mRNA_S-dermatodea_contig95.17526.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95.17526.1
Unique NamemRNA_S-dermatodea_contig95.17526.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.190e-135
Identity = 196/217 (90.32%), Postives = 207/217 (95.39%), Query Frame = 1 
Query:    1 MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            MKMEIGA+AL +L+  TAFVAPSAF GSQIAR Q++++AT TKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELP AAWVQIL AI +VELT+GKQDYENKAPGELGNFGQ+WNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQL+SGHLSPFGDGQG F
Sbjct:    1 MKMEIGALAL-TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.560e-86
Identity = 136/208 (65.38%), Postives = 169/208 (81.25%), Query Frame = 1 
Query:   28 LCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            L SL+ A AF AP AF G+++A  + SS A  + M+VND+LGADVET GV+DPLG+ KD+A+LFRRR VELKHGR+ MLA  GYL AE +HPLYDGK+  GL A+ ++P A W+QI+AAIG+VELT+GKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IMG MVQE LTGQT + QL+SGH+SPFGDGQG F
Sbjct:    9 LASLAGAAAF-AP-AFMGAKVAAPRVSSKAVVS-MSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPFGDGQGAF 212
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 250 bits (638), Expect = 2.940e-81
Identity = 120/178 (67.42%), Postives = 148/178 (83.15%), Query Frame = 1 
Query:  118 TTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            T  +MAV DM+GADVET GV+DPLG+ KD++SL+R RAVELKHGRVAMLAV GY  AE WHPLYDGK+ PGLKA+ ++P A W+QILA I  +EL+IGKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI G +VQE +TGQT ++QL  GH+SPFGDGQG F
Sbjct:   35 TAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 7.340e-81
Identity = 118/176 (67.05%), Postives = 149/176 (84.66%), Query Frame = 1 
Query:  124 TKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            T+MAVND+LG+DVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G   +E +HPLYDGK+SPG+KA+GELP  AW+QILA IG++ELT+GKQD ENKAPG+LG FG ++NP+ ++P  F++LQLKELKNGRLAML   G ++QE +TGQT  EQ+++ HLSPFGDGQGFF
Sbjct:   31 TRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.100e-63
Identity = 123/219 (56.16%), Postives = 149/219 (68.04%), Query Frame = 1 
Query:   13 IGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG------LKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            +  VA+ SL+   AF  PSAF+G  +AR    + A T +M+V DM+G DVET G+FDPLG+ KD+ASLFRRRAVELKHGR+ MLA  G L     H L D   S        L+ L + P AA +QIL AIG++ELT G QDY NKAPG+LG FG ++ P  D+    ++LQLKELKNGRLAM+ IMG +VQE LT Q  IEQL  GH SPFGDGQGFF
Sbjct:    4 VACVAVASLAGVAAFT-PSAFAGKALARPAARTHAVT-RMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.230e-57
Identity = 107/182 (58.79%), Postives = 132/182 (72.53%), Query Frame = 1 
Query:  121 TTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG-LKALGEL----PFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            + +MAVN+M+G+DVET+GVFDPLG  KD+ASL+R R +ELKHGRVAMLA  G L    +H   +   +P  L AL ++    P A W QI  AIG +ELTIGKQD  N+APG++G FG ++   PD+   F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ  IEQL  GH SPFGDGQG F
Sbjct:   29 SVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.400e-57
