prot_S-dermatodea_contig948.17512.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig948.17512.1
Unique Nameprot_S-dermatodea_contig948.17512.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length277
Homology
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 2.180e-106
Identity = 184/323 (56.97%), Postives = 225/323 (69.66%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGV-------------------------PKGNADLAD----EWHTASWARPDD----RRTGGGXXXXXXXERKANITEADRILEKIAKGE-QLKASSWEGGGKVQREQKSLARGKGTWSPSRRR 276
            +TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR LE+WE+EKLKNLT KTL+SP K L+ +P+R      Q+ +  R SSR   + +Q Q+ GS      L++EEDEWNQ GAWDRSGV                         P+G     D    EW TASWAR D+    R+  G        +RKA + E DRILE+I KG+ +L+A +WEGGG+V R+ +S A  K  W  SR R
Sbjct:  149 LTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSARAGAPATTASARGGGTPPQGEPAFFDDDDHEWQTASWARKDEKEPTRQGTGKGSRSSSGKRKARVNEGDRILERIKKGDVKLEAPAWEGGGRVDRDNRSNASRKKGWPSSRNR 468          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 1.560e-88
Identity = 145/210 (69.05%), Postives = 174/210 (82.86%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGVPKGNADLA 197
            +TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR+LE+WE+EKLKNLT KTL+SP K L+ +P+R      Q+ +  R SSR   + +Q Q+ GS      L++EEDEWNQ GAWDRSGV K  A  A
Sbjct:  227 LTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSA 433          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 7.420e-51
Identity = 79/127 (62.20%), Postives = 101/127 (79.53%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 127
            +TN+N+W+N LTHPSYGHEK YRV+IT GYP+P  W  +TEGMML+G+  PT+PC +E++ +D R     +D++++EGKNRQIRRMFE IGH VR+ITR+ HGPI LK LRPGEWR L   EVE+LK
Sbjct:  153 LTNDNAWVNVLTHPSYGHEKLYRVAITEGYPSPPAWKKVTEGMMLEGETAPTQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRALTASEVERLK 279          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2V7H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7H6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.740e-35
Identity = 64/137 (46.72%), Postives = 94/137 (68.61%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSP 137
            MTNE S ++ LTHPS+GHEKTYRVSI SG    ++W     G+++ G+  PT PC +E V +D +   + VD+ ++EG+NRQIRRMF+ +G+ V +I R   GP+RL GL  GEW+ L+ +EV+KL+N++    + P
Sbjct:   21 MTNELSMVHILTHPSFGHEKTYRVSI-SGELKSKDWQKFESGLLISGEKRPTAPCYLEPVLYDSKKKNSVVDVTLREGRNRQIRRMFDHLGYKVVNIKRTQFGPVRLGGLSHGEWKELKHYEVKKLRNISKTKTKKP 156          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A0G4ETA8_VITBC (S4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETA8_VITBC)

HSP 1 Score: 116 bits (290), Expect = 2.860e-26
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVT--TVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLR-PGEWRRLEEWEVEKLKNLTI 131
            +TN+N W++PLTHPSYGH+K Y V++ +G P  +  N L EG++L G+   T P  + V    + S  +  T+++ ++EG+NRQ+RRM E IGH V +I R+  GP+ LKG+  PG+WR L+  EV  LK   I
Sbjct:  251 LTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLLPGERTKTAPVSIGVFFEPKTSRKSFGTLEVTLREGRNRQLRRMMEFIGHPVLNIRRVDFGPLTLKGITTPGQWRELKPSEVFMLKRAVI 384          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A353GEV2_9BACT (Pseudouridine synthase n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GEV2_9BACT)

