mRNA_S-dermatodea_contig9475.17509.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9475.17509.1
Unique NamemRNA_S-dermatodea_contig9475.17509.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: D8LJ71_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ71_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.010e-98
Identity = 209/429 (48.72%), Postives = 253/429 (58.97%), Query Frame = 1 
Query:   37 MLPRRGYEPVDDGEDNXXXXXXXXXXXXXXXXXXXRSAYTSIPTQNSPLALEDRLGREGVADGAELQNGGA--VIGDNAAPGGATAGGSXXXXXGDGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGA-GVGTTTAQHPGRLHEIPPLLLQVQ-----GQISGAHPQSQAHGYLDTHWEVDVPRRSIRFLASFLLMMSIMQQLLECLASISAAMGSPGTGKGD-------NTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMAIRIEVLVDSISGKIPFGDYGVGSPDDRDPDGYDSGGGDPGN--------------TGGEGRGEGEEGREPSPEEAQSSLMITAFTSFLAV 1236
            MLPRRGYEPVDD +++             XXXX  +   +++   + P            +DG   +  GA  V  D               XX DG MTVR+LDV+GQ Y L V PET+VRELK  LVD AGVE+ RQRII  GK+L D+DTLGGR ++DGAAIHLFQRPKV AA A GVGT +AQ PG LHE PP+LLQVQ     G+ +GAH            WEV+ PRR I FLAS L+++S++Q LLEC ASIS  +  PG            + HP LP EYW LV+GRT+SS+MGIVVG +GVRG+QSLNT TIR Y VGLVMCAIV MAIRIEV  D ++GKIPFGDYG+ SPD    +       DPG                GG G          + E AQSSL   AF++F++V
Sbjct:    1 MLPRRGYEPVDDVDEDSAPDLQAAAASERXXXXHVQGELSAL-CSSVPXXXXXXXXXXXSSDGVNSRTAGAGEVRSDX--------------XXXDGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKMLSDADTLGGRKISDGAAIHLFQRPKVAAAAAAGVGTASAQQPGNLHEFPPVLLQVQERGGNGEGAGAH------------WEVEAPRRKIMFLASILVLISVLQ-LLECXASISTVLSVPGAXXXXXXXXXXXSAHPSLPGEYWFLVKGRTLSSVMGIVVGTLGVRGSQSLNTHTIRWYFVGLVMCAIVAMAIRIEVFYDIVTGKIPFGDYGINSPDSSREN-------DPGEGXXXXXXXXXXXXXEGGPGA------HHETAEAAQSSLFFMAFSAFVSV 388
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A6H5JCL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL3_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.600e-76
Identity = 173/375 (46.13%), Postives = 213/375 (56.80%), Query Frame = 1 
Query:  376 RPETTVRELKGTLVDVAGVE--MSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGA-GVGTTTAQHPGRLHEIPPLLLQVQ---GQISGAHPQSQAHGYLDTHWEVDVPRRSIRFLASFLLMMSIMQQLLECLASISAAMGSPGTG-------KGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMAIRIEVLVDSISGKIPFGDYGVGSPDDRDPDGYDSGGGDPGNTGGEGRGEGEEG-REPSPEEAQSSLMITAFTSFLAV-----------------------------------------VVSGAIWLLCIRRVNAMRTEIAVHMDTRERQQR 1335
            RP TT+    G+ VD   V   +S Q       +L D+DTLG R ++DGAAIHLFQRPKV AA A GVGT +AQ PG L+E PP+LLQ     G   GA            HWEV+ PRR I FLAS L+++S++Q LLECLAS S  +  PG G        G + HP LP EYW LVRGRT+SS+MGIVVG +GV G+QSLNT TIR Y VGLVMCAIV MAIRIEV  D+++GKIPFGDYG  SPD    +    GG            EG  G    + EEAQSSL+  A ++F++V                                         VVSG +W++CIRRV+ MR  I++H+   ERQ+R
Sbjct:    8 RPTTTI----GSSVDTPHVPPCLSPQ-------MLSDADTLGSRKISDGAAIHLFQRPKVAAAAAAGVGTASAQQPGNLYEFPPVLLQPLERGGDREGA----------GAHWEVEAPRRKIMFLASILVLISVLQ-LLECLASTSTVLSVPGAGGGSTGGDNGGSAHPSLPGEYWFLVRGRTLSSVMGIVVGTLGVCGSQSLNTHTIRWYFVGLVMCAIVAMAIRIEVFYDTVTGKIPFGDYGTNSPDSSRENDPGEGGXXXXXXXXXXXDEGGPGAHHEAAEEAQSSLVFMALSAFVSVSPARARGRSVPGQFFFDVAVVPPRMKRKVVAPLRTGCEKRVVVSGTLWMICIRRVHDMRRVISIHVANWERQER 360
