mRNA_S-dermatodea_contig9488.17519.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9488.17519.1
Unique NamemRNA_S-dermatodea_contig9488.17519.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9488.17519.1 vs. uniprot
Match: D8LQ49_ECTSI (HPP family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ49_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 8.110e-79
Identity = 138/225 (61.33%), Postives = 165/225 (73.33%), Query Frame = 1 
Query:    1 RRKAPIAPAVRYMMEVMCTDLVACGECFVPDNRAGQTLVRFCGFVPIEVDEAIDGETSRFM---------EGYYGGHEAYGRGVGLPGIAWATARPTVAEISTLTSDASFDSGGKRLSHAGRLFHTALSVPLF-----STDGIMLWGVGDRQLMGVVVIYF--PTAENHAAALIAYASAAAAAASPISALMVHRALFVEGRANRVKRNWRVMRIALRFALPMFIR 627
            RRKAPI PAVRY+ME MC DLVACGECFVP  RA  TLVRFCGF+P EV E +D +T RFM         +G   G EAYGRG+GLPGIAWATAR T+ E+STLTSDASFD GG RL+ AG++F TAL++P++     +  G  LWG   +QLMGVVVIYF  P   + A+AL+ YASA A +A PIS LMVHRA FV GR++R+KRNWRV+ I LRFA+ M +R
Sbjct:  137 RRKAPITPAVRYLMEAMCVDLVACGECFVPHFRARHTLVRFCGFIPPEVREGLDKQTRRFMGGEDVCDAVDGNVTGGEAYGRGIGLPGIAWATARATLVELSTLTSDASFDCGGVRLAQAGKIFQTALAIPIYFATNPTNTGSTLWGQ-QQQLMGVVVIYFRGPKNASSASALVRYASAVAKSAGPISELMVHRARFVVGRSHRIKRNWRVLIIGLRFAMLMLVR 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9488.17519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ49_ECTSI8.110e-7961.33HPP family protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9488contigS-dermatodea_contig9488:260..5288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size630
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.7829506-CDS-S-dermatodea_contig9488:259..5791622925411.7829506-CDS-S-dermatodea_contig9488:259..579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9488 260..579 +
1694079915.8783033-CDS-S-dermatodea_contig9488:259..5791694079915.8783033-CDS-S-dermatodea_contig9488:259..579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9488 260..579 +
1622925411.8007772-CDS-S-dermatodea_contig9488:4978..52881622925411.8007772-CDS-S-dermatodea_contig9488:4978..5288Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9488 4979..5288 +
1694079915.9132793-CDS-S-dermatodea_contig9488:4978..52881694079915.9132793-CDS-S-dermatodea_contig9488:4978..5288Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9488 4979..5288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9488.17519.1prot_S-dermatodea_contig9488.17519.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9488 260..5288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9488.17519.1

