prot_S-dermatodea_contig95.17526.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig95.17526.1
Unique Name	prot_S-dermatodea_contig95.17526.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	218

Homology

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.190e-135
Identity = 196/217 (90.32%), Postives = 207/217 (95.39%), Query Frame = 0

Query:    1 MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            MKMEIGA+AL +L+  TAFVAPSAF GSQIAR Q++++AT TKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELP AAWVQIL AI +VELT+GKQDYENKAPGELGNFGQ+WNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQL+SGHLSPFGDGQG F
Sbjct:    1 MKMEIGALAL-TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.560e-86
Identity = 136/208 (65.38%), Postives = 169/208 (81.25%), Query Frame = 0

Query:   10 LCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            L SL+ A AF AP AF G+++A  + SS A  + M+VND+LGADVET GV+DPLG+ KD+A+LFRRR VELKHGR+ MLA  GYL AE +HPLYDGK+  GL A+ ++P A W+QI+AAIG+VELT+GKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IMG MVQE LTGQT + QL+SGH+SPFGDGQG F
Sbjct:    9 LASLAGAAAF-AP-AFMGAKVAAPRVSSKAVVS-MSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPFGDGQGAF 212

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 250 bits (638), Expect = 2.940e-81
Identity = 120/178 (67.42%), Postives = 148/178 (83.15%), Query Frame = 0

Query:   40 TTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            T  +MAV DM+GADVET GV+DPLG+ KD++SL+R RAVELKHGRVAMLAV GY  AE WHPLYDGK+ PGLKA+ ++P A W+QILA I  +EL+IGKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI G +VQE +TGQT ++QL  GH+SPFGDGQG F
Sbjct:   35 TAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 7.340e-81
Identity = 118/176 (67.05%), Postives = 149/176 (84.66%), Query Frame = 0

Query:   42 TKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            T+MAVND+LG+DVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G   +E +HPLYDGK+SPG+KA+GELP  AW+QILA IG++ELT+GKQD ENKAPG+LG FG ++NP+ ++P  F++LQLKELKNGRLAML   G ++QE +TGQT  EQ+++ HLSPFGDGQGFF
Sbjct:   31 TRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.100e-63
Identity = 123/219 (56.16%), Postives = 149/219 (68.04%), Query Frame = 0

Query:    5 IGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG------LKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            +  VA+ SL+   AF  PSAF+G  +AR    + A T +M+V DM+G DVET G+FDPLG+ KD+ASLFRRRAVELKHGR+ MLA  G L     H L D   S        L+ L + P AA +QIL AIG++ELT G QDY NKAPG+LG FG ++ P  D+    ++LQLKELKNGRLAM+ IMG +VQE LT Q  IEQL  GH SPFGDGQGFF
Sbjct:    4 VACVAVASLAGVAAFT-PSAFAGKALARPAARTHAVT-RMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.230e-57
Identity = 107/182 (58.79%), Postives = 132/182 (72.53%), Query Frame = 0

Query:   41 TTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG-LKALGEL----PFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            + +MAVN+M+G+DVET+GVFDPLG  KD+ASL+R R +ELKHGRVAMLA  G L    +H   +   +P  L AL ++    P A W QI  AIG +ELTIGKQD  N+APG++G FG ++   PD+   F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ  IEQL  GH SPFGDGQG F
Sbjct:   29 SVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.400e-57
Identity = 106/188 (56.38%), Postives = 128/188 (68.09%), Query Frame = 0

Query:   35 RSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGK--LSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            RS+AA  T+MAV DMLGAD+ET GV+DPL   KDD +LF+ R VELKHGRVAMLA  G L     H   P++     L+   + L E P A W QI  A+G  EL+IGKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +G  VQE LTGQ  IEQL  GH+SPFGDG GFF
Sbjct:    4 RSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.450e-55
Identity = 93/181 (51.38%), Postives = 134/181 (74.03%), Query Frame = 0

Query:   34 QRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQ-WHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDG 213
            +RS+ +     AV+ ++GADVET+G +DPLG  K++ +L RRR VELKHGRVAMLAV G +  +  +HPL+DGK+  G+ A+ ++P A WVQIL AI  +EL  G  D E+K PG++  FG ++   P++PV + KLQL+ELK+GRLAM+AI+GE+VQE++TGQT ++QL  G+++PF  G
Sbjct:   25 RRSAVSMKRAAAVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPFTPG 202

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.180e-54
Identity = 113/222 (50.90%), Postives = 143/222 (64.41%), Query Frame = 0

Query:    1 MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGKLSP--GLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 217
            MK    A AL ++ +A AFVAPS+F+G+ +       A    +MAV D++GAD ET G++DPLG+ KD+ SL++ R  ELKHGRVA LA+ G L    +H   P++ G   P   L +L +    A  QI  A+G+VEL + KQD E KAPG+LG FG     YPD      +LQLKELKNGRLA +AI+G  VQEKLTGQ  IEQL +GH SPFGDGQG F
Sbjct:    1 MKTAFAASALAAIGSAAAFVAPSSFAGTALKAAPV--ATGPLRMAVEDLIGADTETGGIWDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPE-KAPGDLG-FGI----YPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLLAGHTSPFGDGQGAF 214

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BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 182 bits (462), Expect = 1.670e-54
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = 0

Query:   34 QRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDG------KLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPF 210
            +R+  +TT KM+V +M+GADVET GVFDPL + +D+ASLFRRRAVELKHGR+AMLA  GY        L D        LS   K L E P+AA  QI+AAI  +EL  G+QDYENKAPG+LG FG S+     +P  F K QL+ELKNGRLAM+ IMG MVQE LTGQ+  EQ+ SG+++PF
Sbjct:   34 RRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPU8_ECTSI	1.190e-135	90.32	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835ZQ88_9STRA	1.560e-86	65.38	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A0G4EVU7_VITBC	2.940e-81	67.42	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
W7TFG9_9STRA	7.340e-81	67.05	Light harvesting complex protein n=2 Tax=Monodopsi...	[more]
A0A835ZAI4_9STRA	2.100e-63	56.16	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
W7U405_9STRA	1.230e-57	58.79	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A835ZIK7_9STRA	1.400e-57	56.38	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A7R9U311_9STRA	4.450e-55	51.38	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A835ZHX7_9STRA	1.180e-54	50.90	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4GDB0_VITBC	1.670e-54	56.83	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 57..191 e-value: 3.6E-29 score: 102.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 43..213 e-value: 3.0E-35 score: 123.7
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..196
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..196
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..217
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.601
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig95	contig	S-dermatodea_contig95:5836..10372 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig95.17526.1	mRNA_S-dermatodea_contig95.17526.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig95 5836..10372 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig95.17526.1 ID=prot_S-dermatodea_contig95.17526.1|Name=mRNA_S-dermatodea_contig95.17526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=218bp
MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDML
GADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH
PLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELG
NFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIE
QLSSGHLSPFGDGQGFF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln