mRNA_S-dermatodea_contig95.17525.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95.17525.1
Unique NamemRNA_S-dermatodea_contig95.17525.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 1.740e-162
Identity = 235/273 (86.08%), Postives = 251/273 (91.94%), Query Frame = 1
Query:    1 MKSAVMAVACASGASAFVAPSLVKTARVA--APKTTMMSEAAGSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWAT 813
            MKSAVMA AC S ASAFVAPSLV + RVA  APKTTMM+E  GSWWTPSDG+KS ALPWAD P+IGDG+MVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLA VGMVAPEL+QHPVGFSGF+FAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLT KYLYEDDLT LELKNK  GK  +LAGAAKIAPVT +K +VF DTV+PGDLGFDPLGLAANG+NPDYALAELKHARLAM+GFLGMAVQQ+VD NGGVLEQF+NWA+
Sbjct:    1 MKSAVMAAACVSSASAFVAPSLVSS-RVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.500e-83
Identity = 148/295 (50.17%), Postives = 186/295 (63.05%), Query Frame = 1
Query:    1 MKSAVMAVACASGASAFVAPSLV------------KTARVAAP-----KTTMMSEAAGSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVF--------TDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
            MK+A +A+    G +A+ APS+V            K+A+ A P     +T     AAG+W+   D + S +LPW   PVIGDG+M+GD GFDPL+L+    D+ WLR AELKHGR+CMLA VG+V PEL+QHPVGF GF F  EFTQMNA AAL +VP+ GLAQIV+ C LIE+A+F  N  S + YED L+ LE    +  +  FL G AK        G           +D    GDLGFDPLGLAANGV  DYALAE+KHARLAM+G LGM + Q  + + GVL+Q L+WA
Sbjct:    1 MKAAAVALVACGGVAAYQAPSMVFGKKSGGAAAPAKSAKAAGPPAFLRETEPGQGAAGAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNA--GDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWA 292          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.380e-76
Identity = 128/223 (57.40%), Postives = 157/223 (70.40%), Query Frame = 1
Query:  136 PSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK--IAPVTADKGEVFT--DTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLE 792
            P DG  S ALPW+D PVIGDG + GD GFDP NL++    L WLR AELKHGR+CMLA VG+VAPEL QHP+GF G  FAPEFT+MNAF AL++ P LGLAQI++ C L+E+ +F       + Y+D LT +E ++  AG  +FL G AK  +A  TA K +  T  D    GD+GFDPLG A NGVNPDYALAELKH R+AM+G LGM +QQS   + G+LE
Sbjct:   62 PVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.600e-73
Identity = 123/238 (51.68%), Postives = 158/238 (66.39%), Query Frame = 1
Query:  121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK------IAPV--TADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
            G W+   D + S ALPW   P IGDG++VGD GFDP  L+    D+ WLR AELKHGR+ MLAT+GMV PEL+Q P GF GF FAPEF+++NA  ALS+VP LGLAQI++  S +EVA+F+     ++ +ED+LT LE K    G+   L+GAAK      + P     D G    +  VPGDLGFDP+G   NG+NPDYALAE+KHARLAM+G  GM +Q+ +   G +L Q + WA
Sbjct:   62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA)

HSP 1 Score: 232 bits (592), Expect = 2.860e-72
Identity = 118/228 (51.75%), Postives = 154/228 (67.54%), Query Frame = 1
Query:  121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK--IAPVTADKGEVF--TDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLE 792
            G W   +    SQALPW+D PVIGDGN+ GD GFDP  L+     L WLR AE+KHGR+CMLA VG++APEL+Q+PVG+ G  F P F +MNAF AL +VP LGLAQIV++  L+E+ S   N    + ++D LT++E  +  +G  +FL G AK  +A  T  K E    T+ V PGDLGFDPLG A +G+ P++A AE+KHARLAM+G LGM +QQ+     G+LE
Sbjct:   56 GQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC)

