mRNA_S-dermatodea_contig9539.17561.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9539.17561.1
Unique NamemRNA_S-dermatodea_contig9539.17561.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 6.080e-122
Identity = 186/190 (97.89%), Postives = 188/190 (98.95%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASL DANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQD+DAQVVANCVVVLNEIMADAGGMATN AI+HHLLGRLEDFNEWGVCHILALVSR
Sbjct:   66 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLTDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDSDAQVVANCVVVLNEIMADAGGMATNTAIVHHLLGRLEDFNEWGVCHILALVSR 255
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: F0Y5E8_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5E8_AURAN)

HSP 1 Score: 291 bits (745), Expect = 9.330e-93
Identity = 140/190 (73.68%), Postives = 166/190 (87.37%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLFTEM+++IETRDLVVKKMVY YLCTYA +KP++ +MCINTLQRDC+N DPMVRGLALRSLCSLRLP ++EYI  PL+ASL DA+SYVRKTGVM ILK++H+ P++V  G +VD LY+ML+D D  VVANC+VVLNEIM D GG+A N AI+HHLLGRL DFNEWG+C +L LV+R
Sbjct:   55 KVIAYMTLGIDVSRLFTEMVMSIETRDLVVKKMVYHYLCTYAHEKPEMGLMCINTLQRDCSNDDPMVRGLALRSLCSLRLPTVLEYIQGPLRASLSDAHSYVRKTGVMGILKVYHMDPESVRGGDLVDVLYDMLRDGDGTVVANCIVVLNEIMLDEGGIAINTAIVHHLLGRLNDFNEWGLCSVLKLVAR 244
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 278 bits (710), Expect = 2.470e-85
Identity = 138/190 (72.63%), Postives = 161/190 (84.74%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLG+DVSRLFTEM++AIETRDLVVKKMVYLYLCTYA   PDLAIMC+NTLQRDC N+DPMVRGLALRSLCSLRLP++VEYIS+PL+ SL DAN+YVRKTGVM ILK+ HL P  V +G MVDTLY ML D DAQVV NC++ L+E+ A  GGM+ +R  +  LLGRL+ F+EWG+C +LALV R
Sbjct:   79 KVIAYMTLGVDVSRLFTEMIMAIETRDLVVKKMVYLYLCTYAHTNPDLAIMCVNTLQRDCGNEDPMVRGLALRSLCSLRLPSIVEYISEPLRRSLTDANAYVRKTGVMGILKLHHLAPAVVREGNMVDTLYAMLHDVDAQVVTNCLLALDEMAAAQGGMSLSRDTVLLLLGRLDGFSEWGLCKVLALVRR 268
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A7S2SSW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSW9_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.940e-85
Identity = 131/190 (68.95%), Postives = 163/190 (85.79%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLF+EM++ +ET+DLVVKKMVYLYL  YA++ PD+A+MCINTL RDCNN DPMVRGLALRSLCSLRLP++VEYI+DP++ SLVD N+YVR+TGVM ILK++HL P  V+   ++D +Y+MLQD D  VVANC++VLNE+M + GGMA N+AI+HHLL RL DFNEWG+  +L LV+R
