mRNA_S-dermatodea_contig9509.17539.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9509.17539.1
Unique NamemRNA_S-dermatodea_contig9509.17539.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9509.17539.1 vs. uniprot
Match: A0A6H5KJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ39_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.920e-10
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 GGICALGRFDDGRNEYYRLNACTTADETPVGP-VGPTPAPTVAPPTATREP--MGPPIDYRGDGDDEDLRE 204
            GG+CALG F+DG  EYYR+ ACTT +ET   P +GPT            +      P+DYRGDGDDEDLR+
Sbjct:  252 GGMCALGHFEDGHEEYYRVKACTTEEETEKNPDIGPTXXXXXXXXXXXXDSHNAAAPVDYRGDGDDEDLRD 322
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9509.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ39_9PHAE3.920e-1050.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9509contigS-dermatodea_contig9509:1770..5356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003710.1
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9509.17539.1prot_S-dermatodea_contig9509.17539.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9509 1770..5356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925413.5832653-CDS-S-dermatodea_contig9509:1769..20461622925413.5832653-CDS-S-dermatodea_contig9509:1769..2046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 1770..2046 -
1694079917.158049-CDS-S-dermatodea_contig9509:1769..20461694079917.158049-CDS-S-dermatodea_contig9509:1769..2046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 1770..2046 -
1622925413.5940785-CDS-S-dermatodea_contig9509:4223..43101622925413.5940785-CDS-S-dermatodea_contig9509:4223..4310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 4224..4310 -
1694079917.173106-CDS-S-dermatodea_contig9509:4223..43101694079917.173106-CDS-S-dermatodea_contig9509:4223..4310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 4224..4310 -
1622925413.6059659-CDS-S-dermatodea_contig9509:5303..53561622925413.6059659-CDS-S-dermatodea_contig9509:5303..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 5304..5356 -
1694079917.1860635-CDS-S-dermatodea_contig9509:5303..53561694079917.1860635-CDS-S-dermatodea_contig9509:5303..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9509 5304..5356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9509.17539.1

>prot_S-dermatodea_contig9509.17539.1 ID=prot_S-dermatodea_contig9509.17539.1|Name=mRNA_S-dermatodea_contig9509.17539.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
GGICALGRFDDGRNEYYRLNACTTADETPVGPVGPTPAPTVAPPTATREP
MGPPIDYRGDGDDEDLREGGYGSSSWTHPGTDGRTGGGGRDHSDDDSGAN
DSDDDSGDGHSKDDDSGDDTRDQQDTNDPSDDNSGRSSD
