mRNA_S-dermatodea_contig9482.17514.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9482.17514.1
Unique NamemRNA_S-dermatodea_contig9482.17514.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.920e-39
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSP-LSNPA-TCTIDSTTGECIKTDITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCSRWV 309
            MKLGLYHSIHNV D EV Y+DISIEGP GIIRTSP + +P  TC++DS+ G+C +TDITC  L GNTIDWECV G GSLVEVEARGGT+ SC  GT++EPCSR++
Sbjct:   92 MKLGLYHSIHNVHDQEVIYQDISIEGPNGIIRTSPHVDDPTNTCSVDSS-GQCQQTDITCTALSGNTIDWECVFGYGSLVEVEARGGTLTSCSAGTKVEPCSRFI 195
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.140e-35
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSP-LSNPA-TCTIDSTTGECIKT--DITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCSRWV 309
            MKLGLYHSIHNVAD EV Y+DISIEGP GIIRTSP + +P  TC IDS+      T  DITC  L GNTIDWECV G GSLVEVEARGGT+ SC  GT++EPCSR++
Sbjct:  346 MKLGLYHSIHNVADQEVIYQDISIEGPNGIIRTSPHVDDPTNTCPIDSSDIWLNPTMVDITCAALSGNTIDWECVFGYGSLVEVEARGGTLTSCSAGTKVEPCSRFI 452
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.650e-31
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSPLSNPATCTIDS--TTGECIKTDITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCSRWV 309
            MKLGLYHSIHNV D EV YRDISIEGP GIIRTSP   P+   I    T G C ++  TC    G+TIDW C+ G GSLVEVEARGG ++SCP+GT  EPCSR++
Sbjct:  278 MKLGLYHSIHNVHDQEVIYRDISIEGPNGIIRTSP---PSDIHIHPCRTFGSCPRSVTTCPPSSGSTIDWNCMFGVGSLVEVEARGGKLVSCPSGTDAEPCSRFI 379
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.030e-30
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSPLSNPATCTIDSTTGECIKTDITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCSRWV 309
            MKLGLYHSIHNV D EV Y+DISIEGP GIIRTSP S+    +  ST G C  +  TC    G+TIDW C+ G GSL EVEARGG ++SCP+GT  EPCSR++
Sbjct:  170 MKLGLYHSIHNVHDQEVIYQDISIEGPNGIIRTSPPSDIHIHSC-STFGSCSVSGTTCPPSSGSTIDWNCMFGVGSLAEVEARGGKLVSCPSGTDAEPCSRFI 271
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.380e-25
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:   34 VADGEVEYRDISIEGPMGIIRTSPLSNPA--TCTIDSTTGECIKTDITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCSRWV 309
            V D EV Y+DISIEGP GIIRTSP S+P   TC    T G C K+  TC    G+TIDW C+ G GSLVEV+ARGGT++SC +GT  EPCSR++
Sbjct:    7 VHDQEVIYQDISIEGPNGIIRTSPTSDPPIDTCL---TLGSCPKSGTTCPPSSGSTIDWNCMFGAGSLVEVQARGGTLVSCSSGTDAEPCSRFI 97
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-8
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSP 105
            MKLGLYH I  V DG+VEYRDISIEGP GIIRTSP
Sbjct:  222 MKLGLYHKIDQVYDGKVEYRDISIEGPNGIIRTSP 256
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: D7FK18_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK18_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.010e-8
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSP 105
            MKLGLYH    V DG+VEYRDISIEGP GIIRTSP
Sbjct:   75 MKLGLYHKTDQVYDGKVEYRDISIEGPNGIIRTSP 109
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: D8LDJ9_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.050e-8
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSPLSNPA 120
            MKLGLYH    V DGEVE RD+SIEGP GIIRTSP  +P+
Sbjct:  251 MKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTSPEESPS 290
[Close]
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.790e-7
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSP 105
            MKLGLYH    V DGEVE RD+SIEGP GIIRTSP
Sbjct:  288 MKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTSP 322
