mRNA_S-dermatodea_contig94730.17506.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94730.17506.1
Unique NamemRNA_S-dermatodea_contig94730.17506.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Match: A0A6H5JP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP14_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.950e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 VEDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRIAGLRQVS 171
            VEDV G++G  L +VG P  H  RLGFG+SLLFYGMAFRTFAFH+IVFRI+G +QVS
Sbjct:  161 VEDVLGSLGRWLQMVGRPPLHLARLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVS 217
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BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.220e-16
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 VEDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRIAGLRQVSAA 177
            VED+ G++G  L +VG P  H  RLGFG+SLLFYGMAFRTFAFH+IVFRI+G +QV  +
Sbjct:   11 VEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVS 69
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BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.660e-16
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 VEDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRIAGLRQVSAAV 180
            VED    + + + VVG+PV H  RLGFG+SLLFYGMAFRTFAFH+IVFRIAG++QV  AV
Sbjct:    9 VEDALVTMWSYMAVVGVPVLHLGRLGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAV 68
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BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-15
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 VEDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRIAGLRQVSAAV 180
            VED    + + ++ VG+PVFH  R GFG+SLLFYGMAFRTFAFH+IVFRIAG++QV  AV
Sbjct:  211 VEDALVTMWSHMVNVGVPVFHLGRFGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAV 270
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BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Match: A0A835Z464_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z464_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.030e-5
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 EDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRIAGLRQV 168
            E V GA+ N ++ V  PVF  L+  FG+S+LF+GM F++ A HII+F+I G ++V
Sbjct:   68 EHVEGAV-NAVVPVVAPVFFSLKALFGLSILFFGMTFKSLALHIILFQIVGFKKV 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94730.17506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP14_9PHAE6.950e-1770.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP3_ECTSI4.220e-1664.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTP1_ECTSI8.660e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP85_9PHAE1.040e-1565.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z464_9STRA4.030e-547.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94730contigS-dermatodea_contig94730:202..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.7777598-CDS-S-dermatodea_contig94730:201..3811622925410.7777598-CDS-S-dermatodea_contig94730:201..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94730 202..381 -
1694079915.1854784-CDS-S-dermatodea_contig94730:201..3811694079915.1854784-CDS-S-dermatodea_contig94730:201..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94730 202..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94730.17506.1prot_S-dermatodea_contig94730.17506.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94730 202..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94730.17506.1

>prot_S-dermatodea_contig94730.17506.1 ID=prot_S-dermatodea_contig94730.17506.1|Name=mRNA_S-dermatodea_contig94730.17506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
VEDVCGAIGNGLIVVGIPVFHFLRLGFGISLLFYGMAFRTFAFHIIVFRI
AGLRQVSAAV
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mRNA from alignment at S-dermatodea_contig94730:202..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94730.17506.1 ID=mRNA_S-dermatodea_contig94730.17506.1|Name=mRNA_S-dermatodea_contig94730.17506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig94730:202..381- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGGATGTGTGTGGAGCAATCGGGAACGGTCTGATCGTGGTGGGGAT
TCCCGTGTTTCACTTTCTGCGGCTGGGCTTCGGGATTTCCCTCCTCTTCT
ACGGCATGGCGTTCCGCACTTTCGCGTTCCACATCATAGTCTTTCGAATC
GCGGGATTGCGCCAGGTGAGTGCCGCCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94730:202..381-

>mRNA_S-dermatodea_contig94730.17506.1 ID=mRNA_S-dermatodea_contig94730.17506.1|Name=mRNA_S-dermatodea_contig94730.17506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig94730:202..381- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGGATGTGTGTGGAGCAATCGGGAACGGTCTGATCGTGGTGGGGAT
TCCCGTGTTTCACTTTCTGCGGCTGGGCTTCGGGATTTCCCTCCTCTTCT
ACGGCATGGCGTTCCGCACTTTCGCGTTCCACATCATAGTCTTTCGAATC
GCGGGATTGCGCCAGGTGAGTGCCGCCGTGGTGGAGGATGTGTGTGGAGC
AATCGGGAACGGTCTGATCGTGGTGGGGATTCCCGTGTTTCACTTTCTGC
GGCTGGGCTTCGGGATTTCCCTCCTCTTCTACGGCATGGCGTTCCGCACT
TTCGCGTTCCACATCATAGTCTTTCGAATCGCGGGATTGCGCCAGGTGAG
TGCCGCCGTG
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