCGGCCGCGAT
CCCTCTCCCTCTCGTCAAGAAGCTCCTCGGGCCGTACCTGGTGTTCCTGT
CGTCCACGGTTAACGGCTACGAGGGGACGGGAAGGGCGCTCAGCCTCAAG
CTCATTGACCAGCTCAGGAAGCAGCAGGGTGAGGCACTTGAGAAGCTGTC
CCACTGCGAGCTCCTAGCCGTGGACGAGGCGGCCGCGATCCCTCTCCCTC
TCGTCAAGAAGCTCCTCGGGCCGTACCTGGTGTTCCTGTCGTCCACGGTT
AACGGCTACGAGGGGACGGGAAGGGCGCTCAGCCTCAAGCTCATTGACCA
GCTCAGGAAGCAGCAGGGTGAGGCACTT
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