mRNA_S-dermatodea_contig953.17553.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig953.17553.1
Unique NamemRNA_S-dermatodea_contig953.17553.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig953.17553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig953contigS-dermatodea_contig953:5724..11337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_003520.1
Exons4
Model size559
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig953.17553.1prot_S-dermatodea_contig953.17553.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig953 5724..11246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.4615328-CDS-S-dermatodea_contig953:5723..58671622925414.4615328-CDS-S-dermatodea_contig953:5723..5867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 5724..5867 -
1694079917.7478771-CDS-S-dermatodea_contig953:5723..58671694079917.7478771-CDS-S-dermatodea_contig953:5723..5867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 5724..5867 -
1622925414.4726164-CDS-S-dermatodea_contig953:6117..63181622925414.4726164-CDS-S-dermatodea_contig953:6117..6318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 6118..6318 -
1694079917.7567925-CDS-S-dermatodea_contig953:6117..63181694079917.7567925-CDS-S-dermatodea_contig953:6117..6318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 6118..6318 -
1622925414.484439-CDS-S-dermatodea_contig953:8003..80531622925414.484439-CDS-S-dermatodea_contig953:8003..8053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 8004..8053 -
1694079917.7650342-CDS-S-dermatodea_contig953:8003..80531694079917.7650342-CDS-S-dermatodea_contig953:8003..8053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 8004..8053 -
1622925414.4979203-CDS-S-dermatodea_contig953:11173..112461622925414.4979203-CDS-S-dermatodea_contig953:11173..11246Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 11174..11246 -
1694079917.7735956-CDS-S-dermatodea_contig953:11173..112461694079917.7735956-CDS-S-dermatodea_contig953:11173..11246Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig953 11174..11246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.5142198-UTR-S-dermatodea_contig953:11246..113371622925414.5142198-UTR-S-dermatodea_contig953:11246..11337Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig953 11247..11337 -
1694079917.7825594-UTR-S-dermatodea_contig953:11246..113371694079917.7825594-UTR-S-dermatodea_contig953:11246..11337Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig953 11247..11337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig953.17553.1

