mRNA_S-dermatodea_contig9478.17511.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9478.17511.1
Unique NamemRNA_S-dermatodea_contig9478.17511.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9478.17511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9478contigS-dermatodea_contig9478:1023..2460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9478.17511.1prot_S-dermatodea_contig9478.17511.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9478 1023..2436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.0585558-CDS-S-dermatodea_contig9478:1022..12921622925411.0585558-CDS-S-dermatodea_contig9478:1022..1292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9478 1023..1292 -
1694079915.3271637-CDS-S-dermatodea_contig9478:1022..12921694079915.3271637-CDS-S-dermatodea_contig9478:1022..1292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9478 1023..1292 -
1622925411.0771897-CDS-S-dermatodea_contig9478:2424..24361622925411.0771897-CDS-S-dermatodea_contig9478:2424..2436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9478 2425..2436 -
1694079915.3373332-CDS-S-dermatodea_contig9478:2424..24361694079915.3373332-CDS-S-dermatodea_contig9478:2424..2436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9478 2425..2436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.0873091-UTR-S-dermatodea_contig9478:2436..24601622925411.0873091-UTR-S-dermatodea_contig9478:2436..2460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9478 2437..2460 -
1694079915.3564484-UTR-S-dermatodea_contig9478:2436..24601694079915.3564484-UTR-S-dermatodea_contig9478:2436..2460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9478 2437..2460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9478.17511.1

>prot_S-dermatodea_contig9478.17511.1 ID=prot_S-dermatodea_contig9478.17511.1|Name=mRNA_S-dermatodea_contig9478.17511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
MFGKVLAPGSDKPESAPEEPGTEGTEGGAATSSPEGDSQVPKAHPCSPDD
GGGESGSAREASGAVDDDGGVEGGRREVGESEEPLWGESSGDFE
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mRNA from alignment at S-dermatodea_contig9478:1023..2460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9478.17511.1 ID=mRNA_S-dermatodea_contig9478.17511.1|Name=mRNA_S-dermatodea_contig9478.17511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1438bp|location=Sequence derived from alignment at S-dermatodea_contig9478:1023..2460- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGTGTTGGCGGCGGTGGTCTGGATGTTCGGAAAGGTGAGATGGGCGCA
TCTGTATAATGCCCTTCCAACGAAAGTCATGTTATACTACTTGTAGTATG
ATACATCTTATCCAGGTGTTGCCTTGGAGTATGTGGCAGCACGCGCGCAG
AATGCTGACTGACGTTTCGCCGGGGCACGTTCTGCTGAGCCAAGTATCGC
ACGTGGGGGTTCGCGTGAACTATGTTCTACTATTAATAAGGATATTTTCT
TTCGGGCTGCCGACGAAATCATACTTCTATCAGTTTTGTGTACAACAAAG
TCCACCCCAGGTCCTGTCCCGAGGAGTTACGGATTGTACACTTTCTGTTT
TCTGTGTGTTTATAGAAATAGAGTGCTCTCGGTAAAAGGGTCTGCGAGCT
GAGAAGGTGCTGGACCCGAATGATTGATTGATTGATTGATTGATTGGTTG
ATTGGCTAATTGATTGAGTGATCACCGCAGTTACAACCGACCTGCCCACC
AATGGTTGCTGACCCCTCTACGTCGTCGTCAGACGAGAATTCGAGCGACC
GAAAAACCCTACGAATGTACCTATATATTGTACCAGGTACATCATACATC
ATAAATAATGAACACAAAACGCTCGGTATCGGAGAGAACGTAAACGTTGG
AACTTGCGTCTGCTAAATAAACAGAAAGAGAACGACAGCCCCCCCCCCCC
CCCTCCTCAAAAATTAAAGATTTCATAAACATACGGCGAGCGTTGGGGTC
CCACATTTTCAAGAGGGAAGATGGTCCAAGCTATAATACACCTATGGAGG
CTCACTTGTAACGTATGATGCTCATAGATATGGTGTCTTATCGTGTATAA
TGTTATATGGTTATGGTATCATACAGGACATGCGTCTTTGTCCTGATGTA
TACCCGCCCCCCCCCCCTTACAGTGTCCCAAGTTTGATAGTAAATGGAGT
GTCACAAATAAATAGACTTGTAAATGTTTTGATGGTTCATGGAGTGTCGC
AGGTTTAGTCAACAACCTGTAAAGCTGTAATCATACAAGTAGAAGGGAGC
GTCACTAGTTTAGCAGAATAGAGTGTCACAAGCACGCTACAAACACAAGG
CAGCGGTGTCAAATCACGTTCCTGCGATTTAACGCCGCGCTTTCCCCCCA
CGATCTACCCTCTCACAGGTCCTCGCCCCAGGATCCGACAAACCCGAATC
AGCGCCCGAAGAACCCGGCACAGAGGGGACAGAAGGCGGGGCTGCGACAT
CGTCTCCCGAGGGAGATTCTCAAGTGCCGAAGGCCCACCCGTGTTCCCCT
GATGACGGTGGGGGAGAATCAGGTAGCGCTCGAGAGGCCTCGGGTGCTGT
AGATGACGATGGCGGCGTCGAGGGCGGACGTCGAGAAGTCGGGGAATCGG
AGGAGCCGCTGTGGGGGGAGTCGTCGGGCGATTTTGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9478:1023..2460-

>mRNA_S-dermatodea_contig9478.17511.1 ID=mRNA_S-dermatodea_contig9478.17511.1|Name=mRNA_S-dermatodea_contig9478.17511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig9478:1023..2460- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGGAAAGATGTTCGGAAAGGTCCTCGCCCCAGGATCCGACAAACC
CGAATCAGCGCCCGAAGAACCCGGCACAGAGGGGACAGAAGGCGGGGCTG
CGACATCGTCTCCCGAGGGAGATTCTCAAGTGCCGAAGGCCCACCCGTGT
TCCCCTGATGACGGTGGGGGAGAATCAGGTAGCGCTCGAGAGGCCTCGGG
TGCTGTAGATGACGATGGCGGCGTCGAGGGCGGACGTCGAGAAGTCGGGG
AATCGGAGGAGCCGCTGTGGGGGGAGTCGTCGGGCGATTTTGAGGTCCTC
GCCCCAGGATCCGACAAACCCGAATCAGCGCCCGAAGAACCCGGCACAGA
GGGGACAGAAGGCGGGGCTGCGACATCGTCTCCCGAGGGAGATTCTCAAG
TGCCGAAGGCCCACCCGTGTTCCCCTGATGACGGTGGGGGAGAATCAGGT
AGCGCTCGAGAGGCCTCGGGTGCTGTAGATGACGATGGCGGCGTCGAGGG
CGGACGTCGAGAAGTCGGGGAATCGGAGGAGCCGCTGTGGGGGGAGTCGT
CGGGCGATTTTGAG
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