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A024U6A6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6A6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.390e-13
Identity = 69/255 (27.06%), Postives = 117/255 (45.88%), Query Frame = 1 
Query:  316 DGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGAGVGTTTAQHPG--------RLHEIPPLLLQVQGQISGAHPQSQAHGYLDTHWEVD---------VPRRSIRFLASFLLMMSIMQQLLEC--LASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMAIRI 1017
            DG + +RILD+ G+ + +   P+ +V +L   +   +GVE SRQR+I+ G++L  S TLG   V DG  IHLF R   T A +     ++            R+ E+      +        P   A    ++   +D         +  R ++  ASF+L++  M+ L +C  LA+ +A  A G     K +     L DE  V   G+ +    G+ VG +G + A   + +  R Y+VG++   ++ M  +I
Sbjct:  113 DGNLHIRILDLNGKVFPVSGSPDWSVNQLHVVVEAKSGVESSRQRLIYRGRVLDGSTTLGDSKVEDGHTIHLFVRQIPTVADSAPAVFSSDXXXXXXXXXLRRMRELEDHHRMIHFHAGPNDPIRSAVFPSESARRIDPILQDTPLGMAARRVKLWASFVLIIHTMKLLGQCAFLANFAAQNAAGMNDRMKKELEFTPLYDESSVATTGKLLGYAFGVYVGCVGFKAAHDTDLRPARQYIVGMMALGVLTMVEQI 367
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A3R6VSU5_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VSU5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.920e-12
Identity = 69/255 (27.06%), Postives = 116/255 (45.49%), Query Frame = 1 
Query:  316 DGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGAGVGTTTAQHPG--------RLHEIPPLLLQVQGQISGAHPQSQAHGYLDTHWEVD---------VPRRSIRFLASFLLMMSIMQQLLEC--LASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMAIRI 1017
            DG + +RILD+ G+ + +   P+ +V  L   +   +GVE SRQR+I+ G++L  S TLG   V DG  IHLF R   T A +     ++            R+ E+      +        P   A    ++   +D         +  R ++  ASF+L++  M+ L +C  LA+ +A  A G     K +     L DE  V   G+ +    G+ VG +G + A   + +  R Y+VG++   ++ M  +I
Sbjct:  237 DGNLHIRILDLNGKVFPVSGSPDWSVNLLHVVVEAKSGVESSRQRLIYRGRVLDGSTTLGDSKVEDGHTIHLFVRQIPTVADSAPAVFSSDXXXXXXXXXLRRMRELEDHHRMIHFHAGPNDPIRSAVFPSESARRIDPILQDTPLGMAARRVKLWASFVLIIHTMKLLGQCAFLANFAAQNAAGMNDRMKKELEFTPLYDESSVATTGKLLGYAFGVYVGCVGFKAAHDTDLRPARQYIVGMMALGVLTMVEQI 491
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A6H5JH29_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH29_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.720e-12
Identity = 64/145 (44.14%), Postives = 74/145 (51.03%), Query Frame = 1 
Query:   37 MLPRRGYEPVDDGEDNXXXXXXXXXXXXXXXXXXXRSAYTSIPTQNSPLALEDRLGREGVADGAELQNGGAVIGDNAAPGGATAGGSXXXXXGDGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKI 471
            MLPRRGYEPVDD +++       XXXXXXXXXXXX                    G       +     G V  D+                 DG MTVR+LDV+GQ Y L V PET+VRELK  LVD AGVE+ RQRII  GK+
Sbjct:    1 MLPRRGYEPVDDVDEDSAPDMQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGKGNGSDGVNSRTAEAGEVRSDD--------------EDDDGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKV 131
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A4D9DFL8_9STRA (Ubiquitin-like domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFL8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.610e-12
Identity = 70/267 (26.22%), Postives = 123/267 (46.07%), Query Frame = 1 
Query:  313 GDGEMTVRILDVQGQSYSLDVR-PETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGAGVGTTTAQHPGRLHEIPPLL--LQVQGQISGAHPQSQAHGYLDTHWEVDVPR--RSIRFLASFLLMMSIMQQLLECLASISA-AMGSPGTGK------------------GDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMAIRIEVLVDSIS 1041
            G  +  +RILD  G+ ++LD   P +T+  LK  +   +GV  ++QR+I+AG++L D  TL    V  G  IHLF RP     GA         PG +  +         +G + G       +G   +  + ++ R   S++  +S L+ +  MQ LL  L  ++A +MG+ G G+                                L+  + + + +G+ VG++G+R A +L  Q+ ++Y+ GL++     MA RI   V+S++
Sbjct:   30 GPPQFPIRILDTHGKEHALDAETPLSTIGALKVKVQAASGVPPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPXXXGA---------PGSIASVVNTTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGXXXXXXXXXXXXXXXXXXXXXXXXXSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVN 287
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BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A3L6VAJ6_9STRA (Cilia- and flagella-associated protein 53 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VAJ6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-11
Identity = 66/248 (26.61%), Postives = 117/248 (47.18%), Query Frame = 1 
Query:  316 DGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQR------PKVTAAGAGVGTTTAQHPGRLHEIPPLLLQVQGQ----ISGAHPQSQAHGYLDTHWE---VDVPRRSIRFLASFLLMMSIMQQLLEC--LASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMA 1008
            +G + +RILD+ G+ +S+    + +V +L   +   +GV+ +RQR+I+ G++L    +LG   V DG  IHLF R      P+ T++               H+   +     G     I  A   S++   +D   +   + +  R ++  ASF+L++  M+ L +C  LA+ +A  A G     K +  +  L DE  V   G+ V    G+ VG +G + A   + +  R Y+VG++   +  MA
Sbjct:  227 NGNLHIRILDLNGKVFSVSCSSDWSVDQLHAVVEAKSGVDAARQRLIYRGRVLDGDSSLGASKVEDGHTIHLFVRQVAPLVPETTSSDESEAALRRLRELEDHQHRVIHFHSGGPTNEPIRSAVFPSESARRMDPILQDSPLGMAARRVKLWASFVLIIHTMKLLGQCAFLANFAAQNAAGMNDRIKKELQYTPLYDETSVATVGKLVGYAFGVYVGCVGFKAAHDTDVRPARQYIVGMIALGMATMA 474
[Close]
BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A397DL36_9STRA (Cilia- and flagella-associated protein 53 n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DL36_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.770e-11
Identity = 66/248 (26.61%), Postives = 117/248 (47.18%), Query Frame = 1 
Query:  316 DGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQR------PKVTAAGAGVGTTTAQHPGRLHEIPPLLLQVQGQ----ISGAHPQSQAHGYLDTHWE---VDVPRRSIRFLASFLLMMSIMQQLLEC--LASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGMA 1008
            +G + +RILD+ G+ +S+    + +V +L   +   +GV+ +RQR+I+ G++L    +LG   V DG  IHLF R      P+ T++               H+   +     G     I  A   S++   +D   +   + +  R ++  ASF+L++  M+ L +C  LA+ +A  A G     K +  +  L DE  V   G+ V    G+ VG +G + A   + +  R Y+VG++   +  MA
Sbjct:  502 NGNLHIRILDLNGKVFSVSCSSDWSVDQLHAVVEAKSGVDAARQRLIYRGRVLDGDSSLGASKVEDGHTIHLFVRQVAPLVPETTSSDESEAALRRLRELEDHQHRVIHFHSGGPTNEPIRSAVFPSESARRMDPILQDSPLGMAARRVKLWASFVLIIHTMKLLGQCAFLANFAAQNAAGMNDRIKKELQYTPLYDETSVATVGKLVGYAFGVYVGCVGFKAAHDTDVRPARQYIVGMIALGMATMA 749
[Close]
BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A6A5ASK9_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASK9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.390e-11
Identity = 64/240 (26.67%), Postives = 114/240 (47.50%), Query Frame = 1 