>prot_S-dermatodea_contig953.17553.1 ID=prot_S-dermatodea_contig953.17553.1|Name=mRNA_S-dermatodea_contig953.17553.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
MTRASVMIVAATLLASATSILGVSGQRLRGQAPRRRAQSSGAFCYSIGCP
NHMVPINDAWIAACPESGCTISACCQAFCSGYSCGNNLSPIRNAHTTRCT
SVGSEGEEVCTADQCCEALCSGYGCPNNYSPIQDAHLAVCDDLKCTADQC
CVDNSG
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mRNA from alignment at S-dermatodea_contig953:5724..11337-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig953.17553.1 ID=mRNA_S-dermatodea_contig953.17553.1|Name=mRNA_S-dermatodea_contig953.17553.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5614bp|location=Sequence derived from alignment at S-dermatodea_contig953:5724..11337- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCACAGCTCTGCTTTCCAGCTAGCTCGCACCAGCTACTGCTTTCCCAG
TGCACACGAGAGCAAGAGTAGCAGCCAACAACATCATCACGATGACGCGC
GCATCGGTGATGATCGTCGCCGCCACCCTCCTGGCCTCTGCTACTTCCAT
CCTCGGCGTCTCTGGTGAGTAGAGATTGTCCTCAACGGCGTGGTGTGCAG
CCTGCTGCAGTGCTGCTGTGACTTTGGAAAGATGTGACCGCATTTTGTCG
TGCATCTCACATATTGACCTCTGTGCCTGGAGGCAGTCTTGGCCGTTGTG
GCAGTCCTGCGATGATCGCGCTGGCGAGCGTACGGCTGTAGCCGGCCCCG
GTGGTGTTGTTGTTGCCTAGGTCGGTGGTTTGGCTCGCGATCACAGCGTA
GTTGGTCAATACGTGGAATCAGGCAAAACAAAACGCTGTCGTCACGTATG
TCAAGATTCTCGACTGGCCTCTACCGTCCAAAATATTTGAGAAATTCATT
CTGTATACAAGTATATTTAGTGCTGCCCCCAAGTTTTGCGTCGGTTGCTT
GGATGCGTGCGTCCTTGGCTGCTGCTGCTGTTGCTGTGTCTCCTCCTTAG
GCTAGGCGCAAGGAGGCGCGCGGTTCTCCTGTGTGCCTTGCCTGCAGCTA
GCGTGTTCCTCGCTTGCTCGCAGGCGATCGAACTCGCGCTGCTCGCTTCC
CACACAGCTCGGGTCTTTGGTCTTGGCATCTCACCATTTTTTAACGGTCC
AATTGACAGAAAAAACAGCACGATCTACAGCAGCAGCAGCAGTATGACAT
CTCTGTTGAGAGGTCTGCGGGAAACCAAGCAATCAACACAAACAACGCCA
AAAACACCTCGATGGTGATCTCCGCGTCCAAGCGTGTACCATACAAGTAG
ATGGATATTTGTCATGAGTATTCATGGCAAGAGCGCGGAGAGAAGCTACC
CGGTCGTTCCAGCAGTTGTAGACAAGACACGCCGTTGCAAAAGCCACACT
GCTAGGGATTTTACCCCCTCCCCCCCCCCGCTTCGCCCGGTTGAGGGGGC
GCCTCGGAGTGCTCAAAGACGGTTAGATACAATACATGTGTCGTGACCTT
TTGGCTCAACACGAACTTTTCGTGTTACGTTATTGTATAATCCCCAGTAC
CGTTGGCAGGCACTAGGGCCTGAGAGCGAGCACAAGCTCTTGACGTTTAT
ACAAAAAATCACCCCCGGCTGCGCGTGCCTGCCCTGCTTTCGCGTACCTG
AACCCGCCAACGGAGAGCCGAAGGCCATCTCTCTGGTCGTGTTGATATAG
TCACACCACCTGCGCGCATAGGAAGTCCTCTCCTCTCAACATCAGTGACG
CCGCACGCGAGAGGCTGGCAATTGCTCACAACCTGTCTGTTTACACGACT
TGTCACAGGCAGTCGCGTATCTCATTTTGTTTTCATTTTTTTATTATTTT
ATTATTTTACAGTCAGTATTATAGGCAGAATAGTAGAATAGCGTATGCAT
TATTGTATCAGTGGATCATCGTGGTGCTGCTGCTGCAGCTCTTTGTGCTC
CTTGTATCAGGACGTGTGTTTGTTTAGGTCGTTTACCATGCTAGTGCTCT
GCTCGGCTGGGCTTCTTTCTCTGGGCTGCAGCCGTTTCATATTATAGTGT
TTCCAAACACACTTACTTTATAGTTGCACATGTACGATACATGTAATACG
GATATGCACTGTTTTTTTGCGTAATAATCATACGCGGATCATCCCAGGCT
GGCCCAGGCAGCAGGGAACATGTGTTGTGCACGAATATTATATTTTGAAT
ATTTCAGTATTTCGAATTATATATTGTTTTGTTGGATGGTGATATTTAGA