Sbjct:   52 KVIAYMTLGIDVSRLFSEMVMCVETKDLVVKKMVYLYLVNYAQEHPDMALMCINTLHRDCNNDDPMVRGLALRSLCSLRLPSIVEYIADPIRKSLVDKNAYVRRTGVMGILKLFHLQPDMVKQSNLIDLIYDMLQDPDGGVVANCIMVLNEMMLEEGGMAVNQAIVHHLLERLNDFNEWGLHQVLELVTR 241
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)

HSP 1 Score: 266 bits (680), Expect = 4.970e-81
Identity = 133/191 (69.63%), Postives = 157/191 (82.20%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMA-DAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLFTEM+LAIETRDLVVKKMVYLYLC YA  KPDLA+MC+NTLQRDC+  DPMVRGLALR+LCSLRLP+M+EYIS PL+ +L D + YVRKTGVM ILK++HL P        VD LYNM+QD D  VV NC++VL E++A + GGMA N+ +I HLLGRL +FNEWG+  ILALV++
Sbjct:   62 KVIAYMTLGIDVSRLFTEMVLAIETRDLVVKKMVYLYLCNYAHAKPDLALMCVNTLQRDCSADDPMVRGLALRALCSLRLPSMLEYISAPLRRALTDQSPYVRKTGVMGILKLFHLAPDVARSANFVDLLYNMIQDPDPHVVTNCLIVLGEMLAAEEGGMAVNQPLILHLLGRLGEFNEWGLTQILALVAK 252
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.240e-80
Identity = 124/190 (65.26%), Postives = 159/190 (83.68%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLF+EM+LA  T+DLV+KKMVYLYLC YA+   +L ++ INTLQ+DC + DPM+RGLALRSLCSLRL +++EY+  PLK+SL D+++YVRKTG+M ILK++HL P  V++  +VDT+YNM++D D  VV NC+V LNEIMAD GG+A N+AIIHHLL R++DFNEWG C +L LV+R
Sbjct:   43 KVIAYMTLGIDVSRLFSEMVLASNTKDLVLKKMVYLYLCNYAQTNAELTLLVINTLQKDCRDDDPMIRGLALRSLCSLRLTSVIEYVMVPLKSSLTDSSAYVRKTGIMGILKVYHLAPARVKESDLVDTMYNMVRDRDTVVVTNCLVALNEIMADEGGIAINQAIIHHLLTRIKDFNEWGQCVVLGLVAR 232
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: M4C296_HYAAE (AP complex subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C296_HYAAE)

HSP 1 Score: 263 bits (671), Expect = 8.630e-80
Identity = 125/190 (65.79%), Postives = 161/190 (84.74%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLF+EM+L ++T+DL+ KKMVYLYL  YA++  +LAIMCINTL  DC N+DPMVRGLALRSLCSLRL +++EYI DPL+ASL D ++YVRKTGV+ ILK++ L P+ +++  M+DTLYNM++D D QVV+NC+V LNEIMAD GG+A N+ I+ HLLGR+ DFNEWG C+IL +V++
Sbjct:   70 KVIAYMTLGIDVSRLFSEMVLCVDTKDLISKKMVYLYLTNYAQKNSELAIMCINTLLNDCRNEDPMVRGLALRSLCSLRLDSILEYIHDPLQASLTDTSAYVRKTGVIGILKVYSLNPELIKESDMIDTLYNMIRDRDPQVVSNCLVALNEIMADEGGIAINQPIVMHLLGRITDFNEWGQCNILQIVAK 259
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: B8C1G4_THAPS (Beta subunit of clathrin adaptor complex AP2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1G4_THAPS)

HSP 1 Score: 262 bits (669), Expect = 1.960e-79