Query:  316 DGEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQR------PKVTAAGAGVGTTTAQHPGRLHEIPPLLLQVQGQ----ISGAHPQSQAHGYLDTHWE---VDVPRRSIRFLASFLLMMSIMQQLLEC--LASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLV 984
            +G + +RILD+ G+ +S+    + +V +L   +   +GV+ +RQR+I+ G++L    +LG   V DG  IHLF R      P+ T++               H+   +     G     I  A   S++   +D   +   + +  R ++  ASF+L++  M+ L +C  LA+ +A  A G     K +  +  L DE  V   G+ V    G+ VG +G + A   + +  R Y+VG++
Sbjct:   46 NGNLHIRILDLNGKVFSVSCSSDWSVDQLHAVVEAKSGVDAARQRLIYRGRVLDGDSSLGASKVEDGHTIHLFVRQVAPLVPETTSSDESEAALRRLRELEDHQHRVIHFHSGGPTNEPIRSAVFPSESARRMDPILQDSPLGMAARRVKLWASFVLIIHTMKLLGQCAFLANFAAQNAAGMNDRIKKELQYTPLYDETSVATVGKLVGYAFGVYVGCVGFKAAHDTDVRPARQYIVGMI 285
[Close]
BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Match: A0A485LSP3_9STRA (Aste57867_25214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSP3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-10
Identity = 66/243 (27.16%), Postives = 111/243 (45.68%), Query Frame = 1 
Query:  319 GEMTVRILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSDTLGGRNVTDGAAIHLFQRPKVTAAGAGVGTTTAQHPGRLHEIPP-LLLQVQGQIS-----GAHPQSQAHGY----LDTHWEVDVPRRSIRFLASFLLMMSIMQQL--LECLASISA--AMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGAQSLNTQTIRIYLVGLVMCAIVGM 1005
            G + +RILD+ G+ + +    +  V  LK  +   +GV+ +RQR+I+ G++L  + +LG   V DG  IHLF R   T             P   +E P   ++   G  S        P   A       LDT   + +  R ++  ASF+L+++ M+ L     LA+ +A  A G     K +  +  L DE      G+  +   G+ VG +G + A   + + +R Y VG+V+  ++ M
Sbjct:  119 GNLHIRILDLNGKVFPVQCASDWLVDRLKSVVQAKSGVDEARQRLIYRGRVLEGTTSLGEYKVDDGHTIHLFVRQAPTVPDVVESAAATVGPRPDYEYPDHRVIHFHGAASDTVRTAVFPSESARRMDPIMLDT--PLGMAARRVKLWASFILIINTMKLLGQFAFLANYAAQQAAGMNERIKKEMEYTPLYDESTYATVGKLAAYAWGVYVGCVGFKAAHDTDLRPVRQYCVGIVVLGLLTM 359
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9475.17509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ71_ECTSI1.010e-9848.72Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6H5JCL3_9PHAE1.600e-7646.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U6A6_9STRA3.390e-1327.06Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A3R6VSU5_9STRA1.920e-1227.06Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A6H5JH29_9PHAE6.720e-1244.14Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A4D9DFL8_9STRA7.610e-1226.22Ubiquitin-like domain-containing protein n=4 Tax=M... [more]
A0A3L6VAJ6_9STRA2.560e-1126.61Cilia- and flagella-associated protein 53 (Fragmen... [more]
A0A397DL36_9STRA2.770e-1126.61Cilia- and flagella-associated protein 53 n=10 Tax... [more]
A0A6A5ASK9_9STRA3.390e-1126.67Ubiquitin-like domain-containing protein n=2 Tax=A... [more]
A0A485LSP3_9STRA1.270e-1027.16Aste57867_25214 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9475contigS-dermatodea_contig9475:1725..7169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score314.3
Seed ortholog evalue9.5e-83
Seed eggNOG ortholog2880.D8LJ71
EggNOG free text desc.Ubiquitin homologues
EggNOG OGs2E9AU@1,2SFPK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-02_004990.1
Exons5
Model size1550
Cds size1398