Identity = 106/188 (56.38%), Postives = 128/188 (68.09%), Query Frame = 1 
Query:  103 RSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGK--LSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            RS+AA  T+MAV DMLGAD+ET GV+DPL   KDD +LF+ R VELKHGRVAMLA  G L     H   P++     L+   + L E P A W QI  A+G  EL+IGKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +G  VQE LTGQ  IEQL  GH+SPFGDG GFF
Sbjct:    4 RSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.450e-55
Identity = 93/181 (51.38%), Postives = 134/181 (74.03%), Query Frame = 1 
Query:  100 QRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQ-WHPLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDG 639
            +RS+ +     AV+ ++GADVET+G +DPLG  K++ +L RRR VELKHGRVAMLAV G +  +  +HPL+DGK+  G+ A+ ++P A WVQIL AI  +EL  G  D E+K PG++  FG ++   P++PV + KLQL+ELK+GRLAM+AI+GE+VQE++TGQT ++QL  G+++PF  G
Sbjct:   25 RRSAVSMKRAAAVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPFTPG 202
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.180e-54
Identity = 113/222 (50.90%), Postives = 143/222 (64.41%), Query Frame = 1 
Query:    1 MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGKLSP--GLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPFGDGQGFF 651
            MK    A AL ++ +A AFVAPS+F+G+ +       A    +MAV D++GAD ET G++DPLG+ KD+ SL++ R  ELKHGRVA LA+ G L    +H   P++ G   P   L +L +    A  QI  A+G+VEL + KQD E KAPG+LG FG     YPD      +LQLKELKNGRLA +AI+G  VQEKLTGQ  IEQL +GH SPFGDGQG F
Sbjct:    1 MKTAFAASALAAIGSAAAFVAPSSFAGTALKAAPV--ATGPLRMAVEDLIGADTETGGIWDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPE-KAPGDLG-FGI----YPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLLAGHTSPFGDGQGAF 214
[Close]
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 182 bits (462), Expect = 1.670e-54
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:  100 QRSSAATTTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDG------KLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELGNFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLSSGHLSPF 630
            +R+  +TT KM+V +M+GADVET GVFDPL + +D+ASLFRRRAVELKHGR+AMLA  GY        L D        LS   K L E P+AA  QI+AAI  +EL  G+QDYENKAPG+LG FG S+     +P  F K QL+ELKNGRLAM+ IMG MVQE LTGQ+  EQ+ SG+++PF
Sbjct:   34 RRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95.17526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU8_ECTSI1.190e-13590.32Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835ZQ88_9STRA1.560e-8665.38Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A0G4EVU7_VITBC2.940e-8167.42Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TFG9_9STRA7.340e-8167.05Light harvesting complex protein n=2 Tax=Monodopsi... [more]
A0A835ZAI4_9STRA2.100e-6356.16Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA1.230e-5758.79Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A835ZIK7_9STRA1.400e-5756.38Chlorophyll a/b-binding protein domain-containing ... [more]
A0A7R9U311_9STRA4.450e-5551.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZHX7_9STRA1.180e-5450.90Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4GDB0_VITBC1.670e-5456.83Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95contigS-dermatodea_contig95:5836..10372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.8
