mRNA_S-dermatodea_contig9510.17540.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9510.17540.1
Unique NamemRNA_S-dermatodea_contig9510.17540.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9510.17540.1 vs. uniprot
Match: D8LRX6_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.710e-13
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  103 GLQLIDLHSAAKQDDIMAVIRLLKEGANVDKRDPYGYTPL 222
            GLQ +DLHSAAKQDDIMAV++LL+EGA +DKRDPYGYTPL
Sbjct:    5 GLQFVDLHSAAKQDDIMAVVKLLEEGAPIDKRDPYGYTPL 44
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BLAST of mRNA_S-dermatodea_contig9510.17540.1 vs. uniprot
Match: A0A7S4KW95_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KW95_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 5.470e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  115 IDLHSAAKQDDIMAVIRLLKEG-ANVDKRDPYGYTPLHWACQKG 243
            +DLH AA++ D++ + +LL      VDKRDPYG TPLHWACQ G
Sbjct:    3 LDLHKAAQKGDLLLMDQLLSSRKVVVDKRDPYGGTPLHWACQAG 46
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9510.17540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRX6_ECTSI6.710e-1382.50Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A7S4KW95_9EUKA5.470e-656.82Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9510contigS-dermatodea_contig9510:1666..7421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D8LRX6
KEGG koko:K04558,ko:K09256,ko:K21878
KEGG Pathwayko05012,map05012
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03036,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-08_002820.1
Exons3
Model size426
Cds size426
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9510.17540.1prot_S-dermatodea_contig9510.17540.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9510 1666..7421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925413.6373868-CDS-S-dermatodea_contig9510:1665..18741622925413.6373868-CDS-S-dermatodea_contig9510:1665..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 1666..1874 +
1694079917.199207-CDS-S-dermatodea_contig9510:1665..18741694079917.199207-CDS-S-dermatodea_contig9510:1665..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 1666..1874 +
1622925413.6516836-CDS-S-dermatodea_contig9510:2321..24061622925413.6516836-CDS-S-dermatodea_contig9510:2321..2406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 2322..2406 +
1694079917.211864-CDS-S-dermatodea_contig9510:2321..24061694079917.211864-CDS-S-dermatodea_contig9510:2321..2406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 2322..2406 +
1622925413.6673064-CDS-S-dermatodea_contig9510:7289..74211622925413.6673064-CDS-S-dermatodea_contig9510:7289..7421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 7290..7421 +