>prot_S-dermatodea_contig9488.17519.1 ID=prot_S-dermatodea_contig9488.17519.1|Name=mRNA_S-dermatodea_contig9488.17519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
RRKAPIAPAVRYMMEVMCTDLVACGECFVPDNRAGQTLVRFCGFVPIEVD
EAIDGETSRFMEGYYGGHEAYGRGVGLPGIAWATARPTVAEISTLTSDAS
FDSGGKRLSHAGRLFHTALSVPLFSTDGIMLWGVGDRQLMGVVVIYFPTA
ENHAAALIAYASAAAAAASPISALMVHRALFVEGRANRVKRNWRVMRIAL
RFALPMFIR*
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mRNA from alignment at S-dermatodea_contig9488:260..5288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9488.17519.1 ID=mRNA_S-dermatodea_contig9488.17519.1|Name=mRNA_S-dermatodea_contig9488.17519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5029bp|location=Sequence derived from alignment at S-dermatodea_contig9488:260..5288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGAAAAGCCCCCATCGCGCCCGCCGTTCGATACATGATGGAGGTCAT
GTGCACCGACCTCGTGGCCTGCGGCGAGTGCTTCGTGCCGGACAACCGCG
CGGGGCAGACCCTGGTGCGGTTCTGCGGGTTTGTGCCCATCGAGGTGGAC
GAGGCAATAGATGGCGAGACAAGCCGCTTCATGGAGGGCTACTACGGGGG
CCACGAGGCGTACGGGCGAGGGGTTGGGTTGCCGGGGATTGCCTGGGCGA
CCGCGAGGCCCACCGTCGCCGAGATTTCGACGCTCACTTCGGACGCCTCT
TTCGATTCTGGAGGGAAGAGGTGTGTGCGAAGTTCGCCCATAGGGGAGCG
TAAATTGTGAACCGGCGGCGTTCCGATATGACAAGACCGTGATGTCAGGG
TGGTAGAGTGAGAGGTTCCACACATACTTATACATGTCTATATAGCACAA
GGGCTGCGCCGGAGGGGGCTAAAATGTGATCCCTTCCAAAAATAAGTTAT
TTATTATACTCGATTGTATACAGTGAGTAGATATATCATAATATGGCGAT
GGAAAGCGTGGCTCTTGAAAACAGCTCCAAGATACATCTAAAGTAGTACG
CATGCATACATACTTGACTCCATGGTGTACTCCCTAGCACATGCATGTAC
AGAGCTATTCGCACACACACTCACTCGTCCTACTCACCTCACTCACTGCT
GTAATATCGTCATTATTTACTCACATGCGGGGAGAAAGGTGTCGCAATCA
AAAACTTCAAAACTTCAAACTTCGCTGCGATTGAATCTAACAGTAGACTG
CTGTATGTATGTATTATACTGTGTATGTATCTCAAACCTGCATATTTGTA
GTAAGATCCAGAGCCAGCCAGCCAACCAGGTCTGTTCTGTTTTGTTATTT
TGTTACAATTTTTTACAGCCAACAAGCTGTGGTCTGTGTTGTTATTTGCC
AGATGGAGAGAAAAAAAAACGAAAGGGCCGGCCGCACACAGAAACAATCC
GCCAGGGCTGGCACATTTGAGAACCTGCCAACATAACAGAACCAGAACAG
CTCACACGGCAACCATATGCACAGCACCGCAGCTCACAAGCAGGCACAGC
CAGCAGAGCGCGAGAGGTATTGAGCAAGACAAGGTAATACTCTGGCAGTG
CGTGCCCAACATATCTTTATTAAAAATATATACAACGGCCGTTTGCGGCG
ACCATGCCATTAGTAATACTCTGTATATAGTACCACCACTGCTGCCATCC
AACTATTATACTATTATACTATACGCTGCATTAAAGCTACACATCAAGCC
ACTAGACGCTGCCGGCTGGTAGCTGCAGCAGCACGACCGCACCCACGCTC
AACGCTTGCCGCGTACACTACAGCTCACACCGCGGCAGCAGCGTATCACA
TACTTCGAAGGATTATAATAATGTGGCTTGATCGCGGCGTATACTCTCTC
TTGTATTGTAGTAATATTACTATAGTCGGATCATGGAAAATCAGAGTGTG
GTGTGGTGGTACTACAATTGGCGTAGTCGCCGCAAACGGCCGTTGAAAAT
TAATAAAGATAGTTGGGCACGCACTGTCAGAGCAACATACCTTGTCTTGC
TCAATACCTCTCACGCTCTGCTGGCTGTGCCTGCGTGTGAGCTGTGGTGC
TGTGCATATGTTTACCGTGTGTGCTGTGGTGTTGTGCTTATGCGTGCCGT
