mRNA_S-dermatodea_contig94757.17510.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A161GCU0_9PHAE (Elongation factor tu (Fragment) n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A161GCU0_9PHAE) HSP 1 Score: 345 bits (885), Expect = 4.580e-119 Identity = 174/181 (96.13%), Postives = 181/181 (100.00%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPS+KKGDNKWVDKIYSLM+SVD+YIPTP+RD+DK+FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct: 4 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKSFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 184
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: EFTU_COSCS (Elongation factor Tu, chloroplastic (Fragment) n=67 Tax=cellular organisms TaxID=131567 RepID=EFTU_COSCS) HSP 1 Score: 341 bits (874), Expect = 2.030e-117 Identity = 171/181 (94.48%), Postives = 180/181 (99.45%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPI+TGSALQALDAI+NEP++KKGDNKWVDKIYSLM+SVD+YIPTP+RD+DK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct: 15 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPILTGSALQALDAINNEPTLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 195
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q32544_SACLA (Protein synthesis elongation factor Tu (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q32544_SACLA) HSP 1 Score: 330 bits (845), Expect = 5.300e-113 Identity = 167/181 (92.27%), Postives = 174/181 (96.13%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGP PQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLS Y+FPGDDIPI TGSALQA DAI+NEP KKGDNKWVDKIY+LMDSVD+YIPTP+RD+DK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct: 15 LVVSAADGPTPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSKYEFPGDDIPIRTGSALQARDAINNEPPFKKGDNKWVDKIYTLMDSVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 195
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA) HSP 1 Score: 313 bits (803), Expect = 4.100e-104 Identity = 156/181 (86.19%), Postives = 173/181 (95.58%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIPIV GSALQAL+ I+ EP++KKGDNKWVDKIYSLMD++D+YIPTP RDI+K FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV+LVGLG+T+ST VTGVEMFQKTL+EG AGDN
Sbjct: 104 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDAELLELVELEVRELLSDYDFPGDDIPIVAGSALQALEIITTEPNLKKGDNKWVDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTLEEGFAGDN 284
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q32748_9STRA (Protein synthesis elongation factor Tu (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=Q32748_9STRA) HSP 1 Score: 302 bits (774), Expect = 3.430e-102 Identity = 149/181 (82.32%), Postives = 170/181 (93.92%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI GSALQA++AIS+ P+IK+GDN WVDKI++LMD+VD YIPTP RDI+K FLMAIEDVFSITGRGTVATG+I+RG+VKVG+TV++VG+GDT++TT+TG+EMFQKTLDEG AGDN
Sbjct: 15 LVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDAELLELVELEVRELLSAYDFPGDDIPICPGSALQAVEAISSNPAIKRGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTRTTTITGIEMFQKTLDEGFAGDN 195
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A6P1AKF6_9CYAN (Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AKF6_9CYAN) HSP 1 Score: 304 bits (779), Expect = 1.770e-100 Identity = 150/181 (82.87%), Postives = 170/181 (93.92%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILL+KQVGVP +VVFLNK+DQVDD EL+ELVELEVRELLS+YDFPGDDIP+V GSAL AL+A++ +P+IKKGDN+WVDKIY LMD+VD YIPTP RD+DK FLMA+EDVFSITGRGTVATG+I+RG VKVGETV+LVG+ DTKSTTVTGVEMFQKTLDEG+AGDN
Sbjct: 104 LVVSAADGPMPQTREHILLAKQVGVPSLVVFLNKQDQVDDEELLELVELEVRELLSSYDFPGDDIPVVAGSALLALEALTKDPNIKKGDNEWVDKIYELMDNVDEYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGETVELVGIKDTKSTTVTGVEMFQKTLDEGMAGDN 284