GCTCTATACCTGGCCGGATCAATCATATTATAGCATAACGTGACACTCAA
CATACACACTTTGAACGTATTTAAGAGCTGTGTATGTAATTTTTATGTGC
TACTAATAGTTACTGTAATAGCATTTACACCGCCGCAAGTCCTTGACTGA
ATCGTATCATAACGTGACAAAACATTTATCAGTTTTTTACTTAATACGAA
ACATACACAGCCGTCTCCACAACCATATAATATATTTTTCATGCCACATG
TATTACAAGTATACAGTATATTGTGAAACTGAAAGCATTAATACGGCAAA
TACGCACCCCAGGATGTATTTTAATACATGCGATGTTCTGCGTACCACTA
TCGGCCCCGCCCGGCCGGCCGCGTGTGCGTGATATGTATGAAGATAGCAC
GAGCGTCTAAATCGAAAAATCCTTTTGTTCCCCACGCACCACTCCCCCTG
GTGCCATGTGTCGCGGATTAGTTTTTTCAATCTCACACCCCTCCATAGAC
TACAACTTTATTCTATTATATGATTACCCTTACCCTGAAACCAACTGCTG
TACTATCATACAAATAACTGTACCGATACGCCCTCATTATCCCCTGTGTT
ATTTCACGAACACTTCCCGTCATGCCACGATTAGTATAATACTGCAATAC
TATATTATTACATCATTCATGTACTGTACCGCTTTGCCCAGTCCCGCCAT
GCTATTATAGGAAACCGAGCAAGCTACAACTATCCCAGGAGATGTGATAT
CTGCGAGAAATTCTTTTTTTCAAGTATAGTTTGTGACCGCCGTTTTATGC
ACATGGATTCGATTCGAGTTCGGACGGGGTCTCTCGCCTCTCCCCCCGCT
CGGGCACGAAGATATATCATATTTCATACTGTACTATAAGTAATACTATT
ATACTGTTCTGATGCTGTACATGCCCGAAATATACAAAGATGAAATTTGA
GAGCTATTTCTCGTTTATTTTTTCTTGTACTCTGCGCTGGAGCTCTCTAG
AAGGACCAGCGGGTAAAACCACATACTACCATAATATAATACGTGCACTA
CATTTGTCAGTTTTAGTATGTATATCTATCTACGATCGTAAGCTACCTAC
CTGTTGTTCTGTTTTGAGATATCGTCTTGGTAAAAGATTTATTTCAATTC
CCTTCACAAGACGAGGCAGAGTACAACTACTGCTGCTGTGAATTTAATCC
ATCTATATCTATCATCATATAACAGATCAAAGCACGACGTCCCTGTAACA
AGCCTGCTACAGCCCTATCAATAGGACACTAAAACGTGGTGCTGATAACG
AATTTCCGTTTCCGTCCCGCCGGCTAACGAGCCCTCTGGCCCTGTACATC
CTGTAATAATACATATCTAATCCATACGCATTTTCATTTCTGCATTGCGT
TTTGTTTTGTGGTTCTGTTCTAACCATACGGCAGGTCAGCGCCTCCGCGG
GCAAGCACCACGGAGAAGAGCGCAGAGCAGTGGGGTGAGACGTCTACAGC
ATCTGGTGCCTTCTGCCCGCCAATTTTGCACCTGGCAGCGTTTTGCACAT
GCACGCTCCGGGATGACGATTGAAGTGATGGCTTGATGATTGTCGCGGTA
ACTTGTGATTAATAAAAGCCGTGCCGTGGACTTTAATTTTTGTAACACAA
CGGGCGCACTTTTACGTGGTAAAACATAGAGCTCTATGCCATAATTCGGG
CAGCTTTTCTGTCCGGGTTTTGCCTATAATACCATAATATCATGATTGTC
AATACTGTAGTGCTAGTACAGGCTTGTACGTACAAACTACACGTAGTGCA
TGTATAGTTCCATGTATAGTTCCCAAGTGGGTGGATATCAAACGTTGCCG
AGTCGCTTTTATGTCAAATATTTGGCAAAGACGAACGCTCGCGTTGGTGG
TATACACCTTGGACGCTTTCAGCACTACCCTTCGTTTATTTTCTGCCTTT
TCCCCCGTCTTCGACATTGAGAACCCTGCGAAGAACCAGTCGTTCGGGGC
ATCTATGAAACATGTGTTCCTGTGGTCAGATACGCAAAACAGTCCAGCAG
AAAAATATCTCATGCACATGAGTGTCTCTTCGCTGAACTTTCGTAATTTT
GTAATTTTGGTCGAGTGATTTTTGGTCGTGTCTTATGCCTTTTTGTCCAA
TTTGCTGTGTAACTTTTTGGTCGTGCGTGCCTTTTCATCCGGTTTTGCTG
TTAGCTTGTCGTGTCTTATGCCTTTTTGTCCAATTTTGCCATGTAGTTTT
TTGGTCGTGCGTGCCTTTTCATCCGGTGTTGCTGTTAGGTTGGTCTATTG
CCTCTTAATTCATTAATAGGCCGTTTTTTTCTCATATCGAGCTCGCAATG
CGGGTGTTGTTTTTCTGTACCCTCGCACGGCTATCATAGCGGTAGACGAT
TTGTCACAACTACGGGTGCGATAGGCGGGCAGGGATACGTGTCCGCTGGC
CCTTCCCCCTCTCGTGATTCGGTATTCGTCGAGATCTTGTTGGAGAGCGA
GATCCGTCTCTGTATATGGTTTTTTTCTCATGGCAAAGTTTCAGTGTCCA