Identity = 130/190 (68.42%), Postives = 156/190 (82.11%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLFTEMMLAIETRDLV+KKMVYL+LC YA   PDLA MC NTL +DC N+DPMVRGLALRSLCSLRLP M+EY S+PL+ SL D ++YVRKTGVM ILKM+HL  +  +  A  D LY+ML+D D+ VV NC++VLNEIMAD+GGMA NRA++ HLL R+ +F+E+G+  +L LV R
Sbjct:   76 KVIAYMTLGIDVSRLFTEMMLAIETRDLVIKKMVYLFLCNYAETHPDLAQMCTNTLVKDCGNEDPMVRGLALRSLCSLRLPQMIEYTSEPLRRSLQDGHAYVRKTGVMGILKMYHLNKEEFDKAAFNDILYDMLRDPDSSVVTNCILVLNEIMADSGGMALNRAVMLHLLNRIHEFSEFGILSVLDLVPR 265
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A7S1YPK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YPK8_9STRA)

HSP 1 Score: 256 bits (655), Expect = 3.840e-79
Identity = 131/192 (68.23%), Postives = 158/192 (82.29%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADA--GGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLFTEMMLAIETRDLV+KKMVYL+LC YA   P+LA MC NTLQ+DC N+DPMVRGLALR+LCSLRLP MVEYIS+PL+ +L D ++YVRKTGVM ILK++HL     ++   VD LY+ML+D DAQVV+NC++VLNEIMA    GGMA NRAI+ HLL R+ +F+E+GV  ++ LV R
Sbjct:  238 KVIAYMTLGIDVSRLFTEMMLAIETRDLVIKKMVYLFLCNYATSHPELAQMCTNTLQKDCGNEDPMVRGLALRALCSLRLPQMVEYISEPLRRALSDHHAYVRKTGVMGILKLYHLDRDKFDECNFVDILYDMLRDPDAQVVSNCIIVLNEIMAQGPDGGMALNRAIMLHLLNRIHEFSEFGVVAVIDLVPR 429
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BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Match: A0A484E443_BRELC (AP complex subunit beta n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E443_BRELC)

HSP 1 Score: 261 bits (666), Expect = 4.670e-79
Identity = 124/190 (65.26%), Postives = 160/190 (84.21%), Query Frame = 1 
Query:    1 KVIAYMTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINTLQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKTGVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMADAGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR 570
            KVIAYMTLGIDVSRLF+EM+L ++T+DL+ KKMVYLYL  YA++  +LAIMCINTL  DC N+DPMVRGLALRSLCSLRL +++EYI DPL+ASL D ++YVRKTGV+ ILK++ L P+ +++  M+DTLYNM++D D QVV+NC+V LNEIMAD GG+A N+ I+ HLL R+ DFNEWG C+IL +V++
Sbjct:   69 KVIAYMTLGIDVSRLFSEMVLCVDTKDLISKKMVYLYLTNYAQKNSELAIMCINTLLNDCRNEDPMVRGLALRSLCSLRLDSILEYIHDPLQASLTDTSAYVRKTGVIGILKVYSLNPEIIKESDMIDTLYNMIRDRDPQVVSNCLVALNEIMADEGGIAINQPIVMHLLSRISDFNEWGQCNILEIVAK 258
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9539.17561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE6.080e-12297.89B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