Seed ortholog evalue8.3e-106
Seed eggNOG ortholog2880.D7FPU8
KEGG koko:K08907
KEGG Pathwayko00196,map00196
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S44M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001740.1
Exons5
Model size654
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95.17526.1prot_S-dermatodea_contig95.17526.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95 5836..10372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.195934-CDS-S-dermatodea_contig95:5835..59471622925412.195934-CDS-S-dermatodea_contig95:5835..5947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 5836..5947 +
1694079916.1292334-CDS-S-dermatodea_contig95:5835..59471694079916.1292334-CDS-S-dermatodea_contig95:5835..5947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 5836..5947 +
1622925412.2116098-CDS-S-dermatodea_contig95:6688..68811622925412.2116098-CDS-S-dermatodea_contig95:6688..6881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 6689..6881 +
1694079916.143429-CDS-S-dermatodea_contig95:6688..68811694079916.143429-CDS-S-dermatodea_contig95:6688..6881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 6689..6881 +
1622925412.222707-CDS-S-dermatodea_contig95:8343..84701622925412.222707-CDS-S-dermatodea_contig95:8343..8470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 8344..8470 +
1694079916.1532326-CDS-S-dermatodea_contig95:8343..84701694079916.1532326-CDS-S-dermatodea_contig95:8343..8470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 8344..8470 +
1622925412.2327304-CDS-S-dermatodea_contig95:9278..94021622925412.2327304-CDS-S-dermatodea_contig95:9278..9402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 9279..9402 +
1694079916.1649-CDS-S-dermatodea_contig95:9278..94021694079916.1649-CDS-S-dermatodea_contig95:9278..9402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 9279..9402 +
1622925412.244482-CDS-S-dermatodea_contig95:10274..103721622925412.244482-CDS-S-dermatodea_contig95:10274..10372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 10275..10372 +
1694079916.1801395-CDS-S-dermatodea_contig95:10274..103721694079916.1801395-CDS-S-dermatodea_contig95:10274..10372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 10275..10372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95.17526.1

>prot_S-dermatodea_contig95.17526.1 ID=prot_S-dermatodea_contig95.17526.1|Name=mRNA_S-dermatodea_contig95.17526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=218bp
MKMEIGAVALCSLSAATAFVAPSAFSGSQIARVQRSSAATTTKMAVNDML
GADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH
PLYDGKLSPGLKALGELPFAAWVQILAAIGIVELTIGKQDYENKAPGELG
NFGQSWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIE
QLSSGHLSPFGDGQGFF*
back to top

mRNA from alignment at S-dermatodea_contig95:5836..10372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95.17526.1 ID=mRNA_S-dermatodea_contig95.17526.1|Name=mRNA_S-dermatodea_contig95.17526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4537bp|location=Sequence derived from alignment at S-dermatodea_contig95:5836..10372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGATGGAGATCGGTGCCGTAGCTCTGTGCTCTCTGAGCGCCGCGAC
