prot_S-dermatodea_contig9488.17519.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9488.17519.1
Unique Nameprot_S-dermatodea_contig9488.17519.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length210
Homology
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BLAST of mRNA_S-dermatodea_contig9488.17519.1 vs. uniprot
Match: D8LQ49_ECTSI (HPP family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ49_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 8.110e-79
Identity = 138/225 (61.33%), Postives = 165/225 (73.33%), Query Frame = 0 
Query:    1 RRKAPIAPAVRYMMEVMCTDLVACGECFVPDNRAGQTLVRFCGFVPIEVDEAIDGETSRFM---------EGYYGGHEAYGRGVGLPGIAWATARPTVAEISTLTSDASFDSGGKRLSHAGRLFHTALSVPLF-----STDGIMLWGVGDRQLMGVVVIYF--PTAENHAAALIAYASAAAAAASPISALMVHRALFVEGRANRVKRNWRVMRIALRFALPMFIR 209
            RRKAPI PAVRY+ME MC DLVACGECFVP  RA  TLVRFCGF+P EV E +D +T RFM         +G   G EAYGRG+GLPGIAWATAR T+ E+STLTSDASFD GG RL+ AG++F TAL++P++     +  G  LWG   +QLMGVVVIYF  P   + A+AL+ YASA A +A PIS LMVHRA FV GR++R+KRNWRV+ I LRFA+ M +R
Sbjct:  137 RRKAPITPAVRYLMEAMCVDLVACGECFVPHFRARHTLVRFCGFIPPEVREGLDKQTRRFMGGEDVCDAVDGNVTGGEAYGRGIGLPGIAWATARATLVELSTLTSDASFDCGGVRLAQAGKIFQTALAIPIYFATNPTNTGSTLWGQ-QQQLMGVVVIYFRGPKNASSASALVRYASAVAKSAGPISELMVHRARFVVGRSHRIKRNWRVLIIGLRFAMLMLVR 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9488.17519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ49_ECTSI8.110e-7961.33HPP family protein n=1 Tax=Ectocarpus siliculosus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 114..134
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 182..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 135..153
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 112..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9488contigS-dermatodea_contig9488:260..5288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9488.17519.1mRNA_S-dermatodea_contig9488.17519.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9488 260..5288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9488.17519.1 ID=prot_S-dermatodea_contig9488.17519.1|Name=mRNA_S-dermatodea_contig9488.17519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
RRKAPIAPAVRYMMEVMCTDLVACGECFVPDNRAGQTLVRFCGFVPIEVD
EAIDGETSRFMEGYYGGHEAYGRGVGLPGIAWATARPTVAEISTLTSDAS
FDSGGKRLSHAGRLFHTALSVPLFSTDGIMLWGVGDRQLMGVVVIYFPTA
ENHAAALIAYASAAAAAASPISALMVHRALFVEGRANRVKRNWRVMRIAL
RFALPMFIR*
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