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.8922768-UTR-S-dermatodea_contig9475:1724..17601622925410.8922768-UTR-S-dermatodea_contig9475:1724..1760Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9475 1725..1760 +
1694079915.2297668-UTR-S-dermatodea_contig9475:1724..17601694079915.2297668-UTR-S-dermatodea_contig9475:1724..1760Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9475 1725..1760 +
1622925410.977084-UTR-S-dermatodea_contig9475:7053..71691622925410.977084-UTR-S-dermatodea_contig9475:7053..7169Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9475 7054..7169 +
1694079915.2931762-UTR-S-dermatodea_contig9475:7053..71691694079915.2931762-UTR-S-dermatodea_contig9475:7053..7169Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9475 7054..7169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.9035017-CDS-S-dermatodea_contig9475:1760..21921622925410.9035017-CDS-S-dermatodea_contig9475:1760..2192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 1761..2192 +
1694079915.2423005-CDS-S-dermatodea_contig9475:1760..21921694079915.2423005-CDS-S-dermatodea_contig9475:1760..2192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 1761..2192 +
1622925410.9184575-CDS-S-dermatodea_contig9475:4470..47671622925410.9184575-CDS-S-dermatodea_contig9475:4470..4767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 4471..4767 +
1694079915.2504516-CDS-S-dermatodea_contig9475:4470..47671694079915.2504516-CDS-S-dermatodea_contig9475:4470..4767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 4471..4767 +
1622925410.9326541-CDS-S-dermatodea_contig9475:5176..54581622925410.9326541-CDS-S-dermatodea_contig9475:5176..5458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 5177..5458 +
1694079915.2647915-CDS-S-dermatodea_contig9475:5176..54581694079915.2647915-CDS-S-dermatodea_contig9475:5176..5458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 5177..5458 +
1622925410.9490554-CDS-S-dermatodea_contig9475:5998..61841622925410.9490554-CDS-S-dermatodea_contig9475:5998..6184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 5999..6184 +
1694079915.274794-CDS-S-dermatodea_contig9475:5998..61841694079915.274794-CDS-S-dermatodea_contig9475:5998..6184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 5999..6184 +
1622925410.9649763-CDS-S-dermatodea_contig9475:6852..70531622925410.9649763-CDS-S-dermatodea_contig9475:6852..7053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 6853..7053 +
1694079915.2835984-CDS-S-dermatodea_contig9475:6852..70531694079915.2835984-CDS-S-dermatodea_contig9475:6852..7053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9475 6853..7053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9475.17509.1prot_S-dermatodea_contig9475.17509.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9475 1761..7053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9475.17509.1

>prot_S-dermatodea_contig9475.17509.1 ID=prot_S-dermatodea_contig9475.17509.1|Name=mRNA_S-dermatodea_contig9475.17509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=466bp
MLPRRGYEPVDDGEDNGTHEGTRANGGGRGGGLGGRSAYTSIPTQNSPLA
LEDRLGREGVADGAELQNGGAVIGDNAAPGGATAGGSGSGDGGDGEMTVR
ILDVQGQSYSLDVRPETTVRELKGTLVDVAGVEMSRQRIIWAGKILGDSD
TLGGRNVTDGAAIHLFQRPKVTAAGAGVGTTTAQHPGRLHEIPPLLLQVQ