CGCGTTCGTGGCGCCCTCTGCCTTTTCGGGATCGCAGATCGCACGGGTCC
AGCGCTCGTCTGGTGAGTTGCGAGGGTCCGGTGCTTGTCATCTCTGCTCT
CGTGTTTTGCTTCGCATGCGTGTTGTTGTGTTTCGATCGGACGGCTTCCT
AGTACGAGATCTGGTGGGAGTCGGTGGGGACAGGCCAGCTGCGATGAGGA
CGAGCCGTTGCTTCCTTGAATGTTGTGCAGCTTGTGTGAGCGTGAGGGCG
ATATGAAAGTGTGACACGTCCGTCGGCCGAGTTGCCCAGCGACTGCAGCG
CGTCGTACCAGCGCTGAGTTGCTACACCAGTGGGTCGAGGGGTGAAGCAT
GGAAGCCACATGTTGTCGACCACCGCACCGCGCGACTCATGGCCTTGACC
ACACAGCCAGTCTTGCCCTGGGTACGACAGGGCCGTGCGTCTATCGTGTT
TGCCGTATTGAAATAGTTTGCATGAGCCAGCCAGGCTTTATATGTGTGAC
TTCGGCGCCACCCTTCCCCGTTCGACCATTGCCCCAAGCACCTCTTGAAC
GCGCAACGCAGCACTACTACTGTACTACTGCTGTTATATGCACACTTTGT
ATCAATACTTGTGCCGTACAATAGCAGCTGTTTTGTGGAAAAAACGCCCA
GATTATGTAATACGATTCATACCCTCTGGCACATGCTGTCTCTCTCTATG
CACCTTAGCACCTACTGTATTATGCTCTTCTCAAGTCGTCTATGCACCTC
TCAAGTCAGCCAACTCCTTTCTGCACCACGCATGTTGCTGACGCCCGTCC
CAGCAGCCACCACCACGAAGATGGCGGTAAACGATATGCTCGGCGCGGAT
GTCGAAACGGACGGTGTGTTTGACCCCCTCGGCTACGGCAAGGATGACGC
ATCGCTCTTCCGCCGCCGCGCGGTGGAGCTCAAGCACGGACGCGTCGCTA
TGTTGGCCGTGACCGGCTACCTCTTTGCGGAGCAGTGGCACCCTCTGTGA
GTAAAGTCTCCGCTGCCGGGCTGCTGTATGGTTTTGTTGGACGAACGTGG
CCTCGAGAGCCCCCTGTTCATGTTTTACTAAAGTACACTGGAGATGGAAC
TGCTGGCGTGTTCGGCCCTACAACAACGCCGATGGAAGCCGTGACACATG
AATGTGTTGCTTGATGCAACCATATGCATTGATAGGCCCGGCTGTTGCTT
GTCCCGCCTCTTCGCCTCCCAAGTGTCACAGCGGAAGAGCTTGGTCGACT
TGAGGAAGTCTGACTTGCTTGATCTAAACTCAACGTGTCAGCCGCCAATC
CGCGATTTGCTCGTTATCGTTTCGTTCTTTCGCGTCATATTTTGGCCCTG
TTTTCGTCCATTGAAACGTCAGATAGAGGATGTGACAAGCATATGACGGG
CATGCAGCTATAGCTAGCATGCACAAGTGTCACCCTACGCAGTGTAGTGT
GGGCAGACCTGATATTTTCACGCGGCTGCTACCCGCTCATGTTCATGTTG
TCACCAGCCGATCGATGCGGTGCACCAACCTATATTAGCGTGTGAGGCTC
GTACGCGGTGCATATATGGTCGAACCTGGTACGTATATGCCCTTGCGAAC
TTTGCTCGATTTATAGTGCGTGAGTCAGCATCAAGTGCACATGTTATCTA
ATTGAAGCGAAGGGGCGCACGATTCCATTACACTGATAGCTGCCAGCAGC
GCGAAAAAAGGGTCTCGCACTTGCCTGTAGAGAACTTCGTGCCCAGCAGT
AGCTGTCTGGTAAAATAATAATGGTTTACTGTCCTAGGTTTTGAGTGCCT
AGCTCCTCTCGTGCAAAACCGGAGGTTGCTTAAGAACGCTACCGGCGAGG
CCCAAGCATTTCAAATTGCCGCCAGTACGGGTCGAGGGACGCACGATTTT
GTTCTGATAAGGTGCCAACGACAACATCGAAGCACATGAGCCCATTCCGA
GTACGGCAGCGCTTTTCGAATTACGCACGCGGAAGGTCCTCCCTGCCTAC
CACTGTTTGACCTAGGGAACATTCACCTGCCGCATTACACCTTGTGATCG
AGGCTATTGGCCATTGTGGGGCGTTGTATGTGAGGTTACTGGGAGGCGTT
GTATGATAGGTATCATAGTACTTTTACTGAAGCTCATTAAAGCCATTCGA
GGTCAAGTCCAGCGAGCCTGGAGCATTTGCATTTGACGGGCGAGGAACTC
ATGCGCATGCATATTCAACACGAACCTCTTTTAGACTAGTTAACCCTCAT
TTTTTTTGCACGGCGTCGAAATCACGCCCTACCTACGCACTCCCACCGTT
ATCGTATCCATACAAGTCACTGCACATGAAGAGCTCTTTTTTTTCACCAC
ATGAACATAACACCGAATGTGTACAACCCAAAACTCATATGACTTATGTC
TGCATACGCTCACCTGTTGGTCTCTCGTCCGTGTGCCGTTGGTTCGGTGT
GAACGCAGCTACGACGGCAAGCTGTCGCCGGGACTCAAGGCCCTGGGGGA
GCTCCCGTTCGCCGCGTGGGTGCAGATTTTGGCAGCGATCGGCATCGTTG
AGCTGACGATCGGAAAGCAGGACTACGAGAACAAGGTGAGCTTAATATGA
ATAGTGTATGGTTTTGAATGTGCCTAAACGTCGATTTATTTTCAAAGGAC
GCTCGTCGGATTCTCGAGCACCTCTCATTATTATAGTTGCCAAAGGATTA
TCAGCGCCCCGCCGGGGGAAATTGTGAATGAACAGGAAGCAAACCATTTG
ACATGTTCCAAACCTGAGTCCACCAATATTATTGGCTTTTCACACAGTAC
TAAAAATACACCCTCCTCTGACTCTTAGCAGGATGCAGCTCACCCTTCAT
GCGACTCGCCGAACACATCACGGCGCTCCGCGCTTGGTGAATGCGNNNNN
NNNNNTCCCGGCTTTGTAGGGATGCGAGGTCTATGGTCTAACGACTACGG
CATGCACGATCAATGAGTACACCCCCCTCCTCTGCCTCGAAAAACGCGAG