TTTCAGAATGGCTTCGACACTAATGTAATTACCCGGATTTCAGCGGAAGG
GTGAAATGGTGTACAGTGTGTGTGATCATATACATGGGAGCTCTAGCCCT
AAGCTCTCAATTTTTTTTCATATCGGATATTTTGTCTTGATTCTACAGTT
GGAGACACGTTGGCCTTTCTGGGTACGAATGGCCGCCGCCGCCGCCGCCG
CCGGGTTGATTGTTGAACTCGTATCTATCCGCAGAGGGTTGCAGAGTTTT
TGAACCATCACCCATTGGCGAACGGCGAGATGTTTCCGGGTGAAATGCTT
GGCGTGGAATTCGTGTCGAAGACGCATAAGTTGGTAAGCGAATGCTTTCT
CGTACCCAGCTCGTTCCTGACTCACGCTCCGCGGTACCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCTCCCTCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCACGCCCAACCCATGACAGACCCTACGCCCCCCCCCCCC
AGCACCCCCACCCACNNNNNNNNNNAAAAGTTGTTAACCTATTTTTTTCT
CTTCCCCCCCCCTTTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCTCTTTTCAGGCGTTTTGCTACTCCATCGGCTGCCCGAACC
ATATGGTACCGATCAATGATGCATGGATAGCTGCCTGCCCCGAGTCTGGC
TGCACCATCTCGGCGTGCTGCCAGGCGTTCTGCTCTGGGTACTCCTGCGG
GAACAACTTGTCCCCCATCCGCAACGCGCACACGACCAGATGCACCTCCG
TCGGAAGCGAGGGAGAAGAGGCAAGTCGATTTCGGTTGAGTCGGCGGCTG
GAACGGCACTCTCATGAATGCTCTTGCCGCCCCGCCCAAAATCAGTATTC
TACAAGTATATTGTACAAGTAGAATGTAGCTCATCAACACACTCCCTTTC
TTGCCCACGTGGTGGGTAGATGCTCTCTTTTCACGCCCCTGGCCCCCTTT
TCCCTCTTCCCCTCCCCTCCCCTCCCCTCCCCTCCGCGTGTGGCGACACT
AACTCTGATTTCCTCCTCAGGTTTGCACCGCAGACCAGTGCTGCGAAGCG
CTCTGCTCGGGGTACGGCTGCCCGAACAACTACAGCCCTATTCAAGACGC
CCACTTGGCGGTGTGCGACGACCTTAAGTGCACCGCGGACCAATGCTGCG
TGGACAACTCGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig953:5724..11337-

>mRNA_S-dermatodea_contig953.17553.1 ID=mRNA_S-dermatodea_contig953.17553.1|Name=mRNA_S-dermatodea_contig953.17553.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig953:5724..11337- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGCGCGCATCGGTGATGATCGTCGCCGCCACCCTCCTGGCCTCTGC
TACTTCCATCCTCGGCGTCTCTGATGACGCGCGCATCGGTGATGATCGTC
GCCGCCACCCTCCTGGCCTCTGCTACTTCCATCCTCGGCGTCTCTGGTCA
GCGCCTCCGCGGGCAAGCACCACGGAGAAGAGCGCAGAGCAGTGGGGTCA
GCGCCTCCGCGGGCAAGCACCACGGAGAAGAGCGCAGAGCAGTGGGGCGT
TTTGCTACTCCATCGGCTGCCCGAACCATATGGTACCGATCAATGATGCA
TGGATAGCTGCCTGCCCCGAGTCTGGCTGCACCATCTCGGCGTGCTGCCA
GGCGTTCTGCTCTGGGTACTCCTGCGGGAACAACTTGTCCCCCATCCGCA
ACGCGCACACGACCAGATGCACCTCCGTCGGAAGCGAGGGAGAAGAGGCG
TTTTGCTACTCCATCGGCTGCCCGAACCATATGGTACCGATCAATGATGC
ATGGATAGCTGCCTGCCCCGAGTCTGGCTGCACCATCTCGGCGTGCTGCC
AGGCGTTCTGCTCTGGGTACTCCTGCGGGAACAACTTGTCCCCCATCCGC
AACGCGCACACGACCAGATGCACCTCCGTCGGAAGCGAGGGAGAAGAGGT
TTGCACCGCAGACCAGTGCTGCGAAGCGCTCTGCTCGGGGTACGGCTGCC
CGAACAACTACAGCCCTATTCAAGACGCCCACTTGGCGGTGTGCGACGAC
CTTAAGTGCACCGCGGACCAATGCTGCGTGGACAACTCGGGAGTTTGCAC
CGCAGACCAGTGCTGCGAAGCGCTCTGCTCGGGGTACGGCTGCCCGAACA
ACTACAGCCCTATTCAAGACGCCCACTTGGCGGTGTGCGACGACCTTAAG
TGCACCGCGGACCAATGCTGCGTGGACAACTCGGGA
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