GQISGAHPQSQAHGYLDTHWEVDVPRRSIRFLASFLLMMSIMQQLLECLA
SISAAMGSPGTGKGDNTHPVLPDEYWVLVRGRTVSSIMGIVVGVIGVRGA
QSLNTQTIRIYLVGLVMCAIVGMAIRIEVLVDSISGKIPFGDYGVGSPDD
RDPDGYDSGGGDPGNTGGEGRGEGEEGREPSPEEAQSSLMITAFTSFLAV
VVSGAIWLLCIRRVNAMRTEIAVHMDTRERQQREMREEQQRARGDAGDAR
LEEGAAAIAAGSPPS*
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mRNA from alignment at S-dermatodea_contig9475:1725..7169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9475.17509.1 ID=mRNA_S-dermatodea_contig9475.17509.1|Name=mRNA_S-dermatodea_contig9475.17509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5445bp|location=Sequence derived from alignment at S-dermatodea_contig9475:1725..7169+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTGCCTCGAGGGACATACCAACGCAGCCCGCAGCATGCTGCCTCGTCG
AGGTTACGAGCCGGTAGACGATGGCGAGGACAACGGGACCCACGAGGGCA
CGAGAGCGAACGGAGGAGGAAGAGGAGGAGGATTGGGAGGAAGGTCCGCT
TACACTTCAATCCCCACTCAAAACTCACCTCTCGCACTCGAAGACCGGCT
TGGACGAGAGGGCGTCGCCGACGGTGCTGAGCTTCAAAATGGCGGAGCCG
TCATTGGAGACAATGCCGCACCCGGCGGTGCCACTGCTGGAGGATCTGGA
TCGGGCGATGGTGGGGACGGTGAGATGACCGTGCGGATACTGGACGTGCA
GGGGCAATCGTACTCGCTGGACGTACGACCGGAGACTACGGTTCGCGAGC
TGAAGGGTACCCTCGTCGACGTCGCTGGGGTGGAAATGTCTCGACAGAGA
ATCATCTGGGCAGGGAAGGTGGGGGTGTCGATGGGGGATGCAGGGGCTTG
AAGAAGCCGCGGAGCGACCTTGGTGCTTCTTGCTGTGTTTTTTTGGGCTA
CTCAAGTTTTTTCCTGGTGTTCTGTTGTTGTCGCGGTGGAGTTTGCGCGC
GTTGACAGCAGAGCGTTGTTGTATTCTTGCCTTGGTGTGCCTGGGGAGAA
TGGATCCTCTCATGTTCCTCGTGTTCAGCGGAGACTCAAGCGCGCTCGCT
GCATACTCTGGTGTGTTTATCACAGCCCTTTTCTAAGGGGAGGGGGAGGG
TTCGAGCCTAGCCGTTCACTGGGATATGTCATCGCTCACGAGGACAGAGG
CCTGTCTGAATCTAGATACACCTACTTGTATGATAGGCGGGTGCTTCCTC
CTCCCAGAGAACAACAATAGAACTCTAGACTGATAAGAGTACAAGAGCTC
TGAGCTCCACCCTAGAATACAGCAGTACCAGTGCCTCGTGAGAGAGACCG
CCCCTCCCTCAGATCCTACAAAGTCATCGATGATGATGTAATATGCTTGT
ACTCAATATTTATAAAGTATCACATCATATCCTATCATATACTGCCATAC
GATAACTCTCAGTAAAATTCAACCGATAGTATCAGAACGGCCATCCTGAC
CATGGATGCATCGAGACACTCAGAAACGAGACCTACCTATAGTAACTGTA
TCCCGTACCAAGGCTCTGGAGTGTGTTGAGGGTCAAAAGGTGCACGTGCA
TAGGACGGCTGCTGTCATACTTTAAAGCGGATTCCTCCGATCACCAGCTA
GAAATGCCACTTGAGAAACACTCACGATGTTTCAAAATCCGGTCCTCAAC
GTAGGAGAGGTGGTTGTGGCCGCCAACGCAGGGCGCAAGAGCCTATTGCA
GCCCTCGCCGTTTTCACATTACCAGGACAGCCCGGAAGTCATCCAGGACT
CGATACAAAGTACATTCTTTGCTAGAAGCACACGAGTCGCCTTCACGGTT
TCCTCTTTTGCTTTGCCGTCCTGTCCATACCCCTAGCATCAAGACAGCCC
CCCCCCCCGGCACGTGTCCCGATTATATCCCGAACCGACCACCTACCCTG
TGCGCGAATGCTCCTATTTAATACTTCAAAGTATGATTTTCGTAGCTCAA
AACCCACCGCGCGCCCCGTGGTTGAACTCCCGGCAGAGTCGATATTTACT
TATTTTCTCTACCTCCGCCGGGAAAAGTGCGAGAGCGTGAGTAAGCAAAA
AAATCGGAGAAATCGGCGAGCTGTGGGAGTGCCGAACCCAATGGTTTCGC
GATAAAATTAAAGGCGAGAACCGGAGATAAGATAAGAGAGATGGGATGAC
CCCTCGTGACCACAGACGGACCTCGGAAAGCAAGTCTATCATATGTGTGC
CAACAACAACAACAACAGCATCAACAACCCCGCGCGGTAGGGGGTGGGAT
GTCCACTCCAGCAGTTCCGTACGCTCATCTGCGATACCACCCGAGGCCCC
ACGATTATCATCGCCGCCTTTTCCGCCACGCAGCGGCACAAGAGCAGCTA
ATCTTATCGCGTAACACGAGGTGTCTTATCATAACAGCTTCTTTGTCTAT
TGGTGCGTTTTGATTTTCCCTGCTGGTATTGCGCAAGCTTCGGAATAGAT
GATGCTGCAGCCTGTGGCAGCAATGCCGGCAAGTGCGGCGAAGTACTGCT
GTGTACTATGTTATCTGTGTACTGGCTGTGTACAGTCCTGAAATGCGAAA
CATGCCGTATGTGCGTCTACTTGCGCGTTTTATGGGTTGGCAGTTGCCGC
CAGAGTCGTGCCTGTTCATCGGGGCAGGCCGTGTCTATCTGACCCTATAC
TTTTAGAGCGATAAGGGCGATATATCCGAACCCGCTTGAGTATAGGGACG
CGACCCCACGTCATACACTCGCTGCAATCGACGCGCTGTCTTGGCACCTC
