mRNA_S-dermatodea_contig94707.17505.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94707.17505.1
Unique NamemRNA_S-dermatodea_contig94707.17505.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.410e-20
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VASSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            VA SDVWLADMNYRVAVTQQARVWKGVSAKLGDLFG MKDIEVERR
Sbjct:  310 VAGSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGRMKDIEVERR 355
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: A0A6H5KEN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.800e-20
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VASSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            VA SD+WLADMNYRVAVTQQARVWKGVSAKLGDLFG MKDIEVERR
Sbjct:  352 VAGSDIWLADMNYRVAVTQQARVWKGVSAKLGDLFGKMKDIEVERR 397
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: A0A836CKX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 SDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            SDVW+ DM YRVAVTQQ       SA+LG LFG+MKD+EV RR
Sbjct:  253 SDVWITDMAYRVAVTQQLAACDAASAQLGALFGHMKDLEVNRR 295
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: A0A835YTK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 ASSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            A+ D+WLADMNYR+AV QQ + W G+++ +    G ++D+E++RR
Sbjct:  623 AAPDMWLADMNYRMAVQQQRQSWGGMTSVMACTLGRLRDLELDRR 667
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: D7FN77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN77_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 8.560e-6
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   13 DVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            DVW    +Y+ AV  Q   W  V+AKLG++F  MKD+E ERR
Sbjct:  220 DVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERR 261
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: W7T3J3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3J3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   13 DVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            D+WL DM YRVAV  Q  +W+     L DLF  MK +EV RR
Sbjct:  249 DLWLLDMQYRVAVELQKTIWQETQHHLHDLFRRMKTLEVNRR 290
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BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Match: A0A6H5L7U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.620e-5
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   13 DVWLADMNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR 138
            DVW    +Y+ AV  Q   W  V+AKLG++F  MK++E ERR
Sbjct:  220 DVWFLFCSYQTAVVHQKEAWDAVTAKLGEVFAKMKNLEGERR 261
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94707.17505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LNW9_ECTSI1.410e-2095.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEN9_9PHAE1.800e-2093.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKX7_9STRA3.410e-965.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTK9_9STRA5.100e-746.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FN77_ECTSI8.560e-650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T3J3_9STRA3.000e-552.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6H5L7U6_9PHAE5.620e-547.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94707contigS-dermatodea_contig94707:100..237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D8LNW9
EggNOG OGs28I9V@1,2QQK9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_005520.1
Exons1
Model size138
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.7291243-UTR-S-dermatodea_contig94707:99..1291622925410.7291243-UTR-S-dermatodea_contig94707:99..129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94707 100..129 +
1694079915.1614292-UTR-S-dermatodea_contig94707:99..1291694079915.1614292-UTR-S-dermatodea_contig94707:99..129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig94707 100..129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.7416244-CDS-S-dermatodea_contig94707:129..2371622925410.7416244-CDS-S-dermatodea_contig94707:129..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94707 130..237 +
1694079915.1757388-CDS-S-dermatodea_contig94707:129..2371694079915.1757388-CDS-S-dermatodea_contig94707:129..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94707 130..237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94707.17505.1prot_S-dermatodea_contig94707.17505.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94707 130..237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94707.17505.1

>prot_S-dermatodea_contig94707.17505.1 ID=prot_S-dermatodea_contig94707.17505.1|Name=mRNA_S-dermatodea_contig94707.17505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
MNYRVAVTQQARVWKGVSAKLGDLFGNMKDIEVERR
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mRNA from alignment at S-dermatodea_contig94707:100..237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94707.17505.1 ID=mRNA_S-dermatodea_contig94707.17505.1|Name=mRNA_S-dermatodea_contig94707.17505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig94707:100..237+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCGTCCTCCGACGTGTGGCTCGCCGACATGAACTACCGCGTGGCGGT
AACGCAGCAGGCTAGGGTGTGGAAAGGAGTGAGCGCCAAGCTGGGCGACC
TCTTCGGCAACATGAAGGACATCGAGGTCGAGCGGAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig94707:100..237+

>mRNA_S-dermatodea_contig94707.17505.1 ID=mRNA_S-dermatodea_contig94707.17505.1|Name=mRNA_S-dermatodea_contig94707.17505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig94707:100..237+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACTACCGCGTGGCGGTAACGCAGCAGGCTAGGGTGTGGAAAGGAGT
GAGCGCCAAGCTGGGCGACCTCTTCGGCAACATGAAGGACATCGAGGTCG
AGCGGAGAATGAACTACCGCGTGGCGGTAACGCAGCAGGCTAGGGTGTGG
AAAGGAGTGAGCGCCAAGCTGGGCGACCTCTTCGGCAACATGAAGGACAT
CGAGGTCGAGCGGAGA
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