mRNA_S-dermatodea_contig95376.17560.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95376.17560.1
Unique NamemRNA_S-dermatodea_contig95376.17560.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A7S6UA12_9STRA (Ribosomal protein S19 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA12_9STRA)

HSP 1 Score: 168 bits (426), Expect = 6.440e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK
Sbjct:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 85
[Close]
BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: E6ZER8_ECTSI (Ribosomal protein S19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.940e-22
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRS WK+P I  + LK + R   E +KKP  T SR STIYPAA+GL + IHNG  M+ RKI  EMVGHKLGEF  TRK +I KK
Sbjct:    1 MSRSSWKTPFIDKSLLKRLTR---ELEKKP--TWSRRSTIYPAAVGLKIHIHNGKDMIARKIKPEMVGHKLGEFVATRKPFIPKK 80
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: Q94Z05_PYLLI (Ribosomal protein S19 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z05_PYLLI)

HSP 1 Score: 88.6 bits (218), Expect = 2.930e-21
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKY 243
            MSRS WK+P I  + LK   R K +++KKP  T SR STIYPAA+GL + IHNG  MV RKI  EMVGHKLGEF  TRK +
Sbjct:    1 MSRSNWKTPFIDKSLLK---RLKPDHEKKP--TWSRRSTIYPAAVGLKLPIHNGKNMVTRKIKSEMVGHKLGEFVTTRKTF 76
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A516ICL0_9PHAE (Ribosomal protein S19 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICL0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.150e-21
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRS WK+P I  + LK +      +++K K+T SR STIYPAA+GL ++IHNG  M+ R I  EMVG+KLGEF  TRK +I KK
Sbjct:    1 MSRSNWKTPFIDKSLLKQLT-----SQQKKKLTWSRRSTIYPAAVGLKLQIHNGKNMIARNIKPEMVGYKLGEFVTTRKNFIAKK 80
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: Q2TUF6_9PHAE (Ribosomal protein S19 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.380e-21
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRS WK+P I  + LK   R   E+ KKP  T SR STIYPA +GL ++IHNG  MV RKI  EMVGHKLGEF  TRK ++ KK
Sbjct:    1 MSRSNWKTPFIDKSLLK---RLNPEHDKKP--TWSRRSTIYPAVVGLKLRIHNGRDMVDRKIKPEMVGHKLGEFVPTRKTFVPKK 80
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A8F0FDL3_9PHAE (Ribosomal protein S19 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDL3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.610e-21
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            M+RS WK+P +  +FLK   R   ++++KP  T SR STIYPAA+GL + IHNG  M+ RKI  EMVGHKLGEF  TRK +I KK
Sbjct:    1 MARSNWKTPFVDKSFLK---RLTPQHERKP--TWSRRSTIYPAAVGLKLLIHNGKEMISRKIKPEMVGHKLGEFVPTRKTFIPKK 80
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A356L7S4_9PROT (30S ribosomal protein S19 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A356L7S4_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 9.880e-21
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTR 234
            MSRSVWK P +HP+ LK    A  ++ +KP  T SR STI P  +GL  ++HNGN+ +   I E+M+GHKLGEFA TR
Sbjct:    1 MSRSVWKGPYVHPSVLKKTAAANEKDDRKPIKTWSRGSTIVPPMVGLTFEVHNGNKFIPVSIVEDMIGHKLGEFAPTR 78
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BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A8F0FCH2_9PHAE (Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCH2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.780e-20
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRS WK+P I  + LK   R    ++KKP  T SR STIYPAA+GL + I+NG  M+ RKI  EMVGHKLGEF +TRK +I KK
Sbjct:    1 MSRSSWKTPFIDKSLLK---RLHPMHEKKP--TWSRRSTIYPAAVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVMTRKTFIPKK 80
[Close]
BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: Q2TUJ8_FUCVE (Ribosomal protein S19 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ8_FUCVE)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-20
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK 255
            MSRS WK+P I  + LK++      + KK K   SR STIYPAA+GL + IHNG  M+ RKI  EMVGHKLGEF  TRK +I KK
Sbjct:    1 MSRSKWKTPFIEKSLLKNL------SIKKTKPIWSRRSTIYPAAVGLKLTIHNGKDMLTRKIKPEMVGHKLGEFVTTRKNFIPKK 79
[Close]
BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Match: A0A068LMD9_9PHAE (Ribosomal protein S19 n=2 Tax=Sargassum horneri TaxID=74089 RepID=A0A068LMD9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.230e-20
Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVKIHNGNRMVFRKITEEMVGHKLGEFALTRK 237
            MSRS WK+P I  + L S  +     KKK KIT SR STIYP  +GL + IHNG  M+ RKI  EMVGHKLGEFA TRK
Sbjct:    1 MSRSNWKTPFIDKSLLTSFSK-----KKKRKITWSRRSTIYPVCVGLKLSIHNGKDMINRKIKPEMVGHKLGEFAPTRK 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95376.17560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA12_9STRA6.440e-53100.00Ribosomal protein S19 n=1 Tax=Schizocladia ischien... [more]
E6ZER8_ECTSI4.940e-2260.00Ribosomal protein S19 n=2 Tax=Ectocarpus siliculos... [more]
Q94Z05_PYLLI2.930e-2160.49Ribosomal protein S19 n=1 Tax=Pylaiella littoralis... [more]
A0A516ICL0_9PHAE5.150e-2154.12Ribosomal protein S19 n=3 Tax=Lessonia TaxID=10541... [more]
Q2TUF6_9PHAE8.380e-2158.82Ribosomal protein S19 n=2 Tax=Desmarestia TaxID=31... [more]
A0A8F0FDL3_9PHAE8.610e-2156.47Ribosomal protein S19 n=1 Tax=Analipus japonicus T... [more]
A0A356L7S4_9PROT9.880e-2152.5630S ribosomal protein S19 n=1 Tax=Alphaproteobacte... [more]
A0A8F0FCH2_9PHAE1.780e-2057.65Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxI... [more]
Q2TUJ8_FUCVE2.890e-2056.47Ribosomal protein S19 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A068LMD9_9PHAE5.230e-2059.49Ribosomal protein S19 n=2 Tax=Sargassum horneri Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95376contigS-dermatodea_contig95376:280..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog1002672.SAR11G3_01220
Preferred namerpsS
KEGG koko:K02965
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
EggNOG OGs1RGYX@1224,2U95S@28211,4BQI8@82117,COG0185@1,COG0185@2
COG Functional cat.J
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.1227152-CDS-S-dermatodea_contig95376:279..5341622925415.1227152-CDS-S-dermatodea_contig95376:279..534Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95376 280..534 +
1694079918.2185462-CDS-S-dermatodea_contig95376:279..5341694079918.2185462-CDS-S-dermatodea_contig95376:279..534Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95376 280..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95376.17560.1prot_S-dermatodea_contig95376.17560.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95376 280..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95376.17560.1