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q8HUC5_SKECO (Elongation factor Tu (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q8HUC5_SKECO) HSP 1 Score: 300 bits (768), Expect = 5.720e-100 Identity = 147/181 (81.22%), Postives = 169/181 (93.37%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILL+KQVGVPHIVVFLNK+DQVDD EL+ELVELEVRELLS YDFPGDDIPI GSAL+A++AIS+ P IK+GDN WVDKIY LMD+VD+YIPTP RD++K FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV++VG+ DT++TT+TG+EMFQKTLDEG AGDN
Sbjct: 81 LVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLSQYDFPGDDIPICPGSALRAIEAISSNPEIKRGDNPWVDKIYGLMDAVDSYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVEIVGVVDTQTTTITGIEMFQKTLDEGFAGDN 261
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A1X9PTY9_9RHOD (Elongation factor Tu, chloroplastic n=2 Tax=Rhodellaceae TaxID=661029 RepID=A0A1X9PTY9_9RHOD) HSP 1 Score: 302 bits (774), Expect = 1.010e-99 Identity = 147/181 (81.22%), Postives = 173/181 (95.58%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILL+KQVGVP +VVFLNKEDQVDD+EL+ELVELEVRELLSNYDFPGDDIPIV+GSAL AL+A+ PSI+KG++KWVDKI+SLMD+VD+YIPTP RD+DK FLMA+EDVFSITGRGTVATG+I+RG+VKVGET+++VGL DT++TT+TG+EMFQKTLDEG+AGDN
Sbjct: 104 LVVSAADGPMPQTREHILLAKQVGVPTLVVFLNKEDQVDDVELLELVELEVRELLSNYDFPGDDIPIVSGSALLALEAVIKNPSIQKGEDKWVDKIFSLMDAVDDYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGETIEIVGLRDTQTTTITGLEMFQKTLDEGMAGDN 284
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: B0M2B5_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Chattonella marina var. ovata TaxID=859643 RepID=B0M2B5_9STRA) HSP 1 Score: 297 bits (761), Expect = 2.090e-99 Identity = 147/181 (81.22%), Postives = 165/181 (91.16%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVRELLSNYDFPGDDIP + GSA QAL I+ PSI +GD+KWVDKI+ LMD+VD+YIP P RD+DK FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV +VGLG+T+ TTVTG+EMFQKTLDEG+AGDN
Sbjct: 88 LVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRELLSNYDFPGDDIPCIPGSAPQALQVIAENPSIGRGDDKWVDKIFELMDAVDDYIPAPERDVDKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVQIVGLGETRETTVTGIEMFQKTLDEGMAGDN 268
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A7S2H3H0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3H0_9STRA) HSP 1 Score: 298 bits (763), Expect = 3.180e-99 Identity = 146/181 (80.66%), Postives = 167/181 (92.27%), Query Frame = 1
Query: 1 LVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 543
LVVSAADGPMPQTREHILL+KQVGVP++V FLNKEDQVDD EL+ELVELEVRELLSNYDFPGDDIPI GSALQAL+ I + PS +GDNKWVDKI+SLMD+VD YIPTPVRD +K FLMA+EDVFSITGRGTVATG+I+RG++ VG+T+++VGLGDT+STTVTGVEMFQKTLD G+AGDN
Sbjct: 19 LVVSAADGPMPQTREHILLAKQVGVPNLVCFLNKEDQVDDEELIELVELEVRELLSNYDFPGDDIPITVGSALQALETIISLPSTVRGDNKWVDKIFSLMDTVDEYIPTPVRDTEKTFLMAVEDVFSITGRGTVATGRIERGVINVGDTIEIVGLGDTQSTTVTGVEMFQKTLDSGMAGDN 199 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig94757.17510.1 >prot_S-dermatodea_contig94757.17510.1 ID=prot_S-dermatodea_contig94757.17510.1|Name=mRNA_S-dermatodea_contig94757.17510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDback to top mRNA from alignment at S-dermatodea_contig94757:2..544- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig94757.17510.1 ID=mRNA_S-dermatodea_contig94757.17510.1|Name=mRNA_S-dermatodea_contig94757.17510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig94757:2..544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig94757:2..544- >mRNA_S-dermatodea_contig94757.17510.1 ID=mRNA_S-dermatodea_contig94757.17510.1|Name=mRNA_S-dermatodea_contig94757.17510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig94757:2..544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |