mRNA_S-dermatodea_contig95237.17546.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95237.17546.1
Unique NamemRNA_S-dermatodea_contig95237.17546.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: D8LH80_ECTSI (Acetyl-CoA acetyltransferase, putative mitochondrial presursor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH80_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.600e-22
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            SLL+AGES++    LTPLARVVA HEVGC+P IMGIGP  AIRGAL+KAGLTLADMDL+EV
Sbjct:  259 SLLLAGESAVNQKQLTPLARVVATHEVGCDPAIMGIGPVNAIRGALQKAGLTLADMDLVEV 319
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7L2YCW3_JACJC (THIM protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2YCW3_JACJC)

HSP 1 Score: 85.1 bits (209), Expect = 3.550e-19
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A ES+L  +NLTPLAR+VA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+EV
Sbjct:   68 AVIIASESALKKHNLTPLARIVAYHSSGCDPSIMGIGPVPAITEVLKKAGLTLKDMDLVEV 128
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7L3WTY4_9GRUI (THIM protein (Fragment) n=1 Tax=Atlantisia rogersi TaxID=2478892 RepID=A0A7L3WTY4_9GRUI)

HSP 1 Score: 83.2 bits (204), Expect = 5.830e-19
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A E++L  ++LTPLARVVA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+EV
Sbjct:   68 AVIIASEAALKKHSLTPLARVVAYHSAGCDPSIMGIGPVPAITEVLKKAGLTLKDMDLVEV 128
[Close]
BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7L2G647_NYCGR (THIM protein (Fragment) n=1 Tax=Nyctibius grandis TaxID=48427 RepID=A0A7L2G647_NYCGR)

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-18
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A ES+L  ++LTPLARVVA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+E+
Sbjct:   68 AVIIASESALKKHSLTPLARVVAYHSAGCDPSIMGIGPVPAITEVLKKAGLTLKDMDLVEL 128
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7L2ZFV0_9PASE (THIM protein (Fragment) n=117 Tax=Neognathae TaxID=8825 RepID=A0A7L2ZFV0_9PASE)

HSP 1 Score: 84.3 bits (207), Expect = 2.190e-18
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A ES+L  ++LTPLARVVA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+EV
Sbjct:   96 AVIIASESALKKHSLTPLARVVAYHSAGCDPSIMGIGPVPAITEVLKKAGLTLKDMDLVEV 156
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A852CIA2_9PICI (THIM protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A852CIA2_9PICI)

HSP 1 Score: 82.0 bits (201), Expect = 2.610e-18
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A E++L  ++LTPLAR+VA+H  GC+P IMGIGP  A+   LKKAGLTL DMDLIEV
Sbjct:    8 AVIIASEAALKKHSLTPLARIVAYHSSGCDPSIMGIGPVPAVTEVLKKAGLTLKDMDLIEV 68
[Close]
BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7K7NAM0_HALAL (THIM protein (Fragment) n=73 Tax=Aves TaxID=8782 RepID=A0A7K7NAM0_HALAL)

HSP 1 Score: 84.0 bits (206), Expect = 3.020e-18
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A ES+L  ++LTPLARVVA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+EV
Sbjct:   96 AVVIASESALKKHSLTPLARVVAYHSAGCDPSIMGIGPVPAITEVLKKAGLTLKDMDLVEV 156
[Close]
BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A8B9GMM3_ASTMX (Acetyl-CoA acyltransferase 2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9GMM3_ASTMX)

HSP 1 Score: 81.3 bits (199), Expect = 3.980e-18
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A E +L  + LTPLAR+VA+H  GC+P IMGIGP  AI  ALKKAGL+L DMDL+EV
Sbjct:   24 AVVIASEDALKEHKLTPLARIVAYHASGCDPSIMGIGPVPAITAALKKAGLSLKDMDLVEV 84
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BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: A0A7K7V2A3_EUDEL (THIM protein (Fragment) n=8 Tax=Aves TaxID=8782 RepID=A0A7K7V2A3_EUDEL)

HSP 1 Score: 83.6 bits (205), Expect = 4.250e-18
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            ++++A ES+L  ++LTPLAR+VA+H  GC+P IMGIGP  AI   LKKAGLTL DMDL+EV
Sbjct:   96 AIIIASESALKKHSLTPLARIVAYHACGCDPNIMGIGPVPAITEVLKKAGLTLKDMDLVEV 156
[Close]
BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Match: UPI0011EA2861 (3-ketoacyl-CoA thiolase, mitochondrial n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA2861)