>prot_S-dermatodea_contig95376.17560.1 ID=prot_S-dermatodea_contig95376.17560.1|Name=mRNA_S-dermatodea_contig95376.17560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MSRSVWKSPSIHPNFLKSIVRAKAENKKKPKITLSRASTIYPAAIGLLVK
IHNGNRMVFRKITEEMVGHKLGEFALTRKKYIYKK
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mRNA from alignment at S-dermatodea_contig95376:280..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95376.17560.1 ID=mRNA_S-dermatodea_contig95376.17560.1|Name=mRNA_S-dermatodea_contig95376.17560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig95376:280..534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCGCTCTGTCTGGAAATCCCCTTCTATTCACCCCAATTTTTTAAA
AAGTATAGTTAGAGCCAAAGCAGAAAACAAAAAAAAGCCAAAAATCACCT
TGTCCCGAGCTTCCACTATATATCCGGCAGCTATTGGACTTTTAGTGAAA
ATACATAATGGAAACCGTATGGTTTTTCGTAAAATTACTGAAGAAATGGT
AGGACATAAATTAGGAGAATTCGCTTTGACACGAAAAAAGTATATCTACA
AAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig95376:280..534+

>mRNA_S-dermatodea_contig95376.17560.1 ID=mRNA_S-dermatodea_contig95376.17560.1|Name=mRNA_S-dermatodea_contig95376.17560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig95376:280..534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCGCTCTGTCTGGAAATCCCCTTCTATTCACCCCAATTTTTTAAA
AAGTATAGTTAGAGCCAAAGCAGAAAACAAAAAAAAGCCAAAAATCACCT
TGTCCCGAGCTTCCACTATATATCCGGCAGCTATTGGACTTTTAGTGAAA
ATACATAATGGAAACCGTATGGTTTTTCGTAAAATTACTGAAGAAATGGT
AGGACATAAATTAGGAGAATTCGCTTTGACACGAAAAAAGTATATCTACA
AAAAAATGTCCCGCTCTGTCTGGAAATCCCCTTCTATTCACCCCAATTTT
TTAAAAAGTATAGTTAGAGCCAAAGCAGAAAACAAAAAAAAGCCAAAAAT
CACCTTGTCCCGAGCTTCCACTATATATCCGGCAGCTATTGGACTTTTAG
TGAAAATACATAATGGAAACCGTATGGTTTTTCGTAAAATTACTGAAGAA
ATGGTAGGACATAAATTAGGAGAATTCGCTTTGACACGAAAAAAGTATAT
CTACAAAAAA
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