GTGTGCTGTGTGTGTGATGTGTGTATCTTTTGTGCTCTTCTCTGTGCTGG
GCGTGCACGTGCTGATGCTGCTGCTGTCTGTGGCTTTGTGTGAGCTGTTG
TACTACTGCGTGTGAGCTGTGGTGCTGCGCGTATGCGTGGGGCTTCGCGT
GTGCGTGGCGTGTGTACCGCTGCTGTCTGTGCCTGCGTGTGAGCTGTGTT
GCTGCTGCTGCTGCTGCTGCTGCTGTCTCTTGTTTGTTACGCTTGTGCTG
TGCCAGGTGCGCTGCTGTTGAATTCAAAAATGGGAAGTTTCTGTGCAAAT
GGCTGTGGTTTTTCTGGTTCTATTATGCTGGCAGGTTCTCAAATTGTGCC
AGCGCTGGCGTATGTACGCCGGCTGAGAAAAAATAGTCAGTACTGACTTG
TACTCCAGGATGTGTCTTTCTAGTTTGTCCTTTCAAAGGGCCATAATCGG
GGCGTTCGGAGGGTGCTATCATACGCACACATCAAAGCTTCCACGCCCGA
GCTCAGGACACTGAAGAGTGGGCCTGGCTTTGGTTCGGAGGCACTCTATC
TCCTATACCTGCTCTCAGAGCCGAAACATTTCTTCGTTGTACGCAGAGAT
AGGTGATATGTACAGTATTTACATGTACAAACATACTGCTGTATGTGTGT
GTCGTTTATGTATGTATAAGTGTGACAATCAATCAATTGCATTCAATCAA
CCAATAGAGGTAAAATGTAGAGCTCTATTCTTGTGCATGTACAAGTACGA
AGCATGTATGTTACATTGTACAGCAGCCTCGCTTTCATACCATCTGTGAA
CAGCCCGCGGGCAGGTCGCTTGGCGAGAACCACGCGCACTCAGCGGCGCC
TCCATGGCCAAGCGCTGGACATGATAGGAGACACCTGTCTCTTCTTCGCA
TTCCCCGGTACTCTCTGTCGCTCCCACGAAATGCGAAATGCAAACGATAA
ATACACACGCGTGGGGGGAGAGTGAAAAAACAAAAAATCGATCTGCTGCA
GATTTGTTTTTGCGATTCACGCCACAACCAACAAACACCAGGACGGAGCT
CGGATATCGCAGGATTCCGAAATACTGGGTTATCCGAGCCCTCAGGACCG
AACAAACAACTTGCTAAATTTCGTTTCTAGGCGGAAAGAGCCTAGTCAAC
GCTAGCGTCGAGTAAGTTATTATTTTATTATAAATTGCCACAGCACGAAG
GCCTGACAGTGCAGTATTCCCAAGTACTGCGTTTTCCGAAACCCCGAGGC
TCGATATATATTATAGATAGGTTTATACATACAGCTGTATAGCGGGAAAC
GTGTCACAATAGTAGTATGTGTTGCACCTCTAGACTATTATGGTGTGCGT
AAAGTATACATACATACTTGAGACTCCATGGTACACTCCCTACTCGTATA
ACTTAAAGCTGTCAGTCTGTAGAGCATGTTTACTCGCACACTCACTACAA
CAACTACAGCCGTGCACCGTGCAGGCACTCACCCTGACTGCTGTATTCAT
CAAGTAATTATTTTACTTTTTCTCACTTCATGCGGGGAGGAGGGTGTGGT
GTCACAGCTGTAGGTATAACCTCCCCAGTAAGTAGTCAAAAACTTCGCTG
AGAAGCAAATCTCAATGTGGGATATTTACTATGATGACACGATCCAGAGC
CAGCCAGCTCTTTGACAATTATTTACAGCCAGCCAGCTGTGTAATTATAT
TTGCTGAACGAAAAAACAAAATTGTGCAAAACAAACTTTCGTTCTACAAA
AAATGTCAAGTACAAGTACTGCTGTTTGATACTATTATACTACATACTAA
AACTATATATATGATACAGCAGCATTAGGTATCATTCGTTTTTCTCATTT
TCTTACAGAACCAACTGTGAACGACCGCGTGCGGGGCGCGTTGGAGACAA
CCGCACACGCAGCGACGCCTCCACGGCCAACCGCTGGACATGAGAGGAGG
CATCTGTCCTTGTCGAATCTCCCGGTGTAGTCTGTCGCTGTCATGAGGCG
CAAACGATACATACACACACGCGGTGGTCGAGAGCGAAAACACAAAAACG
ATGTATATGCTATGCAGATTTATTTTGCACATCACGCCACACACCACACA
CAACACAGAAGGACAGAGCTCGGATATCGCAGGATTCCGAAATACTGGGT
TATCCGAGCCCTCAGGATCGAACAAACAACTTGCGAAAATTCGTTTCTAG
GCGAAAGAGCCTATTAATAGTCAACGCTACTGTAGCTTCGAGTAAGTTTA
TATGTTATTTTAAATTGCCACAGCACGAAGGGCTGACAGCACAGTATTCC
CAAATACTGCGTTTTTCCGAAACCCCGAGGCTCGATATATATTATAGATA
GGTTTATATATATATTTACATATATGCATTTGTCTGGATGTACATGTATT
CTTGTATGATACGCTGTTTTATGTTTCTAGTACACGTACGGAGGGGATGT