HSP 1 Score: 85.5 bits (210), Expect = 4.970e-18
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAGLTLADMDLIEV 183
            +L++A E +L  + LTPLAR+VA+H +GC+P IMGIGP  A+  ALKKAGLTL+DMDL+EV
Sbjct:  259 ALVIASEDALKEHKLTPLARIVAYHAIGCDPSIMGIGPVQAVTEALKKAGLTLSDMDLVEV 319
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95237.17546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH80_ECTSI5.600e-2277.05Acetyl-CoA acetyltransferase, putative mitochondri... [more]
A0A7L2YCW3_JACJC3.550e-1963.93THIM protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
A0A7L3WTY4_9GRUI5.830e-1962.30THIM protein (Fragment) n=1 Tax=Atlantisia rogersi... [more]
A0A7L2G647_NYCGR2.000e-1862.30THIM protein (Fragment) n=1 Tax=Nyctibius grandis ... [more]
A0A7L2ZFV0_9PASE2.190e-1863.93THIM protein (Fragment) n=117 Tax=Neognathae TaxID... [more]
A0A852CIA2_9PICI2.610e-1860.66THIM protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
A0A7K7NAM0_HALAL3.020e-1863.93THIM protein (Fragment) n=73 Tax=Aves TaxID=8782 R... [more]
A0A8B9GMM3_ASTMX3.980e-1860.66Acetyl-CoA acyltransferase 2 n=1 Tax=Astyanax mexi... [more]
A0A7K7V2A3_EUDEL4.250e-1862.30THIM protein (Fragment) n=8 Tax=Aves TaxID=8782 Re... [more]
UPI0011EA28614.970e-1862.303-ketoacyl-CoA thiolase, mitochondrial n=1 Tax=Arc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95237contigS-dermatodea_contig95237:245..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D8LH80
KEGG rclassRC00004,RC00326,RC00405,RC01702
KEGG koko:K07508
KEGG ReactionR00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathwayko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG ModuleM00085,M00087
EggNOG free text desc.negative regulation of mitochondrial membrane permeability involved in apoptotic process
EggNOG OGsCOG0183@1,KOG1391@2759
EC2.3.1.16
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyl-CoA acetyltransferase, putative mitochondrial presursor
Ec32 orthologEc-24_000870.1
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.1566029-CDS-S-dermatodea_contig95237:244..4481622925414.1566029-CDS-S-dermatodea_contig95237:244..448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95237 245..448 -
1694079917.5693347-CDS-S-dermatodea_contig95237:244..4481694079917.5693347-CDS-S-dermatodea_contig95237:244..448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95237 245..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95237.17546.1prot_S-dermatodea_contig95237.17546.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95237 245..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95237.17546.1

>prot_S-dermatodea_contig95237.17546.1 ID=prot_S-dermatodea_contig95237.17546.1|Name=mRNA_S-dermatodea_contig95237.17546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
SLLVAGESSLAPNNLTPLARVVAWHEVGCEPEIMGIGPAGAIRGALKKAG
LTLADMDLIEVRLGSHA*
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mRNA from alignment at S-dermatodea_contig95237:245..448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95237.17546.1 ID=mRNA_S-dermatodea_contig95237.17546.1|Name=mRNA_S-dermatodea_contig95237.17546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig95237:245..448- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTTTTGGTCGCGGGAGAATCCTCCCTCGCACCCAACAACCTGACACC
TCTAGCTCGTGTGGTGGCGTGGCACGAAGTTGGGTGCGAACCTGAAATCA
TGGGCATTGGCCCTGCAGGTGCCATTCGTGGCGCCTTGAAGAAGGCGGGG
CTGACCCTGGCGGACATGGATCTTATCGAGGTGCGTCTCGGAAGCCACGC
CTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig95237:245..448-

>mRNA_S-dermatodea_contig95237.17546.1 ID=mRNA_S-dermatodea_contig95237.17546.1|Name=mRNA_S-dermatodea_contig95237.17546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig95237:245..448- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTTTTGGTCGCGGGAGAATCCTCCCTCGCACCCAACAACCTGACACC
TCTAGCTCGTGTGGTGGCGTGGCACGAAGTTGGGTGCGAACCTGAAATCA
TGGGCATTGGCCCTGCAGGTGCCATTCGTGGCGCCTTGAAGAAGGCGGGG
CTGACCCTGGCGGACATGGATCTTATCGAGGTGCGTCTCGGAAGCCACGC
CTAAAGCCTTTTGGTCGCGGGAGAATCCTCCCTCGCACCCAACAACCTGA
CACCTCTAGCTCGTGTGGTGGCGTGGCACGAAGTTGGGTGCGAACCTGAA
ATCATGGGCATTGGCCCTGCAGGTGCCATTCGTGGCGCCTTGAAGAAGGC
GGGGCTGACCCTGGCGGACATGGATCTTATCGAGGTGCGTCTCGGAAGCC
ACGCCTAA
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