HSP 1 Score: 112 bits (279), Expect = 6.840e-26
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVT--TVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 127
            +T++   IN LTHP YG  KTYR ++T G  T EE + L  GMML+    PT     ++V  D RS  T  T+D+ I EG+NRQ+RRMF+ +GH VR + RI +GP+RL+ ++ G WR+L E E+E L+
Sbjct:  124 LTSDGDLINKLTHPRYGVCKTYRATVT-GKITEEELDVLQSGMMLED--GPTASAEAKLVQVDERSYATFTTLDLTIHEGRNRQVRRMFDALGHQVRYLERIQYGPLRLEKMKHGAWRKLTEQELEALR 249          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.430e-25
Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEG-MMLDGDPNPTRP-CIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLR 135
            +TN+N W++ L+HP++GH K YRV + +G    + + TL  G ++L+GD  P  P  + E + +   +  T+++MI++EG+NRQIRRM E +GH VR+I R A GPI L  L+ GEWR L + EV +LK  + K+ R
Sbjct:  297 LTNDNEWVHRLSHPAFGHLKRYRVVVKNGPVKADVYRTLQRGGVVLEGDERPLAPLAVAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTLRKSEVLQLKASSEKSPR 433          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2WX07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX07_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.030e-24
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 127
            +TN+NSW++ LTHPS+G  K YR+ +  G+ + +    + +G+ L  +     PC VE VD D R   T++ ++++EG+NRQIRRM + +G  V+S+TR + G + L+ L PG+WR L + EV+ LK
Sbjct:  205 LTNDNSWLHKLTHPSHGCTKMYRI-VVEGFLSNDVLRRIAQGLQLPDEERKLSPCAVEFVDQDLRQRTTSLRIVLQEGRNRQIRRMMDFVGFPVKSLTRTSVGSVGLRDLSPGDWRELSKKEVDALK 330          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT)

HSP 1 Score: 107 bits (267), Expect = 3.340e-24
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNL 129
            +TN+      LTHP +   KTYRV +  G+  P+   +L EG++L+     T P  V  VD+D+ +  T +D+ I+EG+NRQ+RRM E +GH VR +TRI  G +RLKGL PG WR+L   E+  L+ L
Sbjct:  112 LTNDGDLAYKLTHPRFEIPKTYRV-VAKGFVGPQAARSLAEGVVLED--GLTAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKLRPDELAALRTL 237          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A4R1Q659_9FIRM (Pseudouridine synthase n=1 Tax=Anaerospora hongkongensis TaxID=244830 RepID=A0A4R1Q659_9FIRM)

HSP 1 Score: 106 bits (265), Expect = 5.130e-24
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 0
Query:    1 MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIK 132
            MTN+    + LTHPS+  +KTYR  +  G P  E+ + L  G+ L+     T P  V  V++DR   +TTV+++I EG+NRQ+RRMFE IGH VR + R+    + L G+R G +R LE  EVE LKN+ +K
Sbjct:  113 MTNDGELTHALTHPSHEIDKTYRAKVL-GRPPEEKLDRLRAGIKLED--GLTAPAKVNAVEYDREKDLTTVEIVITEGRNRQVRRMFEAIGHPVRQLKRVKFAFLTLVGVRRGAYRHLEADEVETLKNIALK 241          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP76_ECTSI2.180e-10656.97Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JKH0_9PHAE1.560e-8869.05S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CPN1_9STRA7.420e-5162.20Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2V7H6_9STRA4.740e-3546.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4ETA8_VITBC2.860e-2644.03S4 domain-containing protein n=1 Tax=Vitrella bras... [more]
A0A353GEV2_9BACT6.840e-2646.51Pseudouridine synthase n=1 Tax=Candidatus Sumerlae... [more]
A0A7R9UB15_9STRA1.430e-2543.07Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2WX07_9STRA2.030e-2440.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
S0EVG8_CHTCT3.340e-2443.41Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=... [more]
A0A4R1Q659_9FIRM5.130e-2443.94Pseudouridine synthase n=1 Tax=Anaerospora hongkon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..135
e-value: 1.7E-22
score: 81.7
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 1..127
NoneNo IPR availablePANTHERPTHR21600:SF23RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Ecoord: 1..127
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 1..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig948contigS-dermatodea_contig948:12105..15176 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig948.17512.1mRNA_S-dermatodea_contig948.17512.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig948 11881..16050 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig948.17512.1 ID=prot_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=277bp
MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPN
PTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRI
AHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNKLSGSPSRQSGS
VARPSSRASPVRAQTQHRGSLNDEEDEWNQTGAWDRSGVPKGNADLADEW
HTASWARPDDRRTGGGGRGKGKGERKANITEADRILEKIAKGEQLKASSW
EGGGKVQREQKSLARGKGTWSPSRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf