mRNA_S-dermatodea_contig94702.17504.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94702.17504.1
Unique NamemRNA_S-dermatodea_contig94702.17504.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: D7G1A9_ECTSI (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A9_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 3.500e-75
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 1 
Query:    7 KVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPPTVVSGPEILERFVGSSEANIRALFDYPPDVPGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGGDRVRDSVVNQL 381
            +VC+PLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPP VVSGPEILERFVGSSEANIRALFDYPPDVPGG ++EQAEALHVIVMDEFDS+GQRRGGGDDGGDRVRDSVVNQL
Sbjct:  204 RVCVPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPPAVVSGPEILERFVGSSEANIRALFDYPPDVPGGDESEQAEALHVIVMDEFDSIGQRRGGGDDGGDRVRDSVVNQL 328
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A835ZD05_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD05_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.690e-56
Identity = 91/127 (71.65%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    7 KVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPPTVVSGPEILERFVGSSEANIRALFDYPPDVPGGGDAEQAEALHVIVMDEFDSVGQRR--GGGDDGGDRVRDSVVNQL 381
            +V +PL+AP DLLEDLG++PV GLLLHGPPGCGK+LLARRL+  LTPRPPT VSGPEIL+RFVGSSEAN+R+LFD+PP +P G    + EALHVIV+DEFD++  RR  GGG DG +RVRDSVVNQL
Sbjct:   11 RVWVPLSAPKDLLEDLGVAPVSGLLLHGPPGCGKSLLARRLTEILTPRPPTFVSGPEILDRFVGSSEANVRSLFDFPPPLPAGVPGAE-EALHVIVLDEFDAIAGRRSAGGGGDGSERVRDSVVNQL 136
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A7S2CI58_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI58_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.700e-46
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    7 KVCIPLAAPA---DLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPPTVVSGPEILERFVGSSEANIRALFDYPPDVPGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGG-----DRVRDSVVNQL 381
            +V IP+ A     +LL DLG+ PV+GLLLHGPPGCGK+LLARRLS  LTPRPP+ VSGPE+L+RFVGSSEAN+R LF   P  P     E  EALH+IV DEFD++G  RGGG   G     D VRDSVVNQL
Sbjct:   36 RVMIPIVASTRDPELLADLGVRPVKGLLLHGPPGCGKSLLARRLSKILTPRPPSFVSGPELLDRFVGSSEANVRELFSSAPPCP-----EMPEALHIIVFDEFDALGSPRGGGVQSGGGGTVDSVRDSVVNQL 163
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A6U1VPK6_TRICV (Vesicle-fusing ATPase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1VPK6_TRICV)

HSP 1 Score: 153 bits (386), Expect = 1.070e-44
Identity = 86/148 (58.11%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:    1 KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV--------PGGGDAEQAEALHVIVMDEFDSVGQRRGG------------GDDGGDRVRDSVVNQL 381
            K +V +PLAAP  LL +L ISPVRGLLLHG PGCGKTLLAR L   L+P RP TVVSGPEI++RFVGSSEAN+R +FD PPD+        P  GDA    ALHV++MDEFD++ + RGG            GD G    RDSVVNQL
Sbjct:   47 KRRVWVPLAAPPSLLRELNISPVRGLLLHGAPGCGKTLLARGLGRILSPARPTTVVSGPEIMDRFVGSSEANLREIFDNPPDIYDTYRIDQPDNGDAIAKAALHVVIMDEFDAIARSRGGSGGXXXSSKNSQGDAG--VARDSVVNQL 192
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A835YZG3_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZG3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.350e-43
Identity = 88/157 (56.05%), Postives = 103/157 (65.61%), Query Frame = 1 
Query:    7 KVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPRPPTVVSGPEILERFVGSSE------------------------------ANIRALFDYPPDVPGGGDAEQAEALHVIVMDEFDSVGQRRG--GGDDGGDRVRDSVVNQL 381
            +V +PL AP  LL+DLGI+PV GLLLHGPPGCGK+LLARRLSA L+PRPP+ VSGPEI++RFVGSSE                              ANIR+LF YPP  P GG     +ALHVIV+DEFD++   R   GG D G+RVRDSVVNQL
Sbjct:   72 RVWLPLCAPQPLLDDLGIAPVIGLLLHGPPGCGKSLLARRLSALLSPRPPSFVSGPEIMDRFVGSSERHKRCRSLPPTSASQSRTFCALLHCRTNAQANIRSLFKYPPR-PLGGTPYPDDALHVIVLDEFDAIAGSRSDRGGGDAGERVRDSVVNQL 227
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A7S4HYK5_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYK5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.630e-43
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 1 
Query:    1 KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV--------PGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGGDR-----VRDSVVNQL 381
            K +V +PLAAP  LL +LGI+PVRGLL +G PGCGKTLLAR L   L+P RP TVVSGPEI+++FVGSSEAN+RA+FD PPD+        P  G A +  +LHV+VMDEFD+V + RGGG   GD+      RDSVVNQL
Sbjct:  272 KRRVWVPLAAPPSLLSELGINPVRGLLFYGGPGCGKTLLARSLGKILSPARPVTVVSGPEIMDKFVGSSEANLRAIFDQPPDIYDSYRIGQPDDGKALEKASLHVVVMDEFDAVARSRGGGSGKGDQGDAGVARDSVVNQL 412
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A1E7ELW0_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELW0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.680e-41
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1 
