mRNA_S-dermatodea_contig9553.17576.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9553.17576.1
Unique NamemRNA_S-dermatodea_contig9553.17576.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D7G014_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G014_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.570e-20
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 3 
Query:  426 ANSVLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKG-----DYEC--------AMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPDGE 704
            +++ LRG+GE LL++V+ESA  EQL SWLRVPLEHAAA       ++ C         +KLL AGAD  VRR  V DRSPL AAA+ GN  +VS+LL++GSAPDGE
Sbjct:   12 SSNPLRGLGEELLTIVWESASSEQLGSWLRVPLEHAAAXXXXXXPEHRCNDDSSPALCLKLLEAGADAFVRRGPVLDRSPLLAAAQAGNAAVVSALLDNGSAPDGE 117
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.360e-9
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 3 
Query:  438 LRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            L G+G  +  +V   A REQ A WLRVPLEHAA++G+     +LL AGAD          R+ L AAA GGN D++S+L+  G+  D
Sbjct:   10 LDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGAD 96
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 5.680e-8
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:  435 VLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            + +GMG  +  +V  SA  +Q   WLRVPLEHAAA+G+      LL AGAD     +    R+ + AAA GG+  +VS+LL +G+ PD
Sbjct:    9 LFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPD 96
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D7FT34_ECTSI (Ankyrin 2, neuronal isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT34_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-7
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:  438 LRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            LR     L++VV + A  +Q A W+R+P+EHAAA+G ++    LL AG            R+ L AAA+GGNG++VS++L +G+ PD
Sbjct:    8 LRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVTALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPD 94
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.740e-7
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:  456 TLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            ++  +V E A  EQ   WLRVPLEHAAAKG+ +   +L+ AGAD C        R+ L AAA G    +V +LLE+G+  D
Sbjct:    3 SIFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGATDD 83
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.870e-7
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 3 
Query:  435 VLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            +L+GM   +  +V   A  +Q   WLRVPLEHAAA+G+      LL AGAD         DR+ + AAA GG+  +VS+LL +G+ PD
Sbjct:    9 LLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPD 96
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.680e-7
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 3 
Query:  435 VLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD 698
            VL G    + +++   A  EQ   WLR PLEHAAA+G++    KLL AGAD          R+ L AAA GGN D+V++LL +G  PD
Sbjct:    7 VLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPD 94
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BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-5
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3 
Query:  435 VLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGDYECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESG 686
            +L+GM   +  +V  SA  +Q   WLR+PLEHAAA+G+      LL AGAD          R+ + AAA GG+  +VS+LL +G
Sbjct:    9 LLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAG 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9553.17576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G014_ECTSI1.570e-2055.66Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KNQ1_9PHAE8.360e-944.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI5.680e-843.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FT34_ECTSI1.180e-741.38Ankyrin 2, neuronal isoform 4 n=1 Tax=Ectocarpus s... [more]
D7G6Z7_ECTSI1.740e-744.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRS0_ECTSI1.870e-743.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI2.680e-744.32Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LS36_ECTSI1.220e-541.67Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9553contigS-dermatodea_contig9553:1524..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7G014
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9553.17576.1prot_S-dermatodea_contig9553.17576.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9553 1524..1874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925416.3862967-CDS-S-dermatodea_contig9553:1523..18741622925416.3862967-CDS-S-dermatodea_contig9553:1523..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9553 1524..1874 -
1694079919.1148293-CDS-S-dermatodea_contig9553:1523..18741694079919.1148293-CDS-S-dermatodea_contig9553:1523..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9553 1524..1874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925416.398149-UTR-S-dermatodea_contig9553:1874..19881622925416.398149-UTR-S-dermatodea_contig9553:1874..1988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9553 1875..1988 -
1694079919.1283586-UTR-S-dermatodea_contig9553:1874..19881694079919.1283586-UTR-S-dermatodea_contig9553:1874..1988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9553 1875..1988 -
1622925416.413572-UTR-S-dermatodea_contig9553:2935..32191622925416.413572-UTR-S-dermatodea_contig9553:2935..3219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9553 2936..3219 -
1694079919.1375844-UTR-S-dermatodea_contig9553:2935..32191694079919.1375844-UTR-S-dermatodea_contig9553:2935..3219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9553 2936..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9553.17576.1

>prot_S-dermatodea_contig9553.17576.1 ID=prot_S-dermatodea_contig9553.17576.1|Name=mRNA_S-dermatodea_contig9553.17576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MNCDRPPPLANSVLRGMGETLLSVVFESAPREQLASWLRVPLEHAAAKGD
YECAMKLLAAGADPCVRREIVADRSPLAAAARGGNGDIVSSLLESGSAPD
GEGWETGGGACNSGDSS
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mRNA from alignment at S-dermatodea_contig9553:1524..3219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9553.17576.1 ID=mRNA_S-dermatodea_contig9553.17576.1|Name=mRNA_S-dermatodea_contig9553.17576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1696bp|location=Sequence derived from alignment at S-dermatodea_contig9553:1524..3219- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTATGATGAGCAGACCACGACTTGTTTAGAGAGCAGACAAGGCACGCGG
CTCAGCACAAATCGCAATCCTGCCCCACACCCGTCGGCCTCAGCTCACTA
GTGCACCAGGCCACACCACGGAGGGAGCACGACGCTCGTGTGGTGGAAGA
ATATCAGCGCGTCGGGATTGGAAAGCACGGCTGTACACCGATACTGATTG
CTCATCGTCAGCAGCGTTGCCATCGTTCCTCTTCAGGAGCGCTCGCTCGC
TGCTCCGCTTGGGTTGGCGGACGCACATGCACATGTGAGCTCGGGCGGGT
CCCTCGCTTTAGATTGCCCCGGTTAAACTGTGCTCGCAAACCTTGAGGCT
GCGCGTCCTGTTGGTTGCCGCTGCTTCGCGGCTGCGATGCTCTGCGATGC
TCTGCGATACTCTGCGATGCATGCCCACCGCTTATCCTCTGCGGCGGTAT
CATAGCCTTTGCGTACCTTGCCGACTTCAGCAAGTTCCAGAACGGCACTA
TAATAGTATCATGCCGCCAGGCATCCTTGCGACACTCTAGTCGATGGGCT
CGTTTGTTAGTGCGCCGCTCTCTCTGGGATTCGGGATTCCTAGCCAGGTG
GAATTGCGTACCTCGAGCATGTCGTGGGATTCGGAACTGTTGCGATCATG
CCCACATACAACCTATTATAGTGCCAGCATGCATTCCATTCTCCAGCTCT
TGTGTGTTGCTGGGGCGCCGCAATCAAAAGCCTAAAACTGCTATATTATC
GTATGTATCGTATGTTTAGCAGGGCAATTTCAGACCCCACCCATGACCCT
TTTCCTCCGCCTGAGGGAGTGTTCTTCTAGTCCATCAGTCGTCTGATACT
CAGAAGTGGGCCCATATTCATCTTTGTTGCGACCACGGGATGGATGCGCC
TCTAGCCAGCTGTGCCCGGTATATAGCCCACCCCAAAGGCAGCACACATG
CGCACTCCCAAGCCACACGTTTTTGCCTTTGGTGGGGTGGGTGCGGTGGC
TGCCAGCACCCAGAACCGGTCCGTGCGCCCTCCGTCCCTGTTCAAATTCC
ATTACAAGTATCATACATGAGTGACCGACTCGGAGAGATCGTCGGGGCGC
ACCCCTGCGCGCCACGCGCCACGCCTCTGCACCTCTGCACAAATATGACA
CCGAGAAAACTACGCCGATTGTATATCTGAGGAGCCACATGCGTCTTGTC
TGCCCGATGTTCACGTGTGCACTATTCCTAGTGTGGGGGTGACCTTCGGA
AGCTATAATACCGATTCGCCGACACGTAGCCCGGTGTCATCCCATCGGAG
CCCCGTAGCGAGCAGCTCGAGCAAACGCACCAGCGCAGTAGCACAATGAA
CTGCGACCGCCCGCCACCACTAGCCAACAGCGTGCTGCGCGGAATGGGAG
AGACTCTGCTCTCGGTCGTGTTCGAGTCCGCGCCGCGCGAGCAGCTGGCC
AGCTGGCTGCGAGTACCCCTTGAGCACGCCGCTGCGAAGGGAGACTACGA
GTGCGCGATGAAGCTCCTCGCGGCGGGCGCAGACCCTTGTGTCCGACGTG
AAATCGTGGCTGATCGCTCGCCGCTCGCCGCGGCTGCTAGAGGCGGTAAC
GGCGACATCGTATCCTCTCTTCTCGAGAGCGGTTCCGCGCCCGACGGGGA
AGGCTGGGAGACAGGTGGTGGTGCCTGCAACAGCGGCGACAGCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9553:1524..3219-

>mRNA_S-dermatodea_contig9553.17576.1 ID=mRNA_S-dermatodea_contig9553.17576.1|Name=mRNA_S-dermatodea_contig9553.17576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig9553:1524..3219- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACTGCGACCGCCCGCCACCACTAGCCAACAGCGTGCTGCGCGGAAT
GGGAGAGACTCTGCTCTCGGTCGTGTTCGAGTCCGCGCCGCGCGAGCAGC
TGGCCAGCTGGCTGCGAGTACCCCTTGAGCACGCCGCTGCGAAGGGAGAC
TACGAGTGCGCGATGAAGCTCCTCGCGGCGGGCGCAGACCCTTGTGTCCG
ACGTGAAATCGTGGCTGATCGCTCGCCGCTCGCCGCGGCTGCTAGAGGCG
GTAACGGCGACATCGTATCCTCTCTTCTCGAGAGCGGTTCCGCGCCCGAC
GGGGAAGGCTGGGAGACAGGTGGTGGTGCCTGCAACAGCGGCGACAGCAG
CATGAACTGCGACCGCCCGCCACCACTAGCCAACAGCGTGCTGCGCGGAA
TGGGAGAGACTCTGCTCTCGGTCGTGTTCGAGTCCGCGCCGCGCGAGCAG
CTGGCCAGCTGGCTGCGAGTACCCCTTGAGCACGCCGCTGCGAAGGGAGA
CTACGAGTGCGCGATGAAGCTCCTCGCGGCGGGCGCAGACCCTTGTGTCC
GACGTGAAATCGTGGCTGATCGCTCGCCGCTCGCCGCGGCTGCTAGAGGC
GGTAACGGCGACATCGTATCCTCTCTTCTCGAGAGCGGTTCCGCGCCCGA
CGGGGAAGGCTGGGAGACAGGTGGTGGTGCCTGCAACAGCGGCGACAGCA
GC
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