AGGCGAGAAATCCAAATCTATATACCTGCTCGGCGAACGGCGGAAGGGCT
GAAGGGCTGAACCCAAGTCACGATGATGATCTATGGGAAGAGATGGGATG
ATCCCTCGTCACCGCAGACGGGATTTTGATATGGCCGATCTATGGTGCTT
GATTCACACATACGCACCCGAGCACCCACTAAGTCGTGGGTATTGAAAAA
TGCCGTGTGTACGCGTGGCGCTGGCAAGACACGGGTTTGTCGGCAAACCT
ACTCCTCTGCTGATGCGGTCCCATGTTTGTTATTTCGAGCTTGCCAGTAG
TTGTATTGCAGACTCCTCGAACTTGCGCCTAAGAGCGATTTCCAACAAAT
TGTCATGCTTGACACGATTTGTGGGCGGCGTTTGTTGTTACAGGCGCCGG
GGGAGTTGGGCAACTTCGGGCAGTCATGGAACCCCTACCCCGACAACCCG
GTTGCGTTCTCCAAGCTTCAGCTTAAGGAGCTGAAGAACGGCCGCCTTGC
AATGCTGGCAATCATGGGTGAGTCCGCGTCGCAAATGGTCTTGTTTTTGC
GCTTGAACTTGTGGGGTACGTTGGCGCATCCATAGCGTGTTCCGCATATC
ATACGGATTAGCAACCCTCGTCGGTAACAAGTGCAAAGTCTTACTACAAG
TATGGATAGGCTGGGTGTCATTGATATCTTCGCAAGAATTTACCTTGCCG
ACTGGGTAGCAGTTGTGCTGTGATGCTCCTGCGCGGTATTCGCAGAGAGC
AAGAGCTTTGGCGATATCACCCTTTCAACGGCTTACGTGCACATTGATGG
CAACTCCCGCGCCTGTCTGGTCCATGTGGATTTATAAAGTGTAGGGGTTT
CACGGCAGCAAGAACCGTGGAAGTGTAGTGCGGTTTCATAATCTGCACTT
GAGGTGGCGCCTTTGTTTTTTGCAAAGTTTTTACACGTTCGAATGGGGAC
AAACCATCTTGGGAACGTTTGGATGGCACGCGAGGGTGTTGCGAGCCGCC
AGTAAAGTATCATGTTGGGAGGCGTTATTTTTTTTGCAGACGGGTTACTA
ACCATTGCGGTTGTCGACTATGCGTTTCACTTCGTTTTTCCATTTGGCGC
CACCAGAGCCGCGCGAAGTCATTGAGATGTGCTATTCATAAATAATAAAT
AGTTGTCTTGCCCTAGTCGCGCTGAACCCCTTGATCGAGCCCAGGTCGTG
TCGCCCGTGGCCCCCGCCATGGATGCATGATCGCTCAACACTGGAATGTG
TACCCCTCCACGCAGCTTTTCCGAAGCGTCGCGGATGAACTCTTGGAACA
TATTCGTCGCGTCCCGTTTTCACCACGACCACCACCGCATCTCGCTGTCT
TGCTTCGGATACCCAACTTCCGGCGATCTCTCTCCTCAGGCGAGATGGTG
CAGGAGAAGCTCACCGGCCAGACTGCGATCGAACAGCTCTCCTCCGGGCA
CCTCAGCCCGTTCGGCGACGGACAGGGGTTCTTCTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig95:5836..10372+

>mRNA_S-dermatodea_contig95.17526.1 ID=mRNA_S-dermatodea_contig95.17526.1|Name=mRNA_S-dermatodea_contig95.17526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at S-dermatodea_contig95:5836..10372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGATGGAGATCGGTGCCGTAGCTCTGTGCTCTCTGAGCGCCGCGAC
CGCGTTCGTGGCGCCCTCTGCCTTTTCGGGATCGCAGATCGCACGGGTCC
AGCGCTCGTCTGATGAAGATGGAGATCGGTGCCGTAGCTCTGTGCTCTCT
GAGCGCCGCGACCGCGTTCGTGGCGCCCTCTGCCTTTTCGGGATCGCAGA
TCGCACGGGTCCAGCGCTCGTCTGCAGCCACCACCACGAAGATGGCGGTA
AACGATATGCTCGGCGCGGATGTCGAAACGGACGGTGTGTTTGACCCCCT
CGGCTACGGCAAGGATGACGCATCGCTCTTCCGCCGCCGCGCGGTGGAGC
TCAAGCACGGACGCGTCGCTATGTTGGCCGTGACCGGCTACCTCTTTGCG
GAGCAGTGGCACCCTCTCAGCCACCACCACGAAGATGGCGGTAAACGATA
TGCTCGGCGCGGATGTCGAAACGGACGGTGTGTTTGACCCCCTCGGCTAC
GGCAAGGATGACGCATCGCTCTTCCGCCGCCGCGCGGTGGAGCTCAAGCA
CGGACGCGTCGCTATGTTGGCCGTGACCGGCTACCTCTTTGCGGAGCAGT
GGCACCCTCTCTACGACGGCAAGCTGTCGCCGGGACTCAAGGCCCTGGGG
GAGCTCCCGTTCGCCGCGTGGGTGCAGATTTTGGCAGCGATCGGCATCGT
TGAGCTGACGATCGGAAAGCAGGACTACGAGAACAAGCTACGACGGCAAG
CTGTCGCCGGGACTCAAGGCCCTGGGGGAGCTCCCGTTCGCCGCGTGGGT
GCAGATTTTGGCAGCGATCGGCATCGTTGAGCTGACGATCGGAAAGCAGG
ACTACGAGAACAAGGCGCCGGGGGAGTTGGGCAACTTCGGGCAGTCATGG
AACCCCTACCCCGACAACCCGGTTGCGTTCTCCAAGCTTCAGCTTAAGGA
GCTGAAGAACGGCCGCCTTGCAATGCTGGCAATCATGGGCGCCGGGGGAG
TTGGGCAACTTCGGGCAGTCATGGAACCCCTACCCCGACAACCCGGTTGC
GTTCTCCAAGCTTCAGCTTAAGGAGCTGAAGAACGGCCGCCTTGCAATGC
TGGCAATCATGGGCGAGATGGTGCAGGAGAAGCTCACCGGCCAGACTGCG
ATCGAACAGCTCTCCTCCGGGCACCTCAGCCCGTTCGGCGACGGACAGGG
GTTCTTCTAGGCGAGATGGTGCAGGAGAAGCTCACCGGCCAGACTGCGAT
CGAACAGCTCTCCTCCGGGCACCTCAGCCCGTTCGGCGACGGACAGGGGT
TCTTCTAG
back to top