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mRNA from alignment at S-dermatodea_contig9509:1770..5356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9509.17539.1 ID=mRNA_S-dermatodea_contig9509.17539.1|Name=mRNA_S-dermatodea_contig9509.17539.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3587bp|location=Sequence derived from alignment at S-dermatodea_contig9509:1770..5356- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGGTATTTGCGCTCTCGGGCGCTTCGACGACGGCCGTAACGAGTACTA
CAGGTGAGCATTTTGGTTTCCTTGAGGAAGCGGGGAAGGTGTTAAGTGGG
CAGGGTCGCCTTCAAGTCAAACATGCCTCAGCTGTCAGGCCATTGACCAC
GCATCCTCAGAACCCGCGGGGAGGGGGGGGGGGGGGGGGGGGAAGGGTCG
TTTTACAATATGGTATACCTTAGCCGTTAGGCCGTTGAGTACAAGTTCGT
TTCCTCGGGAAGACGGAGCATTGGTTCCACAGGATCGATCGATCCACGAT
GGTCAAACGTTCTTTTGTGCCCGTCTTCACGCAGCCGCCGCCCCTCCGCC
GGTACTGCCGTAAACGCAATGGTGATGCGTATCAAAATCACTTTGTTTCA
TCGTTGTGAGACGCAACCAGCCTGGCCGGTGAACACCCTGCATACCACTC
CGCTCCGTCCTGGCTTTGGTGTGACTAGTAGACAGCCACGGCTACGCCCG
TGAGGTGTGAGTTGGCAGGACGATGTGTGGAATGAACCGGGGTGTACTGA
GCGAGAGCGGTGTGCGCGGGCGACTGGGCGAGCTCTTGTCTAAAATCAAG
TTGTTTGAGGATCAAGAATTGTACAGGGTTTGAGTTTCATCAAAATGGTA
AAGGATTTTTATGCTACGGAATTCGTATAGGAAATTGAGCGATTATTTGT
TAACTCTAAAATGCGATTTCAAAAAAAGCAAAGCGCTTGTCTAAGATCAA
ACTGTTTGGGGATCAAGAATTGTACAGGATTTGAGTTTCATCAAAGTCGT
TAAGGATTTTTGTGCTACGGAAATCGTATAGGAAATCGTGCTGGCATTGT
TAAATCTAAAACGCACTCTTAAACAAACTTTGAAAGCGGTAATTACATTA
TTTATGACATGAAGATTGTTGGGTTATGTCCGTTTGGGTATGGCACGACA
TGCGATTAACACGACCCCCCCCCCCCCCCCCCGGCGTTCACCCACCGCCG
CCTCTGCCTATTCGGTCCTGTTTGCCCGCGCTTTCCGAATATTCAGGCTG
AACGCTTGTACTACAGCCGACGAGACGCCTGTGGGGCCTGTAGGACCTAC
CCCTGCACCAACTGTGGCTCCCCCTACGGCAACGTAAGTAAGTGTTGGAA
ACAACAAGGTGAACCCCACACTCAACACGTCAACTTTCATGTAAAGTATG
GGCCAACTTTCATGTAAAGTATGGGCCTGTCTTTAACGAGATATTCTTTT
GTGTCGGGTGACAGATGTGTTTGACAGATTCAGCGACAACAGGTGTTGGT
TGTGTGTTAGTTTGTGTGAAGAAGTGTAATGCACGGCAAACAGAGGGTGC
AACAGAAGCAGCCGCAGCAGTCGATTGATCGATCGATTACTGGCTAAAAA
GATGAAACCCCCCAGATGACGCTCCTCTCTATACAGCCGTTTGACTCCGA
CTCTTGCCAGTGTCACTCGCCCGAGCATAGGCTGGTACTGGCTGGCACCT
AGCGGCAACAAAGATGTCGGTTGACGCAATTTGAGGGCCTTGACAGACAA
GAATTCCCAAACGCCTTGATAGACAGTCTTGACGGTAAAAAAACAGGGGA
CACAAACAAAAATTCCATTTTTTGGAAATCGTCTTGATCGTAGTGTTGAA
GGAGACATTTTTTCCGCATTGTTTGTGATTTAAGTACTCATTTCTCCGAG
CTGGCCTGCAATAGCGCGCTGCCAGTGTCTGTGTGTGCCGGCAGCAGCCA
GTAGGCAGCAGGCTGAAAGGTGTATACATATGATATACCTGGTATAGAAT
ATAGAGTACATGCGTGCTGGCGTGCTTTTATACTGGTTGTAGTATTGGTG
TTTCCGTCAAGATAGTGATATAATACTCTACCGGGGATAGGGGGCGTTTT
GGCTTGACAACTCAAATCGCCTTGACGGACAACCTTGACGCTTGACAAAC
TTGACGCTTGACCGTCAACGGACATATTTAGTGCGGCATCGCTGTGACAC
GGTCGGCTAGGATGGAGGGGACGAGGGCGTGTCTCTTCCTGGTCTGTACC
CATTTTTCGTCCTTGGCGTGGCTTGGCATGGCCCTGACTTCCGAAAAGCT
GGTCATGACCACATACATCTCAACTTCTAGCGTACTCTCGACGATGCTGG
TGCCACCACGATCACCACACCTTGATTATTATGCCTTTAGTGCCGGTGGC