F0Y5E8_AURAN9.330e-9373.68Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A835YU68_9STRA2.470e-8572.63Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A7S2SSW9_9STRA2.940e-8568.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CWN1_9STRA4.970e-8169.63B2-adapt-app_C domain-containing protein n=2 Tax=M... [more]
A0A7S1C8U9_9STRA1.240e-8065.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
M4C296_HYAAE8.630e-8065.79AP complex subunit beta n=1 Tax=Hyaloperonospora a... [more]
B8C1G4_THAPS1.960e-7968.42Beta subunit of clathrin adaptor complex AP2 n=1 T... [more]
A0A7S1YPK8_9STRA3.840e-7968.23Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A484E443_BRELC4.670e-7965.26AP complex subunit beta n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9539contigS-dermatodea_contig9539:1544..8455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue3.2e-98
Seed eggNOG ortholog2880.D8LNY8
Preferred nameAP4B1
KEGG koko:K12401
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9539.17561.1prot_S-dermatodea_contig9539.17561.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9539 1544..8440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.1889029-CDS-S-dermatodea_contig9539:1543..16931622925415.1889029-CDS-S-dermatodea_contig9539:1543..1693Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 1544..1693 -
1694079918.231776-CDS-S-dermatodea_contig9539:1543..16931694079918.231776-CDS-S-dermatodea_contig9539:1543..1693Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 1544..1693 -
1622925415.204113-CDS-S-dermatodea_contig9539:4844..50851622925415.204113-CDS-S-dermatodea_contig9539:4844..5085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 4845..5085 -
1694079918.243525-CDS-S-dermatodea_contig9539:4844..50851694079918.243525-CDS-S-dermatodea_contig9539:4844..5085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 4845..5085 -
1622925415.2202656-CDS-S-dermatodea_contig9539:8276..84401622925415.2202656-CDS-S-dermatodea_contig9539:8276..8440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 8277..8440 -
1694079918.2540255-CDS-S-dermatodea_contig9539:8276..84401694079918.2540255-CDS-S-dermatodea_contig9539:8276..8440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9539 8277..8440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.2320228-UTR-S-dermatodea_contig9539:8440..84551622925415.2320228-UTR-S-dermatodea_contig9539:8440..8455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9539 8441..8455 -