CTCCTCCCTCTACAAAGTCCAACGGCTGGCCAAAGTGGTGTCTGGCATCC
GCCTTGTATCTGTTGGTTATTTCCACAGCGTATCACATCACAGACAGTAG
TGACTACAGGATATGTATCTTAAGCTTGTTGAAGAGTGAGCATCACTGTT
ATACTACGCTATATGATACTAAGTACTAATTTAGTAGAAGCGCAACCGTT
AAAAAATCTCCTGCCCCCCGATACTTAATTTCAACAATTCGCCGACCCGC
CCTTCAAAACTAGCCCAACAAACGCCACGCGCGTGCGTTTTGCTCTTTTC
CTGCCACCCGGCACCCGCCAACGAAACGCCTTCCTCCGCCGCCAAGATTC
TGGGAGACTCGGACACCTTGGGCGGCCGCAACGTTACCGACGGAGCGGCC
ATCCACCTCTTCCAGCGACCAAAAGTCACCGCCGCCGGCGCGGGGGTCGG
AACTACAACCGCGCAGCACCCGGGAAGGCTGCACGAGATACCCCCCCTGC
TGCTGCAGGTGCAGGGGCAGATAAGCGGCGCTCACCCGCAGTCGCAGGCC
CACGGGTACCTCGATACGCACTGGGAGGTTGATGTGCCGCGGCGGAGCAT
TCGTTTCCTCGCCTCGTTTCTGCTCATGATGAGCATCATGCAGGTGGGTG
TAGGAGATGGGGTGAAGGGGGAGTGGGTGGATGGGTGGGAGGGGGGGCGG
GGGGTGCTTGTGCGTTTGCGTTTCTTTTTGGTCTGTTTAGTGCAACACTG
GGTATGCGGGAGGTCGTTTTTGTTGCGAACTGGTGGGAAGTGGCTTCGGT
TTCGGTGGGAGATGTTGCAGCGTGCGAAGATTGGTGTTCTGTTGACGATG
CTCTAAATCATGACACAATATCTTCCACCAATGCACGACACGGAGTTTCG
AAACACTTCACTTCAATACACAACACGAGGTACCTTTTTTGCGCGAACAA
TCTCGTCTTAAGCGTCTCGCCTATCCTCTATGCAAGCGAGCGCACGCGCG
TTGTCCTGACTGGCTCTCAAGCGAACGCCCTTCGCCCGCTCCTCGGACCG
AGCAGTTGCTGGAGTGCTTGGCGAGCATCTCGGCGGCGATGGGCTCCCCC
GGGACCGGAAAAGGGGACAACACGCACCCCGTACTCCCCGACGAGTACTG
GGTTCTGGTGCGAGGAAGAACTGTGTCGAGCATAATGGGCATCGTGGTGG
GGGTGATCGGTGTCCGGGGCGCTCAAAGCCTCAACACGCAGACAATCAGG
ATTTACCTGGTGGGCCTCGTGATGTGCGCGATCGTTGGGATGGCCATACG
GATCGAGGTGCTGGTGGACTCCATCTCGGGCAAGGTGGGGCCGGCTGCCT
GTCGGTATGAAGTCGCGCCCCTTGTCGGGTTTTGTTTTGCGTTCGGAGGC
GTTTTTGTGCATGCACACAATCCTGTTCAGGGGTGTGCTTTTGTGGTGGT
TCGGACGAATGGTGTGGCGGCGGCTCAGGCCTGACATGTTTATTGTATTG
GCGCGTTTGGACCCAGCTCATCTCGAAGTACTGTCGCGGAAATAGGGTCG
GGCCGCCTTTGGCTGATGCGTGGGTTGCAAAAGGAGCGTGTCGGCTGACG
TTGAGATGTCTTGTTGCCGTGGGACTTCTATCTTTTTCCAGAACGCTGCT
TGGCCTATGCGTTTATTGCAGGGGGAAGTTGGGGTGATGACTCGTGACGT
AACCAGGTGCTCCCGTGGTGTCATAGCCGGTTCGATATAGTTTGCGAACC
TCCCCCCCCCCCCCTGTCGCATTTCGCGTATGCGGTATCTGCGCTTTTGG
TCCTTCGGGTTCCTTTGCCGACTTATTGCTCCCCTCGGCTCTTTGCGCAA
CACACATTTTTTTCCTCCCAACAGATCCCTTTCGGAGATTACGGCGTAGG
GTCGCCAGACGATCGCGATCCAGACGGCTACGATTCGGGTGGTGGCGATC
CAGGAAACACAGGCGGGGAGGGGAGGGGGGAGGGAGAGGAGGGGCGCGAG
CCGTCACCAGAGGAGGCTCAGAGCAGTTTGATGATCACCGCCTTCACCTC
ATTCTTGGCGGTGAGGGTTTGTACGAGAAATGTACTTGTTTCGACACCGC
CGGGTTGCTGCTTTGTGCCCTACCCCCCATGGTTTTACTTTTGTTTACGC
AGAAACAAGTTCGTCGCCTTTGGCGCATGACCGCGTGGGAGCATTAGAAA
AATACTTCCAGCGTGCTCCGTGACCGTAGACAGACACGTGCAGTGTTTGA
CATATCCCATGGAGCAGGTGCTGCGGTCGAGAGCGCGTGCTACCGGATCT
GGCTCTCGCGGTTCTCCTTATGTACAGTTACACTCGTTCTGAGAAATAAT
GACTGCGAGACGCGTTGTGTCATTTCCTATTCGCCCCACTCCTCACCAGG
AACTCCGTATGCACCACGCGCAGCGTAGACGCCGGGGCACGCACTTTGCG
GGCCGCGATTGGAGAAACAACAACCTCCTGCGCTATTTGCAACTCGCCGC
GAAGGAAGCAAACTGTCCTTCAGGAACTTTCTCCGCGGCGGTGGCGCCGA
TGCACCGCTGAACATACACATCACTCTGTACACCCAAATGACGCAGCAAC
TTAAAATATCAAAAACACAAAGACGCTTGACAAAGATAGCATGATTCCCC
ACCTCCTCGCGTGCTCTCGATCCCGCGGACGCGCCCCCGTTAACATCCTG
CCCGGACAACCCTAACGACAAACGCCAGGTGGTGGTGTCCGGTGCGATTT
GGCTGCTCTGTATCCGGAGAGTCAACGCCATGCGGACAGAGATCGCCGTG
CACATGGACACTCGAGAAAGACAGCAAAGGGAGATGAGGGAAGAGCAGCA
ACGAGCGCGCGGAGACGCTGGCGACGCGAGGCTCGAAGAAGGGGCTGCGG
CGATAGCAGCAGGATCTCCACCATCGTGAGGACGGACGCCGATACTGCCC
TGCTGTTTGTGATACTGGCTTATGGCATGGTATATCGGTTACCCAAAGGG
TGTGGTTTCTGCTCGTTTGTTTGGCGCCACACGCGGGGGGCGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9475:1725..7169+