HSP 1 Score: 218 bits (556), Expect = 9.810e-67
Identity = 116/241 (48.13%), Postives = 158/241 (65.56%), Query Frame = 1
Query:  121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYED-------DLTALELKNKKAGKMQFLAGAA--KIAPVTADKGEVFTDTV--VPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
            G W+   D + S ALPW   P IGDGN+VGD GFDP  L+    ++ WLR AELKHGR+CMLA+VG++APEL+Q P GF G DF P F++++ + AL+++P  G+AQI+I  +LIE+       T+KYLY         DLT  E    + G  +FLAG A  ++  +  ++ E   D V  VPGDLG+DPLGLA NG+  D+ALAE+KHARLAM+G LGM +Q  ++ N  +L+Q + WA
Sbjct:   62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELT------TAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC)

HSP 1 Score: 192 bits (487), Expect = 1.270e-56
Identity = 109/231 (47.19%), Postives = 146/231 (63.20%), Query Frame = 1
Query:  154 SQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYED-------DLTALELKNKKAGKMQFLAGAAKIA------PVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNW 807
            S ALPW   P IGDG +VGD GFDPL L+   AD+ +LR AELKHGR+CMLA VG++APEL+Q P GF G +F P F++MN F AL ++P  GL QI+I  +LIE+       T+K+L++        D++  E    + G  +FLAG+A+         V  +K  +F+   VPGDLGFDPLGLA  G+  D+ALAE+KH RLAM+  LGM +Q     + G+LE   +W
Sbjct:   53 SLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN------TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSR--VPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE)

HSP 1 Score: 160 bits (404), Expect = 4.900e-44
Identity = 98/234 (41.88%), Postives = 125/234 (53.42%), Query Frame = 1
Query:  121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTV----VPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
            G+W+   D   S++ PW     I DG + GD GFDPL L+    D  W+RTAELKHGRI MLA VG++ PELI  P GF G +F P F  +    AL   P LG+ QI ++ +LIE        T KY+          KN     M++L           DKG  F+D       PG +GFDP G A NG+  D+A AE+KHARLAMVG  GM +Q  +  +  +LEQ   WA
Sbjct:   84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQ------TLKYV----------KNP----MEYLQPYM-------DKGIKFSDEYFEKRTPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWA 289          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT)

HSP 1 Score: 132 bits (332), Expect = 5.980e-34
Identity = 92/220 (41.82%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  154 SQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEF--TQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNW 807
            S ++P+A  P   DG ++GD GFDPL L+N   D+ WLR AE+KHGR+ MLA  G +  E  + P   S     PE   T      ALS+ P LGLAQIV L  LIE+ + +  L +   YED        N KA      AG+                   PGDLG+DPLGL+A G+N DYA+AELKH RLAM+G  GM +  S+ S   + EQ  +W
Sbjct:   48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGFLVQEGYRLPGPASN----PELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDS------PNLKAP-----AGSGS-----------------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGM-LAGSLVSGKSISEQTYDW 233          
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A8J5XNK9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNK9_DIALT)

HSP 1 Score: 120 bits (302), Expect = 6.460e-30
Identity = 77/208 (37.02%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  154 SQALPWADTPVIGDGNMVGDAGFDPLNLAN--GPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVD 771
            S A+P+   P   +G ++ D GFDP    N   P  +   R AELKHGR+CMLA +G VA ELI      + +  AP F ++N   A+++VP LG+ QI++LC +IE      N T  Y               AG+                         +PGD+GFDPLGL+A G+  D+A+AE+KH RLAM+ FL   VQ  V 
Sbjct:   35 SAAIPFVAKPKNLNGELLCDIGFDPAGFTNKASPEKIAKFREAELKHGRVCMLAVLGFVAQELI------APYQAAP-FNEVNPINAIAAVPALGILQIIVLCGIIE------NRTQGY---------------AGR-------------------------IPGDIGFDPLGLSAGGIKEDWAIAEIKHGRLAMIAFLAFQVQIKVS 189          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU7_ECTSI1.740e-16286.08Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z6C4_9STRA1.500e-8350.17Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A7S1XTT1_9STRA1.380e-7657.40Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TZB5_9STRA1.600e-7351.68Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U4N3_9STRA2.860e-7251.75Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4G8I9_VITBC9.810e-6748.13Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FH94_VITBC1.270e-5647.19Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HNT2_9ALVE4.900e-4441.88Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J6CE65_DIALT5.980e-3441.82Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J5XNK9_DIALT6.460e-3037.02Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95contigS-dermatodea_contig95:2250..5440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue6.4e-23
Seed eggNOG ortholog2880.D8LKC5
Preferred nameLHCA1
KEGG koko:K08907
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0019904,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs28MEX@1,2QTYF@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001730.1
Exons2
Model size816
Cds size816
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.148874-CDS-S-dermatodea_contig95:2249..29561622925412.148874-CDS-S-dermatodea_contig95:2249..2956Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 2250..2956 -
1694079916.0935822-CDS-S-dermatodea_contig95:2249..29561694079916.0935822-CDS-S-dermatodea_contig95:2249..2956Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 2250..2956 -
1622925412.16037-CDS-S-dermatodea_contig95:5331..54401622925412.16037-CDS-S-dermatodea_contig95:5331..5440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 5332..5440 -
1694079916.1072555-CDS-S-dermatodea_contig95:5331..54401694079916.1072555-CDS-S-dermatodea_contig95:5331..5440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95 5332..5440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95.17525.1prot_S-dermatodea_contig95.17525.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95 2250..5440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95.17525.1

