mRNA_S-dermatodea_contig9527.17550.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9527.17550.1
Unique NamemRNA_S-dermatodea_contig9527.17550.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9527.17550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9527contigS-dermatodea_contig9527:1692..3885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9527.17550.1prot_S-dermatodea_contig9527.17550.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9527 1693..3885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.3411994-UTR-S-dermatodea_contig9527:1691..16921622925414.3411994-UTR-S-dermatodea_contig9527:1691..1692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9527 1692..1692 +
1694079917.668621-UTR-S-dermatodea_contig9527:1691..16921694079917.668621-UTR-S-dermatodea_contig9527:1691..1692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9527 1692..1692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.3586159-CDS-S-dermatodea_contig9527:1692..18241622925414.3586159-CDS-S-dermatodea_contig9527:1692..1824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9527 1693..1824 +
1694079917.6797137-CDS-S-dermatodea_contig9527:1692..18241694079917.6797137-CDS-S-dermatodea_contig9527:1692..1824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9527 1693..1824 +
1622925414.369695-CDS-S-dermatodea_contig9527:3729..38851622925414.369695-CDS-S-dermatodea_contig9527:3729..3885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9527 3730..3885 +
1694079917.690964-CDS-S-dermatodea_contig9527:3729..38851694079917.690964-CDS-S-dermatodea_contig9527:3729..3885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9527 3730..3885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9527.17550.1

>prot_S-dermatodea_contig9527.17550.1 ID=prot_S-dermatodea_contig9527.17550.1|Name=mRNA_S-dermatodea_contig9527.17550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MDSCPVCYATFSCGNSEPETVARQLPCEHVACTQCLEDCWEEEVAKEESG
VRCPECFELFAFESVQSVPQLQAAGEGGQDAGQNGLRSEALQETG*
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mRNA from alignment at S-dermatodea_contig9527:1692..3885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9527.17550.1 ID=mRNA_S-dermatodea_contig9527.17550.1|Name=mRNA_S-dermatodea_contig9527.17550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2194bp|location=Sequence derived from alignment at S-dermatodea_contig9527:1692..3885+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGGATAGCTGCCCCGTGTGCTACGCCACATTTTCCTGTGGCAATAGCG
AGCCTGAGACTGTCGCGCGACAGCTTCCGTGCGAGCACGTCGCGTGCACT
CAGTGTCTAGAGGATTGCTGGGAAGAAGAAGTGGTGAGACCATGAGAGAG
ACTATGAGAGAGACCTTGTATGGGAGAGACTCCAAACATCATCACATTCG
TTGTCATAACATGCGAGACCTAGCTAGGCTTTCGGAATTGTCGGCGGTAC
CACGCCTGTGTACTTCACTCTGCTGCTGCTAGTTCATGCTTGGAGTCTGC
CCGAGGTGTCACGATCCTTGTCTCCCCTTTGCCTGGCAAGGTCGCCGTGT
CAGTATCAAGGTACACAAGTCAGTGATTGTGTTACTTACTTGAAGTAAGT
AGTGAAGTAGTGTTAGTGTGGCCATGTATTGTACATTGTATACCATATGA
TGACTTGCGCTAGGTTGGGCACAATGAGGTGGAGATAGAGAATGAAGCGT
TGGAAGGACCACTCGAATCGTGATCACATGACGACACGACGACTGCTCTG
CTGCATCTCAGTCATGCTTCCCCACGCGGTTCGCTAATGCATGGCGTGTG
TCGGGCAATCCCTCCGCCGGAGGCATCCTGGTCGGACTAAAAAAAAAACT
AGTTCGACGATGGTACCAAATGATGCGTAATCGCTCAACTTTCAAAATTA
CGCTTGCCGACGACGCTGGCTGTCATACTCTTCTCTCTGTACTATGATAT
TAACAGTACTACTCTACAGCAGTGCTCTGCAGTATGCATTTCTTGTTCAA
GCACTCAGCACGACTCTGGCTGTCAATATGATACAAGTACTCTACTGGCT
GACTCATGCCATACCTATGATACGCATTCTGTAGTCAGATTGGTGGCCAT
GCCGTGGCGAAGGAGAGCTGTCGGCGCGCTCTACAAGGTGTTGTCATACT
GCGATTGCCTCACGGCAAACGCTACAAGACAGTCAGTATTATAGTAGTCC
CGCACTCAGAATTCATTTCTTATGCATGTCATAAACAAATTGATGTCAAA
CGAGTATCCATCCGTGTCACGAGCCTACCTCTACAAACCATACAAGCACT
GTATTATCTACAGCAGTATTTCCTTGTAGGGTAAAGAGTCTTGACCAAAC
ATCAGCCCTCCGAGCCTCTCCCGTATATACATTCCTTGGTTTGTTTGCCA
TATACTGGCTGCAAGATAAGGTATGATACAAATGTTGAAACAATTTGACG
TTTGTGGCACCAATCGTCGCGAAGGCGTAGGCGCGCCCTGACGGCGACGT
TTTGCGCAAGCAAGAACCATGCCAAGTGTTTCCAGATATCGCGGCGCTTA
TCATATGTGGCCGAGTGCCACTCCAAACCAGTACAAGAGACAAGTACATA
TAATCGGAGGCGGACGTTGACAACTCCATGAACACCTCTAAACCTACTCC
ATGGTGTCTATCAATAGTGTCTGGTGTCTGTTGCCTGTTGGGACAATCGG
TGCATGGCCGGTCATGTGTACGTGTAAAGGGCTCATCTCATAGTAATAGT
AACGTATTGTGACAATGTCAGCGTTGCGTGTGTGGAAGTCGTGCTGTTCC
CACAATATACATCTCCTCTAGAGCAATGCATCACGATCAATATTGTCCAT
CTCCGTGCCGTATCCAGGGCTCTGTGGCTGGCTTCGCGTTTTCGCGCGCA
ATTACGTCAGTGATGAATAGGCGCTTTCGGCCACGGCTGAGCTCTTCCAA
CTGTTTGATGTCCCCAGTCTCCCATCGTTTCCCAGTATTGACACTACTGT
AAGTATGTGCTCCAGTGCATAGAGCAACGGATCAGAGGCTTCATGTGTCT
CCCACCTCCCCCCCGCCGCCACATCACCCATCGGAAGAGAGGAGCTTACA
GCAGCAGTGGAGAACTAAAGCATTACCTGAACGTTGTATATAGTACTTCG
AGCATATAGTATATAGCCTAACTGCGACCCCTTGCCGCGCCGTATGCCTC
GCTCATCTATATTCCGCCGCATTTCCTCCGTGACAAAGGCAAAGGAGGAA
TCTGGCGTCCGATGTCCGGAGTGCTTTGAGCTGTTCGCGTTCGAGAGCGT
CCAGTCGGTGCCACAGTTGCAGGCCGCGGGGGAGGGGGGTCAAGATGCGG
GTCAAAACGGCCTCCGGTCGGAAGCTCTGCAGGAGACGGGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9527:1692..3885+

>mRNA_S-dermatodea_contig9527.17550.1 ID=mRNA_S-dermatodea_contig9527.17550.1|Name=mRNA_S-dermatodea_contig9527.17550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig9527:1692..3885+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATAGCTGCCCCGTGTGCTACGCCACATTTTCCTGTGGCAATAGCGA
GCCTGAGACTGTCGCGCGACAGCTTCCGTGCGAGCACGTCGCGTGCACTC
AGTGTCTAGAGGATTGCTGGGAAGAAGAAGTGATGGATAGCTGCCCCGTG
TGCTACGCCACATTTTCCTGTGGCAATAGCGAGCCTGAGACTGTCGCGCG
ACAGCTTCCGTGCGAGCACGTCGCGTGCACTCAGTGTCTAGAGGATTGCT
GGGAAGAAGAAGTGGCAAAGGAGGAATCTGGCGTCCGATGTCCGGAGTGC
TTTGAGCTGTTCGCGTTCGAGAGCGTCCAGTCGGTGCCACAGTTGCAGGC
CGCGGGGGAGGGGGGTCAAGATGCGGGTCAAAACGGCCTCCGGTCGGAAG
CTCTGCAGGAGACGGGGTAAGCAAAGGAGGAATCTGGCGTCCGATGTCCG
GAGTGCTTTGAGCTGTTCGCGTTCGAGAGCGTCCAGTCGGTGCCACAGTT
GCAGGCCGCGGGGGAGGGGGGTCAAGATGCGGGTCAAAACGGCCTCCGGT
CGGAAGCTCTGCAGGAGACGGGGTAA
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