1694079918.2711136-UTR-S-dermatodea_contig9539:8440..84551694079918.2711136-UTR-S-dermatodea_contig9539:8440..8455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9539 8441..8455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9539.17561.1

>prot_S-dermatodea_contig9539.17561.1 ID=prot_S-dermatodea_contig9539.17561.1|Name=mRNA_S-dermatodea_contig9539.17561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=185bp
MTLGIDVSRLFTEMMLAIETRDLVVKKMVYLYLCTYARQKPDLAIMCINT
LQRDCNNQDPMVRGLALRSLCSLRLPAMVEYISDPLKASLVDANSYVRKT
GVMAILKMWHLWPQAVEDGAMVDTLYNMLQDNDAQVVANCVVVLNEIMAD
AGGMATNRAIIHHLLGRLEDFNEWGVCHILALVSR
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mRNA from alignment at S-dermatodea_contig9539:1544..8455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9539.17561.1 ID=mRNA_S-dermatodea_contig9539.17561.1|Name=mRNA_S-dermatodea_contig9539.17561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6912bp|location=Sequence derived from alignment at S-dermatodea_contig9539:1544..8455- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTTATCGCCTACATGACTCTAGGAATTGACGTGAGCCGGCTTTTCAC
GGAGATGATGCTGGCGATCGAGACGCGTGACTTGGTGGTGAAGAAGATGG
TGTACCTGTATCTGTGCACCTACGCCAGGCAGAAGCCGGACCTGGCGATC
ATGTGCATCAACACCTTGCAGCGAGATTGGTGAGGGTGGGACTTGCTGAC
TTGACCTGACTACAATTATTTATGCGCTTTTGCGTCAAAGAGACGCGGAA
GGGTTGCTTGCGCCCGCGCTGCTGTTATGTGTGTACATTTTGTCGCCACC
TGATGAAAAAACTGCTGCTGTGCCGCTGATGCTTTAGCGACCTGTCGCTA
TTTTGGTTGTTTTTGCTTTTTGGCCGACTCTAATGGGACACGAAACCCTA
AAACGGATTCTCCCGAAAATTCGTTTTTCGTGAAATGGCCAAAAGTTGCT
ATTAATAGTCGGGCCTATCTCTTGGCAAACGGTTTCGATTTCCGTATTTT
TCGACTGCGTGTGTTGGACAAGGTACTTGTACACACACCTGTATGTACAA
GTACATGCTTACACAGCAAATCGCAATCGAGGTTCAGTTGACTTCGCGGG
CAGCAGTGCCATCGAGGCGCTGTGTGGCGGCGGTATTGTGACTTGTGTGT
GTGGCGGTCTATGCTCTCAGTTCCTCCCCGGGCGCACCCCGGGCTGGTCA
AGGCTGGCCAAGAGATATGATCGACACTGTCGGCTCCACAGCAGTATAAC
AACAACAGCAGCAGCAGTAGTCTTACTCTCGAACCTGTAACTCTACAAGT
AATGCTAGAGCGATTGCGCTGCTGGGTAGGAATGCGGAGGCGAAGCAGAG
CGTTGAGCTTTGGACAAAACAATGTCGATCGCACAATCAATACTCTGCCT
CCAATCTACGCCTTGATGCCTGACCCCCACCTATTATAGCTTGCTGGCTT
CGTCCACGGCAGTGGGCTGGCTGCCAGTGAGTGCTCTCCTATTTACCAAT
GTTGCCTTGTCCTCGGACTACGACCGACAAATGTTTTCCTCCTCCACAAA
CAGCTAGGTCATACGGCTCCGCCAATTTTTTTTATAGCGATTTAGAGTTG
AGAGGTGAAACGTTCACAACTGAAGCCAAAAGTCATAGTGATTTCAGAGG
GGGCCATTACAAACGAGCGTTGAAAATAGTACGATTTTTTTGCCTCACGG
GCGTGTAGCCTAGCCGTGGCTTCCTACTCATGTCAGTAGAAAAACTATAA
TATCTTTATTCTGAATTAGTACGAGTAGCGCTTCGACTGTTTTTTAATAG
CGATTTTAGAGTTACCATGCCCACTATTTCCTACACGTTTTGCGTGACAA