>prot_S-dermatodea_contig95.17525.1 ID=prot_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp
MKSAVMAVACASGASAFVAPSLVKTARVAAPKTTMMSEAAGSWWTPSDGS
KSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRIC
MLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVI
LCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVT
ADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGM
AVQQSVDSNGGVLEQFLNWAT*
back to top

mRNA from alignment at S-dermatodea_contig95:2250..5440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95.17525.1 ID=mRNA_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3191bp|location=Sequence derived from alignment at S-dermatodea_contig95:2250..5440- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTCCGCTGTTATGGCTGTCGCGTGCGCCTCGGGTGCCTCTGCTTT CGTGGCGCCGTCGTTGGTCAAGACCGCGCGCGTGGCCGCCCCGAAGACCA CCATGATGTGTGAGTCCCCACTACCCTACAAGTACTGTACAACGGACAAA GGGACATGTACGCACTCTCTCTTTGTTGGCCCGGAGTGCATGCAGCCGTC CTCGGCTAGCTTCGACTTCTGGCGAGTCTGGGGTGTGACACTCCACAGTA TTTGCTATGCACTGTACGGCGTGGGCGCTGCTGGTTTCCCTTCGTGCATG CTGCAGAGGTTTTGTCTCTGTTGTCTCTGTTGTATCCCGCCCATATTGGC GCAATCTGACTCGGTCGGTCTGCGTCGGTGCTTTTCTCGGTGGAAGCTCG AGCCTGTAGAATGGCTGTAGAATGCCCCCTCATGCTCACGAGACACGAGA CGGGAAAGGTGGCTTCTATCGAGACGCCGTGATCATGCTTGTGTCCCAGT CGGCCCTGCCTAAGGTGCCCGGTGCTCGTTTGAGTGACGCTGCGGTTTGT GGTTCTCCCTTGATACCATGCGCGAAATGTAGCTGGAGTGTAATGGTTTA GCTTTTCTTACTATTAATAAGAGTTAGTACAAATAGTGGAGGGGCCTGCC TGCGTGTGCGTGAGTTGGGCTGTGGATAGGGCTGCGCTCAAGGCGCTGAT ATTCATCGTAGTATGGTTCATGTTTCATACTGGCTGTAGTCCAAACCTAG AAGGAGCGCGCAATGAAGCGAGTGCATACCGCAGCCTATGAACTTAACAG CGAATGATGGCCCGCATATGTGTTACACGATAGACTTGAGTTTTACTGCC GTGTCTGCTCATCTCTACCTACTGCGCGGCTGCTATACTACAATGCTGTA TGGGCAACCCTACAACCAGCTGGCTACAACCCGGTCATAACCATGAATAG GTTTGTGACGTACCTGTACAGCAGTCCTGAAACGAATGCATGTACCTTAG TCTATTATAGCTCATCGCAAACCGCAAAGAGCGTGTAGGTTCAACCACCC CCTTCTGGACAGAGGAGCTTTGCAAACGGGGAAACCACGGCTCTATGCCG GAAGCCGGTATCGTACTATCCAACACGTAGCAAAAAAGGTAGACGGCTCC TACAAAGACCTTGCACCCTCCTTACCTTCCTGTGTGATGTCTGACGTCAA CTGACCCCCCTCCGGCTTGAACATGCCATGTTGCCAATTAAATTATAAAT TATACGTGTATACTTATCCTTATCCAGCAGCAATCCCTCACCCTATTATT TATAGGTTTCGGTCGAGGTCATAATCATGTACAACGAACGCTGTTTGGTG ATGCGATTAATCACGCACGTCCACACCCCGAACTTTCGAACCAGCATTGT AGTAGGCCTACGCCGTTCCGGCTGCATATTTCTCTAAACAGAAGTATCTG AACCCTATTGGTCCTTCCAGTTTTAATTAGTATTGATAATTAAGAGGGCT CTCAGAAACGACCAAAAACTCTCTCGCTGCCAGTCGACAGCTACAGCCCC GTTTTCCTTACGCTCCGGTCTCTCTCATTCCTGCGTCAGAACCTATGGAG TTCCCCAGGGCCCCGGTTCAAGCACGCCTTATTACGTGTTAACAGGCGCT CCAAACAGGGGCTGTAGTACCAAAAGGGTTAAACACAGTTGTGCACCCAC GTCTCCGTAATACAACTATTAATACTATGAAAGTAACACTCGTACTGACT GTTTATGTGACTCTGTATGTCATACGTTTGTTGTCGATTGTTTGTTGTGG TTTCAAACTATTTACGGAGGTAACACACTAATCAGGAGCAAATATCATGG CTACATACACCCAACTACTATTCCGACCGTGAATACAACACCCAAACATG AAAAAAATTATGAAAAATAAATAGACGCACGAGATGCGGCCCACATCGAC CTTGGAGTATCGATAATTTAGCCTATTTTGATTTTTATAGGGTAAGACTT GTGGCAAATTTGGCCCTGTTAACTATAGGTCCCCCGTAAAATATTAACAA GTGCCTGCCTGACGTGGTACCTCGTTGTTGCCGTGTTCCAGAAGGACCTC GATTGGTCTACTTGTGTATGTAAAGGTCGAACGACCGCGATTGTAGCATG TACTGCAATACTAGTACTTGGAGTGCTGTTGAGAGTCGAGTCGAGATGAC GCCGCAAAGACGCCGTCTGACTGGAGTTCCATATTGCAGTGAGGCCGCAT TTTCCGCTTGCTGCAGGTATTTCTATCTTCAGTCGGCGATGCTGTCGAGA ACTTGTACAAGCGCATATGATTCGCCTGCTCATTTGGTCGTGTAGTCGAC TACCCTGCAAACTTAACCCAAAATAGTGCCGAACACTGAACTTGCGGCAT GCTCCACCCTACTTACCCATGATCCGTTCACCGCCATCGTCGGCCGCTTT TTCACACAAATTGGGTTCGGTTCGGGAAATGCAGCTGAAGCAGCAGGATC ATGGTGGACCCCCTCGGACGGCTCCAAGTCCCAGGCTCTCCCGTGGGCAG ACACCCCGGTGATTGGGGACGGAAACATGGTTGGGGACGCCGGTTTTGAC CCCCTGAACTTGGCAAACGGGCCCGCCGACCTGGTGTGGCTGCGGACAGC GGAGCTCAAGCACGGGCGAATCTGCATGCTCGCGACCGTGGGCATGGTAG CCCCCGAGCTCATCCAGCACCCGGTCGGATTCTCCGGGTTCGACTTCGCA CCCGAGTTCACGCAAATGAACGCGTTCGCGGCGCTGTCGTCGGTGCCCCG GCTGGGCCTCGCGCAGATCGTCATCTTGTGCTCGCTCATCGAAGTGGCGT CCTTCACGGGAAACTTGACCTCCAAGTACCTGTACGAGGATGACTTGACG GCGCTCGAGCTGAAGAACAAGAAGGCGGGCAAGATGCAGTTCCTCGCGGG CGCTGCTAAGATCGCCCCCGTCACGGCCGACAAGGGCGAGGTGTTCACGG ACACCGTCGTCCCGGGGGACCTCGGCTTCGACCCGCTCGGCCTCGCGGCC AACGGCGTCAACCCCGACTACGCGCTGGCCGAGCTCAAGCACGCCCGTCT CGCAATGGTCGGGTTCCTTGGGATGGCGGTACAGCAGTCGGTCGACTCTA ACGGTGGCGTGCTTGAGCAGTTCCTCAACTGGGCGACCTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig95:2250..5440-

