mRNA_S-dermatodea_contig95255.17548.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95255.17548.1
Unique NamemRNA_S-dermatodea_contig95255.17548.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: D7G5L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.560e-17
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAVTASG+LYTWGAGENGRLGLGDV DRHTP
Sbjct:  327 QVACGFAYTAAVTASGELYTWGAGENGRLGLGDVADRHTP 366
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A6H5JJV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.840e-17
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAVTASG+LYTWGAGENGRLGLGDV DRHTP
Sbjct:  714 QVACGFAYTAAVTASGELYTWGAGENGRLGLGDVVDRHTP 753
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S2FHZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHZ6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.820e-15
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTA VT  G LYTWGAGENGRLGLGDVEDRH P
Sbjct:  409 QVACGFAYTAVVTTEGALYTWGAGENGRLGLGDVEDRHVP 448
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S3ZR83_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR83_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAV+  G LYTWGAGENGRLGLGDV+DRH P
Sbjct:  311 QVACGFAYTAAVSRDGALYTWGAGENGRLGLGDVDDRHEP 350
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S4E565_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E565_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.820e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAV+  G LYTWGAGENGRLGLGDV+DRH P
Sbjct:  311 QVACGFAYTAAVSRDGALYTWGAGENGRLGLGDVDDRHEP 350
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S3Y9A0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9A0_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 4.680e-14
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYT AV+A+G LYTWGAGENGRLGLGD EDR +P
Sbjct:   68 QVACGFAYTCAVSAAGALYTWGAGENGRLGLGDPEDRLSP 107
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S1XMC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMC2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.620e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAA+TA G LYTWGAGENGRLG+GD +DR+ P
Sbjct:  146 QVACGFAYTAAITAGGALYTWGAGENGRLGVGDDQDRYAP 185
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A7S2HV15_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV15_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-12
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTA VT  G LYTWGAGENGRLGLGD EDR  P
Sbjct:  338 QVACGFAYTAVVTTEGALYTWGAGENGRLGLGDSEDRCIP 377
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: K8YRX9_NANGC (Putative e3 ubiquitin-protein ligase herc3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRX9_NANGC)

HSP 1 Score: 66.6 bits (161), Expect = 7.240e-12
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAVT  G +YTWGAGENGRLGLGD  D+  P
Sbjct:   31 QVACGFAYTAAVTTEGQVYTWGAGENGRLGLGDELDKMRP 70
[Close]
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Match: A0A4D9CRE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRE3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.350e-12
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP 120
            QVACGFAYTAAVT  G +YTWGAGENGRLGLGD  D+  P
Sbjct:  488 QVACGFAYTAAVTTEGQVYTWGAGENGRLGLGDELDKMRP 527
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95255.17548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5L0_ECTSI3.560e-1795.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJV9_9PHAE4.840e-1795.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FHZ6_9STRA3.820e-1587.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3ZR83_9STRA1.820e-1485.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4E565_9STRA1.820e-1485.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3Y9A0_HETAK4.680e-1482.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XMC2_9STRA1.620e-1380.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2HV15_9STRA1.050e-1282.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K8YRX9_NANGC7.240e-1277.50Putative e3 ubiquitin-protein ligase herc3 (Fragme... [more]
A0A4D9CRE3_9STRA9.350e-1277.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95255contigS-dermatodea_contig95255:287..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue5.2e-14
Seed eggNOG ortholog2880.D7G5L0
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 orthologEc-00_008910.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-00_008910.2
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.2542748-CDS-S-dermatodea_contig95255:286..4061622925414.2542748-CDS-S-dermatodea_contig95255:286..406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95255 287..406 +
1694079917.6327772-CDS-S-dermatodea_contig95255:286..4061694079917.6327772-CDS-S-dermatodea_contig95255:286..406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95255 287..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95255.17548.1prot_S-dermatodea_contig95255.17548.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95255 287..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95255.17548.1

>prot_S-dermatodea_contig95255.17548.1 ID=prot_S-dermatodea_contig95255.17548.1|Name=mRNA_S-dermatodea_contig95255.17548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=40bp
QVACGFAYTAAVTASGDLYTWGAGENGRLGLGDVEDRHTP
back to top

mRNA from alignment at S-dermatodea_contig95255:287..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95255.17548.1 ID=mRNA_S-dermatodea_contig95255.17548.1|Name=mRNA_S-dermatodea_contig95255.17548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at S-dermatodea_contig95255:287..406+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTCGCCTGCGGGTTTGCATACACGGCAGCGGTAACCGCCTCCGGGGA
TCTGTACACTTGGGGCGCGGGGGAGAACGGTCGGTTGGGGCTGGGAGACG
TTGAGGACCGACACACGCCT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig95255:287..406+

>mRNA_S-dermatodea_contig95255.17548.1 ID=mRNA_S-dermatodea_contig95255.17548.1|Name=mRNA_S-dermatodea_contig95255.17548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig95255:287..406+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTCGCCTGCGGGTTTGCATACACGGCAGCGGTAACCGCCTCCGGGGA
TCTGTACACTTGGGGCGCGGGGGAGAACGGTCGGTTGGGGCTGGGAGACG
TTGAGGACCGACACACGCCTCAGGTCGCCTGCGGGTTTGCATACACGGCA
GCGGTAACCGCCTCCGGGGATCTGTACACTTGGGGCGCGGGGGAGAACGG
TCGGTTGGGGCTGGGAGACGTTGAGGACCGACACACGCCT
back to top