>mRNA_S-dermatodea_contig9475.17509.1 ID=mRNA_S-dermatodea_contig9475.17509.1|Name=mRNA_S-dermatodea_contig9475.17509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2796bp|location=Sequence derived from alignment at S-dermatodea_contig9475:1725..7169+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCCTCGTCGAGGTTACGAGCCGGTAGACGATGGCGAGGACAACGG
GACCCACGAGGGCACGAGAGCGAACGGAGGAGGAAGAGGAGGAGGATTGG
GAGGAAGGTCCGCTTACACTTCAATCCCCACTCAAAACTCACCTCTCGCA
CTCGAAGACCGGCTTGGACGAGAGGGCGTCGCCGACGGTGCTGAGCTTCA
AAATGGCGGAGCCGTCATTGGAGACAATGCCGCACCCGGCGGTGCCACTG
CTGGAGGATCTGGATCGGGCGATGGTGGGGACGGTGAGATGACCGTGCGG
ATACTGGACGTGCAGGGGCAATCGTACTCGCTGGACGTACGACCGGAGAC
TACGGTTCGCGAGCTGAAGGGTACCCTCGTCGACGTCGCTGGGGTGGAAA
TGTCTCGACAGAGAATCATCTGGGCAGGGAAGATGCTGCCTCGTCGAGGT
TACGAGCCGGTAGACGATGGCGAGGACAACGGGACCCACGAGGGCACGAG
AGCGAACGGAGGAGGAAGAGGAGGAGGATTGGGAGGAAGGTCCGCTTACA
CTTCAATCCCCACTCAAAACTCACCTCTCGCACTCGAAGACCGGCTTGGA
CGAGAGGGCGTCGCCGACGGTGCTGAGCTTCAAAATGGCGGAGCCGTCAT
TGGAGACAATGCCGCACCCGGCGGTGCCACTGCTGGAGGATCTGGATCGG
GCGATGGTGGGGACGGTGAGATGACCGTGCGGATACTGGACGTGCAGGGG
CAATCGTACTCGCTGGACGTACGACCGGAGACTACGGTTCGCGAGCTGAA
GGGTACCCTCGTCGACGTCGCTGGGGTGGAAATGTCTCGACAGAGAATCA
TCTGGGCAGGGAAGATTCTGGGAGACTCGGACACCTTGGGCGGCCGCAAC
GTTACCGACGGAGCGGCCATCCACCTCTTCCAGCGACCAAAAGTCACCGC
CGCCGGCGCGGGGGTCGGAACTACAACCGCGCAGCACCCGGGAAGGCTGC
ACGAGATACCCCCCCTGCTGCTGCAGGTGCAGGGGCAGATAAGCGGCGCT
CACCCGCAGTCGCAGGCCCACGGGTACCTCGATACGCACTGGGAGGTTGA
TGTGCCGCGGCGGAGCATTCGTTTCCTCGCCTCGTTTCTGCTCATGATGA
GCATCATGCAGATTCTGGGAGACTCGGACACCTTGGGCGGCCGCAACGTT
ACCGACGGAGCGGCCATCCACCTCTTCCAGCGACCAAAAGTCACCGCCGC
CGGCGCGGGGGTCGGAACTACAACCGCGCAGCACCCGGGAAGGCTGCACG
AGATACCCCCCCTGCTGCTGCAGGTGCAGGGGCAGATAAGCGGCGCTCAC
CCGCAGTCGCAGGCCCACGGGTACCTCGATACGCACTGGGAGGTTGATGT
GCCGCGGCGGAGCATTCGTTTCCTCGCCTCGTTTCTGCTCATGATGAGCA
TCATGCAGCAGTTGCTGGAGTGCTTGGCGAGCATCTCGGCGGCGATGGGC
TCCCCCGGGACCGGAAAAGGGGACAACACGCACCCCGTACTCCCCGACGA
GTACTGGGTTCTGGTGCGAGGAAGAACTGTGTCGAGCATAATGGGCATCG
TGGTGGGGGTGATCGGTGTCCGGGGCGCTCAAAGCCTCAACACGCAGACA
ATCAGGATTTACCTGGTGGGCCTCGTGATGTGCGCGATCGTTGGGATGGC
CATACGGATCGAGGTGCTGGTGGACTCCATCTCGGGCAAGCAGTTGCTGG
AGTGCTTGGCGAGCATCTCGGCGGCGATGGGCTCCCCCGGGACCGGAAAA
GGGGACAACACGCACCCCGTACTCCCCGACGAGTACTGGGTTCTGGTGCG
AGGAAGAACTGTGTCGAGCATAATGGGCATCGTGGTGGGGGTGATCGGTG
TCCGGGGCGCTCAAAGCCTCAACACGCAGACAATCAGGATTTACCTGGTG
GGCCTCGTGATGTGCGCGATCGTTGGGATGGCCATACGGATCGAGGTGCT
GGTGGACTCCATCTCGGGCAAGATCCCTTTCGGAGATTACGGCGTAGGGT
CGCCAGACGATCGCGATCCAGACGGCTACGATTCGGGTGGTGGCGATCCA
GGAAACACAGGCGGGGAGGGGAGGGGGGAGGGAGAGGAGGGGCGCGAGCC
GTCACCAGAGGAGGCTCAGAGCAGTTTGATGATCACCGCCTTCACCTCAT
TCTTGGCGATCCCTTTCGGAGATTACGGCGTAGGGTCGCCAGACGATCGC
GATCCAGACGGCTACGATTCGGGTGGTGGCGATCCAGGAAACACAGGCGG
GGAGGGGAGGGGGGAGGGAGAGGAGGGGCGCGAGCCGTCACCAGAGGAGG
CTCAGAGCAGTTTGATGATCACCGCCTTCACCTCATTCTTGGCGGTGGTG
GTGTCCGGTGCGATTTGGCTGCTCTGTATCCGGAGAGTCAACGCCATGCG
GACAGAGATCGCCGTGCACATGGACACTCGAGAAAGACAGCAAAGGGAGA
TGAGGGAAGAGCAGCAACGAGCGCGCGGAGACGCTGGCGACGCGAGGCTC
GAAGAAGGGGCTGCGGCGATAGCAGCAGGATCTCCACCATCGTGAGTGGT
GGTGTCCGGTGCGATTTGGCTGCTCTGTATCCGGAGAGTCAACGCCATGC
GGACAGAGATCGCCGTGCACATGGACACTCGAGAAAGACAGCAAAGGGAG
ATGAGGGAAGAGCAGCAACGAGCGCGCGGAGACGCTGGCGACGCGAGGCT
CGAAGAAGGGGCTGCGGCGATAGCAGCAGGATCTCCACCATCGTGA
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