>mRNA_S-dermatodea_contig95.17525.1 ID=mRNA_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig95:2250..5440- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTCCGCTGTTATGGCTGTCGCGTGCGCCTCGGGTGCCTCTGCTTT
CGTGGCGCCGTCGTTGGTCAAGACCGCGCGCGTGGCCGCCCCGAAGACCA
CCATGATGTATGAAGTCCGCTGTTATGGCTGTCGCGTGCGCCTCGGGTGC
CTCTGCTTTCGTGGCGCCGTCGTTGGTCAAGACCGCGCGCGTGGCCGCCC
CGAAGACCACCATGATGTCTGAAGCAGCAGGATCATGGTGGACCCCCTCG
GACGGCTCCAAGTCCCAGGCTCTCCCGTGGGCAGACACCCCGGTGATTGG
GGACGGAAACATGGTTGGGGACGCCGGTTTTGACCCCCTGAACTTGGCAA
ACGGGCCCGCCGACCTGGTGTGGCTGCGGACAGCGGAGCTCAAGCACGGG
CGAATCTGCATGCTCGCGACCGTGGGCATGGTAGCCCCCGAGCTCATCCA
GCACCCGGTCGGATTCTCCGGGTTCGACTTCGCACCCGAGTTCACGCAAA
TGAACGCGTTCGCGGCGCTGTCGTCGGTGCCCCGGCTGGGCCTCGCGCAG
ATCGTCATCTTGTGCTCGCTCATCGAAGTGGCGTCCTTCACGGGAAACTT
GACCTCCAAGTACCTGTACGAGGATGACTTGACGGCGCTCGAGCTGAAGA
ACAAGAAGGCGGGCAAGATGCAGTTCCTCGCGGGCGCTGCTAAGATCGCC
CCCGTCACGGCCGACAAGGGCGAGGTGTTCACGGACACCGTCGTCCCGGG
GGACCTCGGCTTCGACCCGCTCGGCCTCGCGGCCAACGGCGTCAACCCCG
ACTACGCGCTGGCCGAGCTCAAGCACGCCCGTCTCGCAATGGTCGGGTTC
CTTGGGATGGCGGTACAGCAGTCGGTCGACTCTAACGGTGGCGTGCTTGA
GCAGTTCCTCAACTGGGCGACCTAACTGAAGCAGCAGGATCATGGTGGAC
CCCCTCGGACGGCTCCAAGTCCCAGGCTCTCCCGTGGGCAGACACCCCGG
TGATTGGGGACGGAAACATGGTTGGGGACGCCGGTTTTGACCCCCTGAAC
TTGGCAAACGGGCCCGCCGACCTGGTGTGGCTGCGGACAGCGGAGCTCAA
GCACGGGCGAATCTGCATGCTCGCGACCGTGGGCATGGTAGCCCCCGAGC
TCATCCAGCACCCGGTCGGATTCTCCGGGTTCGACTTCGCACCCGAGTTC
ACGCAAATGAACGCGTTCGCGGCGCTGTCGTCGGTGCCCCGGCTGGGCCT
CGCGCAGATCGTCATCTTGTGCTCGCTCATCGAAGTGGCGTCCTTCACGG
GAAACTTGACCTCCAAGTACCTGTACGAGGATGACTTGACGGCGCTCGAG
CTGAAGAACAAGAAGGCGGGCAAGATGCAGTTCCTCGCGGGCGCTGCTAA
GATCGCCCCCGTCACGGCCGACAAGGGCGAGGTGTTCACGGACACCGTCG
TCCCGGGGGACCTCGGCTTCGACCCGCTCGGCCTCGCGGCCAACGGCGTC
AACCCCGACTACGCGCTGGCCGAGCTCAAGCACGCCCGTCTCGCAATGGT
CGGGTTCCTTGGGATGGCGGTACAGCAGTCGGTCGACTCTAACGGTGGCG
TGCTTGAGCAGTTCCTCAACTGGGCGACCTAA
back to top