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9482.17514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LDH2_ECTSI6.920e-3970.48WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQZ0_9PHAE3.140e-3569.16WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JBB3_9PHAE4.650e-3162.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXY2_9PHAE1.030e-3062.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH3_ECTSI3.380e-2559.57WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAW5_9PHAE1.220e-882.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK18_ECTSI3.010e-880.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDJ9_ECTSI3.050e-870.00Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K5S3_9PHAE1.790e-777.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9482contigS-dermatodea_contig9482:984..3965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4.8e-33
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9482.17514.1prot_S-dermatodea_contig9482.17514.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9482 984..3965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.38783-CDS-S-dermatodea_contig9482:983..10311622925411.38783-CDS-S-dermatodea_contig9482:983..1031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 984..1031 +
1694079915.5923278-CDS-S-dermatodea_contig9482:983..10311694079915.5923278-CDS-S-dermatodea_contig9482:983..1031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 984..1031 +
1622925411.4000676-CDS-S-dermatodea_contig9482:1296..13921622925411.4000676-CDS-S-dermatodea_contig9482:1296..1392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 1297..1392 +
1694079915.6067064-CDS-S-dermatodea_contig9482:1296..13921694079915.6067064-CDS-S-dermatodea_contig9482:1296..1392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 1297..1392 +
1622925411.4147594-CDS-S-dermatodea_contig9482:3776..39651622925411.4147594-CDS-S-dermatodea_contig9482:3776..3965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 3777..3965 +
1694079915.6168263-CDS-S-dermatodea_contig9482:3776..39651694079915.6168263-CDS-S-dermatodea_contig9482:3776..3965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 3777..3965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9482.17514.1

>prot_S-dermatodea_contig9482.17514.1 ID=prot_S-dermatodea_contig9482.17514.1|Name=mRNA_S-dermatodea_contig9482.17514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MKLGLYHSIHNVADGEVEYRDISIEGPMGIIRTSPLSNPATCTIDSTTGE
CIKTDITCGVLDGNTIDWECVLGPGSLVEVEARGGTMLSCPTGTQLEPCS
RWVGRACGAS*
back to top

mRNA from alignment at S-dermatodea_contig9482:984..3965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9482.17514.1 ID=mRNA_S-dermatodea_contig9482.17514.1|Name=mRNA_S-dermatodea_contig9482.17514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2982bp|location=Sequence derived from alignment at S-dermatodea_contig9482:984..3965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCTCGGCCTCTACCACTCGATCCACAACGTCGCCGACGGAGAGGT
AAGCCCTCTGCTGCAACGAGCGTTTTCCACATTTGTATTGATGTTGTGTT
ATTTTATTATATTTTATTTTATTTTCACGTTTGCAACCGACCGGCCCACC
AGCGGTTCCATAAAATCTAAACGTACTTCATATACATACATCCCTAACTA
TCGAGAGATCGAGAAAAAACAAAAATACTTATGGACTATACGTGTGCACA
AATCAATAAAATCAATCAATAAAAAAAGCAAATCAAATGTACTCATACCG
TTAAATGTATCAGGTGGAGTACAGGGATATTTCCATCGAAGGGCCAATGG
GAATCATCAGAACTAGCCCGCTGTCCAACCCCGCAACGTGCACGATCGAC
AGCACCACGGTGAGCAGCGTGGTCGGGGGGAGGGGCCAAGCTAATATACG
AGGTGCTTGCTGCTGATCGGGTTTTCGCATCAATCTTAACCCTTTTGGGA
CTAAGGCTGTTATCGGGTAGTTGTTTGCTCTTATTATATGCCCTTTTGTT