1694079917.2311249-CDS-S-dermatodea_contig9510:7289..74211694079917.2311249-CDS-S-dermatodea_contig9510:7289..7421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9510 7290..7421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9510.17540.1

>prot_S-dermatodea_contig9510.17540.1 ID=prot_S-dermatodea_contig9510.17540.1|Name=mRNA_S-dermatodea_contig9510.17540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
RGPGLCLCSHRSPFILPKMAVAAFGGVNTIAGDGGLQLIDLHSAAKQDDI
MAVIRLLKEGANVDKRDPYGYTPLHWACQKGHTHTVQALLAAGANVHVRD
KWRRTPLHRAAKEGHKETVSALLDSGAEINAQVGLSFQIFR*
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mRNA from alignment at S-dermatodea_contig9510:1666..7421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9510.17540.1 ID=mRNA_S-dermatodea_contig9510.17540.1|Name=mRNA_S-dermatodea_contig9510.17540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5756bp|location=Sequence derived from alignment at S-dermatodea_contig9510:1666..7421+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGGCCAGGCCTCTGTTTGTGTTCTCATCGATCGCCGTTCATCTTGCC
CAAGATGGCTGTGGCTGCCTTCGGGGGGGTCAACACAATCGCCGGCGACG
GAGGTCTGCAGCTGATAGACCTACACTCGGCCGCCAAGCAAGACGACATC
ATGGCGGTCATCCGCCTGCTCAAGGAGGGCGCCAACGTCGACAAGCGCGA
TCCTTACGGGTGAGTATTCCAGGCCCTTCTGCAAGTAGTGTCAAATGAGT
GATACTTTACAAAGCAACTATCATATTAATATTATTAATATTAATACTAC
ACTATTACTACTATATACTGCTCCTGTAATCATATACTGTAATACCACAG
GCACAGCAGCACTCCTGCTGTTACATTTTTCTAAGAGATTCGCGCGGATT
CGTATACACAGGCCTCAGGGGCAACACGACGCCAGAGTGTTTGGCGCAGC
TCTGAGCAGCTAGCTGCTGTGTTACAGAAGAATCGCGCTGCTTCGCCCCC
CTTTCGCCTGTGTCACCCGCACACGAGCGGAACTGTCGCATGTGTACCGT
AGAATGATCAGATCGATGGCGCTCCACGCGGAAAGCGGAAAGCAAATCCG
GCGGCGACTGCTGCTGCCTCTTCCTTTCTTTGCTGTCTTGCCTCTTCGCT
TCCCAGGTACACCCCTTTGCATTGGGCCTGCCAGAAGGGGCACACTCACA
CTGTCCAAGCTCTTCTCGCTGCTGGAGCCAATGTGCATGTGGTGCGTCGA
GTTGGCGGGTTTGAGTGAATGTGAAAATCCAATCCAACGCTCTCTTCTTC
CTTGTCTTCTCCCTCGAAAGCCTCTCCGCCCGCAAGGGAACGAGTGGGTG
TCTTGCTTGGTTGGTTGATAGAGATGTTTTCTTATTTATGATTTCATTTG
ATTTGCTTTTTCGTGGGGGTCGATTCTGGCGGTACACTGTTTGTAGTATA
ATAAACATGCAGTGAGTGCTGCAGCAGCAGGCAACAACTGCTGTATTTTT
GTTGTGTTCTCCTTGGATGGCGCCCTTGGTTGAGATTTCGTTTTGTTGTT
GTCCCTTTACTCCCATTCGCCGGGTGCGAGAGACGCACAGCATCGGCATT
TGCTGCGTACTATTTATGTCGTGTCTACGACATAGCGTATCACATCATTA
CATATAATTGAGAGTAAAAATACGTAAAAACTACAATATTAATACAGAGT
AGTACAAGTGTGGGGGGGGGGGGGACAAGTGTGTGGTGGAAACAAGAACA
ATTCCAAAATTTCAGATTTTTGGACCCTATTTTCCGTTTTCTTGGTGGGC
GGTTATTGATGATTGCGGAAGAAATCAGATACAAATACCACTGACTGTGT
TATGTCTGTCTGGATATCTGCGAAAGAAACTAAAGCGCCCTGTGTGCTGT
GCGCCAGACTGTCCAAGACCCCCCTCCCGCCCCACTCACACCCACGCCCA
CACGCACTATGATACGCACACGCAAGTATATAACATGCTTTCTCAGCGAA
GAAGGCCGCCCCCCCGCCCCAAGACCTTATAAATATTATAAATATATAAT
ATGATCTGAAGAAGGCCCGCATCTGAAAAATATCATCAAACCTGCGTATG
ATATCATATTATATCACATATAATATAACATATCACATGTATTTTGTAAT
ATTTTTACGTACAGTATAATACGTGTACTTTGTGCTTTGTGGGGGTGGAG