AAACGATAGCGATTTTAGACAGGGCTCAGTTGATGCCAAACAACTTTATG
TTTGTGTTGAGCGCCAAGCTTGATTTTGGCGTTGAACAACCACGCACACC
TCACGGACGTGGCCGTGGCTACCTTCTATTAGTACAGCATTAATAGTATA
TATGGTTACAATACTTGCAAGGTGTTTATGCCGACGTTTAGAAGGAAACC
TTGGCGCCATTGAGCAGAAATTTGTTTCTGATTACTACTGTATAATAGCG
TACCTCCGTGTTACCTTGCATGCACGGTGCTTCTCGCTCTAGTGCACCCA
CCCATGACCGCAATATTAATACAGTAGCTATACATTCATTGTACACTACT
GTATTAATACTCTCACTAGTAGGTACAGTAGCCACGGCAACGCCCGTGAG
GTGTGCGTTGGCAGCGATACCACGGCAGCCGTTCACCCACGGAGGAAGCC
GAGCGTGCAAGCAGGGGCTAGCTGCTGCTGCTGTATGTGGGCAGTGGTGC
GTTTTGTGGGGTGTCTCCAGATGTCGAGCAGAGGGAGAGGCAAAGGAGTA
GGTGATGACAGAAGTAGGAAATAAACGCACGAAAAAACATAGCAAAATAT
GGTTTCAAGCTATACACCAATATATCATAACCTATCGATATGGGTGCTGC
TCCCGACAGACAGAGAGAGAGAGGTTGATTAGCACATGAGGAGGAGAGGC
AGCGCGTAGCTGGCTGCAGACCGGCGCGGGCGGTGGGCGGCTGTGTGTAT
GGCTGCGTGATGTCCTGTCTGGCAGCTCGCTGCTGCTTGTGTGGCTGCTG
CTTGTCTGCACGGGTGCGTTTTTTGTGCTGTCTCGAGAAGATGCTATGTA
CCGTATGTTGTTTGCGTTGGTGGCTGCTGCTCGTGCCGGCGCTGCTGGCT
GCTGCCTCTGACTGTGCTGCTGACTGTGGCTGCTGGCTGTGCCACTGACT
GTGCCTGCTGGCGCTGCTGACTGTGCTGCTGACTGTGGCTTCTGGCCGTG
GTGGTGGCGGCGGCGGCGGGCGAGCGCAAAGTCAAACATTTGGCGTTTGG
CATCAAAATCCTTATCTTAGTCGCTAAATAAAAATCGTACAGGAATATAT
AGGATTCGTTGGACACAATCCTTCTCTAAATCTTAATGAAAAAACTTACC
TTGTATTCATTAATAAGATTTACGGGGGGAACACAGCAGTAATCAGGACC
ACATTTATGCTCAATTCTTGTAGCGTTTTCAAGTAGCTATTACATTACAC
TACTCTTATTTACGGGGGGAACTGTGGATACGAGTGCCCAGGCGGATACC
AGGGTGCGTGGGACGAAGTCCCGGGGCGTGGTTTCTTTCTTTGGTCTTGG
TAGCGAGGGGACTAGACTAGACTAGACTATACTATAATAGCTGGGTTTGG
TTGGTCTTGTAGTCCGTGGGTGGACCAAGCCTTGATGCTCCGTTCTTGAT
CCTGGTCCTGTCGGTAGTTGATGCTCCTTCCGTTGGTAGTGGAAACCCGC
AGGATGGATGTGTACAATGGGGACATATATGGGTGTAAGAAATGTGCTCT
CCACAAGCAGTACCTCCCCCTTTATGCGTACATCGTTTTTTTTTTTTTTA
CTTTTCCCCGAACACCTTGCAAGAAATAACAAAATGTTGGGTTTTTGATT
TGACGTTTCAGGCCGGAAGATTACATTAACATTTGCAGATGCTGCAAGGC
CAGAGACCAGATCAACAATGAATAGCATGTTATGTTGGGTATAATATTAT
GGTTAATGTGTGGCAAAATTTTTTATCCTAATTACTATACTACTGGCTGC
GTACCTCGGTAAAATAGTGACGATATTTGGCGCAAAAACGACCTCGGTCC
CAAAAGGGTTAGACCAAGACACTATGTATGATACCGACGACTCCACCCTA
TTATCTCACACCGGCCAACCCCCGTCCACTGTGGACAAAAACACACGGCG
CGCTCTCTTCTCTCTCAAAATGAAGCACACCGCGCCCCACCTGTTCCCAA
CCCCCCCCTCCCCATTGCAGCAACAACCAGGACCCGATGGTCCGCGGCCT
GGCGCTGCGATCCCTGTGCTCCCTGAGGCTGCCGGCGATGGTGGAGTACA
TATCGGACCCCCTTAAGGCCAGCCTGGTGGACGCCAACTCGTATGTTCGA
AAAACGGGCGTGATGGCCATCCTCAAGATGTGGCACCTTTGGCCGCAGGC
CGTGGAGGACGGGGCTATGGTGGACACGCTGTACAATATGCTGCAGGACA
ACGACGCGCAGGTGGGGGGGGAGGGAGCACTATTATACAAGTGCGTGTAT
GGAATTTGTCCATGACAAAGGTGGAGATTGTTGTGTACTATTTATACTGT