GTGTTGGCGCGACGTCCGATCGCTTAAGTCCACTCTGCTGATTGAGCCCG
TTTCGGGACTTTTGGCGCCACCTTTTCTTCGGGACACCGAAGCAGACACA
GCAGATCTGTCGGCGAAAAACAACCTCAACAGTTTGTTTTTCTTTTTTTT
TCAATTCGTCGGGAACTTAACTAATTTTTCAACAACTATTTAGTTTTTTA
GGATGTCGTTCGACCAATCATGTTCCTGACATGTAATGGACAGATTTGTT
TTGGCTCGTGAAGACAGCAGGCTCCTGTTTTATGGTATCGCTGGCCCAAT
ATAAAGCACGTGCTGGAAGACTATACAAGTATGCATACAATATGGTTGGG
TATGACATACGTACAACTGCTCCCCTTATGGGTTTTACAATGTATTTCTC
CCCATCGTGACTCAAATTGTTGGAGAGCAAAGTGGTTATATGTACTTACT
GGACGCAGGACATCACGGCTACCACCTTTGATTTTTATCAGCAGGCGACA
CTTTCATCGATGGCCCGAAATAACAACTTGTATTCCTCTGTTGCTTTTCC
CTGAAAAACAACTCGCATAAAATGGTCTCCCAAGACATCGTTCGCGCTGG
TTTTGTTCAAATGCTGTCGCATATTTTCAAAACTTTAACTCTCTGTCGTT
TCGGTCGACGGGGCCCGATCTGATCTACGGCTGTGTTTATGTTTTTTTAT
CCATCTGTATTTAGCGTGAGAGTAGGAAGCCACGGCTACACCCGTTAGGT
GTGCGTGGTGGCTCAACTAGAAAATCAAGTTTTTTGGCATCACTCAAACT
CGTATAGGGCTTTAGTGCACAAAATTGGCCTCAACAATCGTACAGAAAAA
CACGTTCACTCTTGTATTAATTAATAAAGATATATGGTAAAGCGAACAAC
GACAGCTACAACCCCGGCAGTACATACCGTCTCGCAATGTCCGTCAACCA
AAGAGAGGCCAGCCCGGGACATAACTCTCCCCTGTAGGTCTGAAAACGTT
CCCTCACTACCATTGTGTTCGTTCACTTCGCGCCCACTCCCCTGTAACCT
TCGTGCCCCGCCCGCCCACCCACACGCCGCGGGTACATACATACCTCCTC
CTACACACAGGCGCGAACCGATGGGCCCGCCTATCGACTACAGAGGCGAC
GGTGACGACGAGGATCTCAGGGAAGGAGGCTACGGCTCTAGCTCTTGGAC
CCACCCGGGCACGGACGGCCGTACCGGCGGGGGCGGCAGGGACCACTCCG
ATGACGACTCCGGCGCCAACGACAGCGACGACGACTCTGGCGACGGCCAC
TCGAAGGACGACGACAGCGGCGACGACACCCGGGACCAGCAGGACACCAA
CGACCCCTCCGACGATAACTCGGGCCGCAGCTCGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9509:1770..5356-

>mRNA_S-dermatodea_contig9509.17539.1 ID=mRNA_S-dermatodea_contig9509.17539.1|Name=mRNA_S-dermatodea_contig9509.17539.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig9509:1770..5356- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGGTATTTGCGCTCTCGGGCGCTTCGACGACGGCCGTAACGAGTACTA
CAGGGGGGTATTTGCGCTCTCGGGCGCTTCGACGACGGCCGTAACGAGTA
CTACAGGCTGAACGCTTGTACTACAGCCGACGAGACGCCTGTGGGGCCTG
TAGGACCTACCCCTGCACCAACTGTGGCTCCCCCTACGGCAACGCTGAAC
GCTTGTACTACAGCCGACGAGACGCCTGTGGGGCCTGTAGGACCTACCCC
TGCACCAACTGTGGCTCCCCCTACGGCAACGCGCGAACCGATGGGCCCGC
CTATCGACTACAGAGGCGACGGTGACGACGAGGATCTCAGGGAAGGAGGC
TACGGCTCTAGCTCTTGGACCCACCCGGGCACGGACGGCCGTACCGGCGG
GGGCGGCAGGGACCACTCCGATGACGACTCCGGCGCCAACGACAGCGACG
ACGACTCTGGCGACGGCCACTCGAAGGACGACGACAGCGGCGACGACACC
CGGGACCAGCAGGACACCAACGACCCCTCCGACGATAACTCGGGCCGCAG
CTCGGACGCGCGAACCGATGGGCCCGCCTATCGACTACAGAGGCGACGGT
GACGACGAGGATCTCAGGGAAGGAGGCTACGGCTCTAGCTCTTGGACCCA
CCCGGGCACGGACGGCCGTACCGGCGGGGGCGGCAGGGACCACTCCGATG
ACGACTCCGGCGCCAACGACAGCGACGACGACTCTGGCGACGGCCACTCG
AAGGACGACGACAGCGGCGACGACACCCGGGACCAGCAGGACACCAACGA
CCCCTCCGACGATAACTCGGGCCGCAGCTCGGAC
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