TACAAGTAGTGTAGTCCTGTGCCCGAATTCTATCGAGATCGTTATCGAAT
TCTATCGAGATCGTTATTGGATCGTCGGAGCACTCGGTCGGTTCTTTCCC
CTTGAGGTGGGTATGGTGCAATAGCGCAACAGACAGCAGCACCAACCAGT
ATGTATGCGTAGTACTCGGATTGGCTCGTGTAGATTTCGTTGTGGATCTG
ATATGTGCATAAATATTGTGATATTAATATCATACCGGTTAAAAAAATGC
ACCAGTAGTATCATGCATACCAGATTAATATGCATATCGTACCAGCACAC
CAGCACACACTTTGTATTAATAGGTGTTTTTTCATTTCACAAGCGTCGGT
TTTTTATCTCCCCGAGAGTTGCCGTTTTTGGACTTTTGAAACAACCGGAT
GCGGGAAAAATCGCCCGCAAAGGCTCGGCAGTGTTGCACGGGATGCACGG
AAGACGGTGGGGCTGGTGTTGTCGAAGTTGGCGCTGTCGTCGTGGTTTGG
CGGGCGCGGCAGGGTGGGCTATATCTGGGATCACAATCGGAGATTTTATG
ATTTGTATGGTTTTTTAGCCGAGTTTTTGTTCGTCGGGCCAGTTTACATG
CGCGACAAAGATTTGAAAATTCGAAGATTTGAAGGAAGAAGGCTGCTGTA
AGGCAGGTTACTTTAGAATATACTATGCACGTGAAATAAACTATTAATAA
CTGTGTGCCGGCCGAGGTTCGGCGTGTTCTTGCCACGAGGGCGTGTTCTT
GCCACGAGCCGTTTCTTTTCTCCTGCCTCTCGCGAAACAAGCGCGCATTT
GATTGATTTGGTTGCTCGTTTTTGAACATATATACCATACGTCAACATCA
AACGTGAACTTTCCTTTTGTTTGTATGGATAGGATAGGAGGGGATTGTTC
AAGCACGGCGTTGTCTGTGCGCATCTACAGTACAGTTATTTGATTTTGAT
TTGATCTGATATGCACACGTATAGCCGATCGGCTTAATCCGACCCGACTT
GTGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAACTAATCA
GAAGTCTACTTCTACTTTACATCCTACCGTCCCTGGTACTTACTATGGTA
CAAGAAATAAGAAATAGCACCCCAGATATAGANNNNNNNNNNCAAGGAGA
AAAATAATTAAATCATAATTTTACTTCTATATACACCGTACCGTCCCTAG
TATGATACTTACTATGGTACAAGAAATAAGAAATAGCACCCCAGATATAG
AGAAAACGCTAGAAGGGAACTCGGACTCAAACAATGCTCCCTCGCCTCTC
CACAGGTCCTTTTTGAGCTACAGTTGCAACGCGGCAGGGATATCAGTATA
AGAGTTAGAGCAGGTGGAAAAACAAAACAAATATCATAGGAAATCTAGAG
AATAAGGACAGAGCAAAGACAAAATATATTAGCAGTATGTATATGTGTGC
CATCATATGCATGTCAATACCACGACACATACAGCATGATATGGTGTGAC
TATCTCGGGTATTCATGTCTAGATACGTCTGTAGTAGACCCTATGCCGCA
TGTACTACATCTGCAACACAACAGGCGGACCTATTAAGAGCCTAGAGCTC
TACAACGAATGCAAGCTATTATAGTGCAAGTGTCGCTTGCATGGGGGGGG
GGCGTATTCATGCTTTTCATGCCTTAGCAATACGTATTCATGCATCGAGA
GGACGGGCCATTGTTCCCACAGGATCGATCGGTTTGCGCGAGGGGGGGTA
ATAGGCTGGCGGACAAGGAGAAGGTGGACTTATCGAAGTACCATCATAAT
ATGCATCGTGCTCACCCAAGGGAGGTGATATGCTTACTTGTGGAGCTCAC
CCAGCCAGAAGGTTCCGCGCTTGCTGGTGACCCCCCCCCCCCACCCCCCT
AGCCAGAAAAACGACTGGAGGGGCATCAAAATGCCGATAAATGGGTCCTG
GATGCATGCCATGCTACAGTACATATATAGATATATATGTCATCCGTCAT
ATAGATTTTGCCGCAATGGTGTCTGACATATTGAACCGAGGCCCGACTCC
GCACCGCCGTGGACAACGTTCGTTTGAATAGGGGGCTATTAATTCTTGAC
GCCCACTTCTGTCTGAGATACCGCTCGCCAAGATTCAGGTCGCGCATTGG
CTTTTGGCGGGAGGCATGTTGCTCGGCATATGCCCTGAAGACGATATGAT
CTGCCGATGTAATTTTTTTCTTACACGGCCCGCGGTCGGTGCAATCGTCT
CAGTCTTGTGAATACAACAAGGTCTACCCGGGTTCTATCCCTATATGTTA
TTTGGAATGGACTTGTACCCGTTCTGTGTTCTGTTGCTTGAGTAAAACAA
AACAAATATGGGCCAAATTCCCACCAAGTTCCGCGTCGGCCAACACTCAT
CCCGCTACGGGTCAATGCGTGGTATGCCATGCCATGCCGTGTGGCACGCC
GCATCTCACAAAGTATTTTGAGAGAAGCCACGGCGGCCAGGCGACGAATC
TGTACCAAACACAATTTTCCCACCGATGCATGCAGTGACCTCGATTGCAT
GGCTACATGGTTTGGCGTTTGGCGTGGCCACGTCGAAAACGGTCTGTGAT
TGGTCGATGCTGTGTCACTAGCGGCTTGTGATTGGCCCGCGCTGTGTCTG