GCTCGGAGAACCTTCCACTATTTTTAACGCGGGGACGTAATTTGAAATCT
TACCCCAGCGCGCAGGCTGCTGGCATGTTTTCCGCACAAGGGCGGAATAG
ATCGCTGCTTGCGCTAGGCCGGAATATCGTCCAACCAGGGATGGTACGAC
GAATTGGCCATCGTGTGATCGGGAACCGCGCCGCGTGAAAACGCTGGCTG
TCGGAGCAGCGTAAGGTTGACGGGTTGCCCGCTCGGCAGACGCGTGGCAG
TCGTTTCTCACCACTACGAATTCTAGTGTGCGGCAGGCAGCGCCCATACG
ATTCTTGCTCGTGTTGCGGTAAACGCTGTCGCTGGGCATCCTCCAGAGCA
TTTCACCACACATACGTTTTCGAGTGGTGACGTGAGAACCACTGCTGTGA
CCGCCAGAAAGTGGTATTTTCGTATCATCTGACTGTATGCATCCTATATA
GCAAAGAAAATAACATACGTGCGGTTACGCACTCTCTTCTGGCTTTTGTT
TTACTTCCACCGACCTGCTCCCCCACCGGCAACCTCTTTTTCGCTCCTCG
CGCGAAAACAAAACGCTAGGCTCTCTCACGCGGGGCGACTTTTCCACACG
GCACTGAGCGTCCCGCTCTTCTCCACGGACGGCATCATGCTCTGGGGCGT
GGGCGACCGCCAGCTGATGGGCGTGGTCGTCATCTACTTCCCGACGGCCG
AGAACCACGCCGCCGCTCTGATAGCCTACGCTTCCGCGGCGGCGGCGGCG
GCCTCGCCCATCTCGGCGCTCATGGTCCACCGAGCGCTGTTCGTTGAAGG
CCGGGCGAACCGCGTTAAGAGAAACTGGAGGGTCATGAGAATCGCGCTTC
GGTTTGCCCTTCCCATGTTCATCAGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9488:260..5288+

>mRNA_S-dermatodea_contig9488.17519.1 ID=mRNA_S-dermatodea_contig9488.17519.1|Name=mRNA_S-dermatodea_contig9488.17519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig9488:260..5288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGAAAAGCCCCCATCGCGCCCGCCGTTCGATACATGATGGAGGTCAT
GTGCACCGACCTCGTGGCCTGCGGCGAGTGCTTCGTGCCGGACAACCGCG
CGGGGCAGACCCTGGTGCGGTTCTGCGGGTTTGTGCCCATCGAGGTGGAC
GAGGCAATAGATGGCGAGACAAGCCGCTTCATGGAGGGCTACTACGGGGG
CCACGAGGCGTACGGGCGAGGGGTTGGGTTGCCGGGGATTGCCTGGGCGA
CCGCGAGGCCCACCGTCGCCGAGATTTCGACGCTCACTTCGGACGCCTCT
TTCGATTCTGGAGGGAAGAGCGCCGAAAAGCCCCCATCGCGCCCGCCGTT
CGATACATGATGGAGGTCATGTGCACCGACCTCGTGGCCTGCGGCGAGTG
CTTCGTGCCGGACAACCGCGCGGGGCAGACCCTGGTGCGGTTCTGCGGGT
TTGTGCCCATCGAGGTGGACGAGGCAATAGATGGCGAGACAAGCCGCTTC
ATGGAGGGCTACTACGGGGGCCACGAGGCGTACGGGCGAGGGGTTGGGTT
GCCGGGGATTGCCTGGGCGACCGCGAGGCCCACCGTCGCCGAGATTTCGA
CGCTCACTTCGGACGCCTCTTTCGATTCTGGAGGGAAGAGGCTCTCTCAC
GCGGGGCGACTTTTCCACACGGCACTGAGCGTCCCGCTCTTCTCCACGGA
CGGCATCATGCTCTGGGGCGTGGGCGACCGCCAGCTGATGGGCGTGGTCG
TCATCTACTTCCCGACGGCCGAGAACCACGCCGCCGCTCTGATAGCCTAC
GCTTCCGCGGCGGCGGCGGCGGCCTCGCCCATCTCGGCGCTCATGGTCCA
CCGAGCGCTGTTCGTTGAAGGCCGGGCGAACCGCGTTAAGAGAAACTGGA
GGGTCATGAGAATCGCGCTTCGGTTTGCCCTTCCCATGTTCATCAGGTAA
GCTCTCTCACGCGGGGCGACTTTTCCACACGGCACTGAGCGTCCCGCTCT
TCTCCACGGACGGCATCATGCTCTGGGGCGTGGGCGACCGCCAGCTGATG
GGCGTGGTCGTCATCTACTTCCCGACGGCCGAGAACCACGCCGCCGCTCT
GATAGCCTACGCTTCCGCGGCGGCGGCGGCGGCCTCGCCCATCTCGGCGC
TCATGGTCCACCGAGCGCTGTTCGTTGAAGGCCGGGCGAACCGCGTTAAG
AGAAACTGGAGGGTCATGAGAATCGCGCTTCGGTTTGCCCTTCCCATGTT
CATCAGGTAA
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