TGGGACCAAGGCTGTTTTCGGGTAACTGTTTGCTATTATGATAGCCAACA
GTTACCCGGAAACAGGTTTGGTCCCCAGGCTTAGTCCCAAAAGCGTAAAT
AATAATAGCAAACAGTTACCCGAAGACAGCCTTAGTCCCACAAGGGTTAA
GTAGTCCGCGTTCGAACGGCTTGTTCCAACTAGTTCTTTGCGGAAATGCT
AGAATCGGTACAATACTGTACTGTGGAGCAATCCAAAGACAAGGGGGGGG
TAAAAAACGTTCTTAGAACATCGGCTTGTTTGTCTGTCGTGCAGGAGGAG
TAAGGAGGCGTTTTTCCATTATGCTGTGCTCGCGCGTGATTGGCCAGCCC
ATCTCTGGTCCCGTTCCGAGTTTACCAGGTTCACCCAATTTGTTCCGGAT
TGCGACGTTATTAATAGTATTATAGCGCGCCCCGTGGTTAGACTGGTGAC
CAACAGCCCAGTAAGCGGAGGACCGGGGTTCGAATCCCGGCAGAGTCGAT
GTTTGTTTATTATTTTCTCTACCTCCGCCGCCGAAAGCGCGAGAGCGTGA
GTAAGCAAAACATCCGAAAAATCGGCGAGCTGCGGGAGTGCCGAACCCAA
TGCATTCGCGATAAAAATCAAAGGTGAGAACCGGGGAGAGNNNNNNNNNN
ATGGGATGATCCCTTGTGACCACAGTTGGACCTCGGAAAAGAAACTCTGT
CATATGTGTGCCAAAAACAAAAAAGTAGTAGTAAGTGGTGACACTTGTCA
CGCTTAGCTCGAATGCGATCGAATGCACGGTGGGTGGTGGTGGTGGTGGT
GGTGGTGTCTATGCCCACCCGTATAATGGCGGCATTCGGCGCAATAACCT
ACTACACTAGTAGTAGTATTAATACTCCCTTTGGGACTGAGTCTGTTAAA
GCGCCAATTATTCGTTACGACAATAACAGTATTATAGTGTGGCTGGCCGG
CCGACAACCCCTCTATCTTTCGATAGCTCTGCCGGTGTATGTGTATGTGT
CGGCCCTTACATGTGCGACACGGCTTAATACGTGGCCGAGCAGCAGCGGC
AAACGACTGTGGCCAAGATGAGACGGCGTGTGAGTAGTACAGACGCGCCG
AACATCCCCACGTCCTAACCCACTTCGAGAAGCGTGGACTCTTCAAGCGC
AGCTATCGTGACTTCGGATTGCTACCTGACAGGAAGGAGCGGATGTGCCC
TTCGTCGTGTTGGCTGTAGTCTCCGACGTGTGATACCCCGGCGTCCATCC
AGAGCGTCAAATGTTCCAATCTGACACTGCGTGTAGAAAAGAAGAGGCAC
AAACCCTCGCAATATACACACAGAGATTCATTCGTGTATCCGACAAATCA
TGTATCATGTATCATGTGACACTAACCGATGTGTTGCCACCCGATTATGG
CTAGAAGTCGGTCCTGTCAGATAAGAGAGATGGGATGATCAATCCTTTGT
GACCACAGTTGGACCTACCTCGGAATATAAAGTCTATCGTATGTGTGCCA
AAACAAAAACAAAAAATGTACCAGTGTTACTTTTGTTTTTTCGAGTGAGC
CCTTCTCTTCGTCTGCTGGTGGAACTGTACACCCAGACATCGGCCATCAT
CGTTTTCACCGTCGACGTTTTGGTGGGGATGGTCAGCGCCACGTTTGCCT
GACGTCGTCGTGACCACAGCTTCTCGTCCGTCATAGTACAGACATATGGT
TCAGCACCTTGTTTCTCGTGCACTCTATGTAACAAACCCCCCTTCCCCCC
CCCCCGCTCGCAATGCCTCTCCATCCCCCTACGTAAGTAAATCTCTGCAT
CTCTTGATTTTGTTTTGTTATTTGCGATCACATTTTACAACCGACCGACC
CGCCCACAAATGGTTGCAGTTCCCGCTCGCGGTCAGGTGAGAAATCGAGA
GATCGACAAAAAACTACTGGTATAGTACGGAATTACCTACGTAGTACATA
CTATGAAGGGATTGTCACAAACTCTCGGGAACAGAGTAAGGGGACATACC
TCGCAACTTGGGCCTGCTAAAATGAAAAAATGAAAATGAAAAAACGATCC
CCTTTCCCAAAGGAAGGTCTCAGCGCACCCGCGATATTCTCATCGAGTCT
GGCAATCGTTACGCAAAAATTAAAAACGCCTAAAAACCCTAGCCGCGTGA
ACCACGAGCGCGCGAGAGATAAATGTGGTATGATAGCCCACAAGCCTCTG
TCTCACTTCCTCTTCTGCTGCCCCTCGTTTTTCTCAATACAAGGGGGAAT
GCATTAAAACGGACATCACGTGCGGCGTACTCGACGGGAACACCATCGAC
TGGGAGTGCGTCCTCGGCCCTGGCTCTCTCGTCGAAGTAGAAGCACGCGG
CGGTACGATGCTATCGTGTCCCACCGGAACTCAGCTCGAGCCGTGCTCCA
GGTGGGTAGGTAGAGCGTGCGGAGCGAGCTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9482:984..3965+

>mRNA_S-dermatodea_contig9482.17514.1 ID=mRNA_S-dermatodea_contig9482.17514.1|Name=mRNA_S-dermatodea_contig9482.17514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig9482:984..3965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCTCGGCCTCTACCACTCGATCCACAACGTCGCCGACGGAGAGAT
GAAGCTCGGCCTCTACCACTCGATCCACAACGTCGCCGACGGAGAGGTGG
AGTACAGGGATATTTCCATCGAAGGGCCAATGGGAATCATCAGAACTAGC
CCGCTGTCCAACCCCGCAACGTGCACGATCGACAGCACCACGGTGGAGTA
CAGGGATATTTCCATCGAAGGGCCAATGGGAATCATCAGAACTAGCCCGC
TGTCCAACCCCGCAACGTGCACGATCGACAGCACCACGGGGGAATGCATT
AAAACGGACATCACGTGCGGCGTACTCGACGGGAACACCATCGACTGGGA
GTGCGTCCTCGGCCCTGGCTCTCTCGTCGAAGTAGAAGCACGCGGCGGTA
CGATGCTATCGTGTCCCACCGGAACTCAGCTCGAGCCGTGCTCCAGGTGG
GTAGGTAGAGCGTGCGGAGCGAGCTGAGGGGAATGCATTAAAACGGACAT
CACGTGCGGCGTACTCGACGGGAACACCATCGACTGGGAGTGCGTCCTCG
GCCCTGGCTCTCTCGTCGAAGTAGAAGCACGCGGCGGTACGATGCTATCG
TGTCCCACCGGAACTCAGCTCGAGCCGTGCTCCAGGTGGGTAGGTAGAGC
GTGCGGAGCGAGCTGA
back to top