GGAAGCGTGTAGCCCGTGGACTTTGACGGGTGTACAACAGTAGTGTACAT
CAGTGAAGTGTAATTGTACGTGGCTGTAGACACTGGTTTCAAAAATACGT
CTGTATTATTATGGGTGTAATACAATCAGTGAGGGTACCGGATTCAACAG
TACACGTGTAGGCTGTGTACCTGATTGTATACAATACCCCTGCCCCAAAT
AACATGTACACTTACACTACACTGCAATCTCCTCGTTTCGACCATTTTCA
CACATACATGTGATACAGATATGCATACATACATACATACATACATACAT
ACATACATACATACATACGTACATACATGAAAGAACTTACAAAATTCTTC
TTGGTGTTGTTCTGAGCTTAGGAATCTATCTTCCTCTTGGTCCACGCTGT
ACTTTGCTTGCTGTATTTGTGGGTCGTGGAATGTTGCGCACAGTAGAAAG
CAGTGTGACTAGGTTTCGGGAGGTAGGTGCGAAGCCGCTGAAGAGAGCAG
CGCCCTGCGGGTCGATGCGGGTACAGCTACTGCTAGCGCTGCTGTCCGGC
GGGCCTCTAATGCGTCGCCGGTGCCTCTAATGCGCCGCCGGCACAAGGAA
TTATCAATGCTATGATATACAGCTGTTGTTGTTGATGATACGAGATACTG
CACACGAAAAACAAAAAAAACTGCTGTACAGCAGTAGCTTCGAGAGAGTT
GAAGCAAACTTTCGGGATTCATTAGCATCGATGCCACAAGACTCCACGAA
GCACTACCGCGTGTGGGCACGCACTACAAGTACACGTCTAGACACGTTGC
CGTCGAAGAATGGTCTCCGCGATATCCCTGTATCGTCGAGTGGAGGTGTG
CTGTGTGCTGTGGTCGAGGCTATCATATGTATTTCGCGTGAATTTCCATT
ATTCTCGCGTGAATTAATCCCCGCGCGTGCGCGGACCGCGCGCAGTTGTT
TTCTTTCGCTGAATCTTTGAGATTTTATTTGAGTTTTCATTCCACATGAG
GTTTCTCACTGCATGCTGCTGTAAACTGCGTAGCTCGACTCCACCGCAGC
TGGCGAAGCGAAACTGGGTGCGTTGAACACATATCTCCTATAAATAGGTA
CAGTAGTACATAACGCAGCTCTTCCTGTGTGCTCCGTATCGTCAGTGTCT
ACTTTCAGGAAGATCTTTATGTTATCATTTTGAAACTGCATGTAAATTAT
ACAAGATCTAGCTCTCTCTCGCAAGCAGCTGCAGTTTTTTTGTCAAATCA
CAATTACAAGGTAACTTATATATAGCTAGTTAGAGTACTACCCCATGCGG
ATCGATGCGGGCACCGCTACTGCGAGGACTGGTGTCGATAATATATGCGC
TGAATAGTATAGTATATTTCCTACGTAGCGCAGCATACTCTGTGTGTTTC
GTGTCAGTCAGTACCCACGTTCAGGGAGATTCCTTACTTAATGCATGTGA
AATACAACAATTAATTGGATCTTTGTCTCCATGCAGCAGGTCGTTTGTAA
CATACCAGTACGTTACAGCAGGCCGTCGCAGCAGGGTATAGTATCGTCCG
TACAATTGTACATATATAGCAATATACACAAACAGAGGACGCCGTCGGTC
GCGGTCTAAACGTATCATGTGATATAATATGTGATCGCATCCGCAACGAA
ACCCGGCTTTGCTTTGTTTTGTTCGTGAACGTTCTCGGCTACTCAATCGA
TAGATTGAATGACATCCCACTTGCGTCACCCCGCGATAGCTTCAGGTAGC
CTGCTAATGATCAAGGACTACGTCCGAAGGGTTTCTTGTACATACACACA
TACATACATACATACATACATACATACATACATACATACATTCATACATT
CATGACGGACGGGGCCGGGGCGGAGGGTGCGAAGCTATGCTTGCCCTTCC
GGAACTGAGTCCATCGTCCGGGTCCGTCTTTCTCCTCTTATTTCACAACG
AACTTGACGGGCTTCTCCGTGCCGTGCCGTGTATCAAAGTGACGGTGGGA
AGATAAGTATACGTCCTGCCACACTTAGAATAGCTTGTAGTAGTAGTGCG
TGCACGAAGGGTGCCACTATTGCGCGTGCATTTGTAGCCCTCACCGCTTA
CTTGGGGAAAACGGACTCGTTCCTGAAAAGGTCTTTTGAAAAAGAGGGTA
ATAGTAGTTGCCCGGATTCGTGCGCCGCCGACGCGTTCGGCGTGTTGCGT
ACCGGTGTTGCCGCCCTATTGTTTTAGTGTTGTTCTCGAATGGGTCTCAA
TCCTAGGCAGGCGGTAACAATCTGCACCCCCAAACCGCGCACCGAGCGGC
GAGGGGGGGGATACACATTCTTGGCTGCTCACAAAGCACACAAAGACTCA