ATCATAATATGTTGCTTCTGTCCCGCAGCAGTAAAAAAAAACACGCCCTC
TTGTTCTAGAGTATGATAATGTAATAGTGGCTGCCCTGTTGGGTTTTCCA
CTGTTGGCAAGGCGGGACTGCTGTGCCGTTACCGGCTTTCCCAGCATCGA
TTTAACCCTTTTTTGGTTTGATAGCATACTCAATCCGTGTTCGGGGTTAG
GCCACCTGCCCGCACCTTTTTTCGCATCGAAAATGTACAGACAGTACCCT
AACGGTGGCTACTGACTCCTCGCCGTAGTGGCGGTGTAAAAGTGACCACC
TCTGTCGCGGTTAGCTAGCTACCTAGCTTGCGTGCACCCGCCGCCGCGCG
ATACACGGGTAGCGACGAGTAGTGACGAGACAGTCGGCGCAAAATTGGAC
CCGGTTCCCACAGGGTTAAGCGCTGTGTCATATGTATGATCGGTAGGAGG
CCACTGGCTGGCTATCATGCGCTCCGGAGGGATAAGGGGGGGGGGGGGGG
GGGGCTCGGGTGTTCCACCTTTTGGGGCTGGTTGCCCCTTTTAAAAACAA
GGGGAAAATAAACGCCTTCCATTTTTGTGTGTGTTTTTTTTTAGTTTTTT
GGTGTGTTGTNNNNNNNNNNGGTTCGCTGCGTGTGCCCTGTCGTTAATGT
TTGGGGGTGGGGGGGGGGCCCCGGCGGGTGTTCGTTGGGCGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGAGCATCGTGTATGCACCTCTTGGTGCTCGT
TGTCCCTCTTTAAAACCAAGTGAAAAGTAACGCCTTCCATGTATCATGAT
GTGTTGTATTAGGATTTATGAGTATCGTCGTCGTCGTCGTCCCATCCCTT
CTTTTTTTGTTTTTGCATGCAATTGCCATCGAGTCAGCAGTCGCGTAATT
TAATTGCCTGAATATAATGGTTTTCCGTCATCAGTGTGCTGCTGTCTGTG
TATCCTTGAACATTGGTCATCGTTGTCGCGTCCATCATGTCGCTGTTTTT
TCGTTCATCTATGTCCGCATGTGTCCTGTATTCAATAAAAGCGAGTGGGT
AGCCACGGCCACGCCGGTGAGGTGTGCGTTGGCACAAAGCAGCTACCACT
AAAAATGTCTCCGTATCACTTGGCATCACGAATTGTGTAGGAAATTGTAT
AGGAAATTCGGCATCATAGGTCAACTATAAATTGCTATAAAAAACGTGCA
AAGCAGTATTAATTATTATAGTAAAGATAACACACTTTGATATGTACCCT
ACCTCTGTTTTGTTCCCTACCCAGAGAGATAAATGGAGGCGCACACCGCT
TCACCGTGCGGCGAAGGAAGGGCACAAGGAAACGGTATCCGCTCTGCTCG
ACTCCGGGGCCGAGATCAACGCTCAGGTTGGACTCAGCTTTCAAATATTT
CGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9510:1666..7421+

>mRNA_S-dermatodea_contig9510.17540.1 ID=mRNA_S-dermatodea_contig9510.17540.1|Name=mRNA_S-dermatodea_contig9510.17540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig9510:1666..7421+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGGCCAGGCCTCTGTTTGTGTTCTCATCGATCGCCGTTCATCTTGCC
CAAGATGGCTGTGGCTGCCTTCGGGGGGGTCAACACAATCGCCGGCGACG
GAGGTCTGCAGCTGATAGACCTACACTCGGCCGCCAAGCAAGACGACATC
ATGGCGGTCATCCGCCTGCTCAAGGAGGGCGCCAACGTCGACAAGCGCGA
TCCTTACGGAGGGGGCCAGGCCTCTGTTTGTGTTCTCATCGATCGCCGTT
CATCTTGCCCAAGATGGCTGTGGCTGCCTTCGGGGGGGTCAACACAATCG
CCGGCGACGGAGGTCTGCAGCTGATAGACCTACACTCGGCCGCCAAGCAA
GACGACATCATGGCGGTCATCCGCCTGCTCAAGGAGGGCGCCAACGTCGA
CAAGCGCGATCCTTACGGGTACACCCCTTTGCATTGGGCCTGCCAGAAGG
GGCACACTCACACTGTCCAAGCTCTTCTCGCTGCTGGAGCCAATGTGCAT
GTGGTACACCCCTTTGCATTGGGCCTGCCAGAAGGGGCACACTCACACTG
TCCAAGCTCTTCTCGCTGCTGGAGCCAATGTGCATGTGAGAGATAAATGG
AGGCGCACACCGCTTCACCGTGCGGCGAAGGAAGGGCACAAGGAAACGGT
ATCCGCTCTGCTCGACTCCGGGGCCGAGATCAACGCTCAGGTTGGACTCA
GCTTTCAAATATTTCGGTAGAGAGATAAATGGAGGCGCACACCGCTTCAC
CGTGCGGCGAAGGAAGGGCACAAGGAAACGGTATCCGCTCTGCTCGACTC
CGGGGCCGAGATCAACGCTCAGGTTGGACTCAGCTTTCAAATATTTCGGT
AG
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