TTGCCAGGATATCGCTCAGGACAAAGAAATACACTTGTACCACAACCATA
CAACATATACTGTACACACGACATGAAACCATAGCATCATATCATAAGCA
ACAAGTGAGCCTCCAAAGGTGTAGCTTGGACCATCTTCCCTCTTGAAAAG
GTGGGACCACAAACGCTCGCTCTGTCTTTGGAATCACTTTGTTTTTGGGG
TGGGTTTCGGGTCGGGGTCGTTTCTCGCTCTCTGCTCTAACATTGTCTTT
TGTTTTCTTGTGCGTGCGTAGGTACATATGATGCAAGTCGGCATCGGAGC
TTTTACGCACAAATCAAGAAGGCAACGAACGACGCGCGTGTTTACCTCCT
TTTTCTAGCCCGTGATGCCACGGGGGCTGTTGATTCAGAATGGTTACTAG
CACCAGACAACGGGTTAGGTGGTCAATTACTGAGATAGCGTATCTTGAAC
CCTTCGATGATGATTTTAAATCCTGCTAAGTCCATAGCTACACGCTGAAA
CGGACGGCTGACGGGTCTATGTCCTACTGGCAGCTTAAGGGGGACGGTGG
GATGTTTTCCGATGTTGATATGACGATTTTTTTCTCTTCTCTCTCTTGCG
ATGGCAAAGCCTCTCTTTCCGCTGCTGCGCTTACCACTTTTTTCTCCTGC
TACTTCCTTCTCTCTGTCTATATATATATATATCTATATGCCTCTCTGCT
GGTCCAACCAAGGTGGTGGCCAACTGCGTGGTGGTGCTGAACGAGATCAT
GGCAGACGCCGGAGGGATGGCGACGAACCGGGCTATCATCCACCACCTCC
TGGGACGGCTGGAGGACTTTAACGAGTGGGGTGTGTGCCACATCCTCGCC
TTGGTTTCGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9539:1544..8455-

>mRNA_S-dermatodea_contig9539.17561.1 ID=mRNA_S-dermatodea_contig9539.17561.1|Name=mRNA_S-dermatodea_contig9539.17561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at S-dermatodea_contig9539:1544..8455- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACTCTAGGAATTGACGTGAGCCGGCTTTTCACGGAGATGATGCTGGC
GATCGAGACGCGTGACTTGGTGGTGAAGAAGATGGTGTACCTGTATCTGT
GCACCTACGCCAGGCAGAAGCCGGACCTGGCGATCATGTGCATCAACACC
TTGCAGCGAGATTGATGACTCTAGGAATTGACGTGAGCCGGCTTTTCACG
GAGATGATGCTGGCGATCGAGACGCGTGACTTGGTGGTGAAGAAGATGGT
GTACCTGTATCTGTGCACCTACGCCAGGCAGAAGCCGGACCTGGCGATCA
TGTGCATCAACACCTTGCAGCGAGATTGCAACAACCAGGACCCGATGGTC
CGCGGCCTGGCGCTGCGATCCCTGTGCTCCCTGAGGCTGCCGGCGATGGT
GGAGTACATATCGGACCCCCTTAAGGCCAGCCTGGTGGACGCCAACTCGT
ATGTTCGAAAAACGGGCGTGATGGCCATCCTCAAGATGTGGCACCTTTGG
CCGCAGGCCGTGGAGGACGGGGCTATGGTGGACACGCTGTACAATATGCT
GCAGGACAACGACGCGCAGCAACAACCAGGACCCGATGGTCCGCGGCCTG
GCGCTGCGATCCCTGTGCTCCCTGAGGCTGCCGGCGATGGTGGAGTACAT
ATCGGACCCCCTTAAGGCCAGCCTGGTGGACGCCAACTCGTATGTTCGAA
AAACGGGCGTGATGGCCATCCTCAAGATGTGGCACCTTTGGCCGCAGGCC
GTGGAGGACGGGGCTATGGTGGACACGCTGTACAATATGCTGCAGGACAA
CGACGCGCAGGTGGTGGCCAACTGCGTGGTGGTGCTGAACGAGATCATGG
CAGACGCCGGAGGGATGGCGACGAACCGGGCTATCATCCACCACCTCCTG
GGACGGCTGGAGGACTTTAACGAGTGGGGTGTGTGCCACATCCTCGCCTT
GGTTTCGAGGGTGGTGGCCAACTGCGTGGTGGTGCTGAACGAGATCATGG
CAGACGCCGGAGGGATGGCGACGAACCGGGCTATCATCCACCACCTCCTG
GGACGGCTGGAGGACTTTAACGAGTGGGGTGTGTGCCACATCCTCGCCTT
GGTTTCGAGG
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