Query:    1 KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV----------PGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGGDR-----VRDSVVNQL 381
            K ++  PLAAP  LL++LGI P RGLLL+G PGCGKTLLA  L + L+P RP TVV+GPEI+++FVGSSE N+R LFD PPD+           G  DA    A+HVIVMDEFD+V + RGG D  G +      RDSVVNQL
Sbjct:   12 KRRIWTPLAAPPQLLKELGIQPTRGLLLYGKPGCGKTLLASTLGSMLSPFRPITVVNGPEIMDKFVGSSEKNLRELFDNPPDIYDKFKQNCTDAGMVDAMNRAAIHVIVMDEFDAVARSRGGNDGKGGQGDSGVARDSVVNQL 154
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A1E7FEJ6_9STRA (Vesicle-fusing ATPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEJ6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.990e-40
Identity = 79/141 (56.03%), Postives = 97/141 (68.79%), Query Frame = 1 
Query:    1 KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV--------PGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGGDR-----VRDSVVNQL 381
            K ++  PLAAP  LL +LGI P RGLLL+G PGCGK+LLA  L + L+P RP TV+SGPEIL++FVGSSE N+R +FD PPD+          GG+   + ALHVIVMDEFD+V + RGG D  G +      RDSVVNQL
Sbjct:   29 KRRIWTPLAAPPKLLAELGIHPARGLLLYGKPGCGKSLLASTLGSMLSPFRPITVISGPEILDKFVGSSEKNLRDIFDNPPDIYDKFRLDETDGGELINSAALHVIVMDEFDAVARSRGGSDGKGGQGDAGVARDSVVNQL 169
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: A0A7S2YHQ5_9STRA (Vesicle-fusing ATPase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHQ5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.590e-40
Identity = 81/141 (57.45%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:    1 KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV--------PGGGDAEQAEALHVIVMDEFDSVGQRRGGGDDGGDR-----VRDSVVNQL 381
            K +V  PLAAP  LL++LGISPVRGLLL+G PGCGKTLLAR+L   L+P RP TVVSGPE+L++FVGSSE N+R +FD PPD+        P  G A  + ALHV+VMDEFD++ + RGG             RDSVVNQL
Sbjct:   65 KRRVWTPLAAPPQLLQELGISPVRGLLLYGRPGCGKTLLARQLGQILSPLRPITVVSGPEVLDKFVGSSEKNLREIFDNPPDIYDYFRIGEPDNGAAVASAALHVVVMDEFDAIARARGGXXXXXXXXXXGVARDSVVNQL 205
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BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Match: K0T1G7_THAOC (Vesicle-fusing ATPase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1G7_THAOC)

HSP 1 Score: 150 bits (379), Expect = 7.260e-40
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 1 
Query:    7 KVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTP-RPPTVVSGPEILERFVGSSEANIRALFDYPPDV-----PGGGDAEQAEALHVIVMDEFDSVGQRRGG----GDDGGDR--VRDSVVNQL 381
            +V IPLAAP  LL +LGI PVRGLLL+G PGCGKTLLAR+L + L+P RP T+VSGPEIL++FVGSSE N+R +FD PPD+        G+    +A+HVIV+DEFD++ +RRGG    G D GD    RDSVVNQL
Sbjct:  264 RVWIPLAAPPTLLNELGIQPVRGLLLYGSPGCGKTLLARKLGSILSPCRPITIVSGPEILDKFVGSSEQNLREIFDKPPDLYPQYKKNYGEPLATQAIHVIVLDEFDAISRRRGGSGGKGSDQGDAGVARDSVVNQL 400
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94702.17504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1A9_ECTSI3.500e-7594.40Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZD05_9STRA6.690e-5671.65Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2CI58_9STRA3.700e-4662.41Vesicle-fusing ATPase (Fragment) n=1 Tax=Dictyocha... [more]
A0A6U1VPK6_TRICV1.070e-4458.11Vesicle-fusing ATPase (Fragment) n=1 Tax=Trieres c... [more]
A0A835YZG3_9STRA3.350e-4356.05Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S4HYK5_9STRA9.630e-4359.57Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella... [more]
A0A1E7ELW0_9STRA9.680e-4155.94Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilari... [more]
A0A1E7FEJ6_9STRA2.990e-4056.03Vesicle-fusing ATPase n=1 Tax=Fragilariopsis cylin... [more]
A0A7S2YHQ5_9STRA3.590e-4057.45Vesicle-fusing ATPase n=1 Tax=Amphiprora paludosa ... [more]
K0T1G7_THAOC7.260e-4059.85Vesicle-fusing ATPase n=1 Tax=Thalassiosira oceani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94702contigS-dermatodea_contig94702:123..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue2.5e-62
Seed eggNOG ortholog2880.D7G1A9
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0002790,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006897,GO:0006909,GO:0006914,GO:0006919,GO:0006928,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009306,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0040011,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098657,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsCOG0464@1,KOG0741@2759
EC3.6.4.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAAA ATpase
Ec32 orthologEc-12_005180.1
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.6976707-CDS-S-dermatodea_contig94702:122..5031622925410.6976707-CDS-S-dermatodea_contig94702:122..503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94702 123..503 +
1694079915.1459448-CDS-S-dermatodea_contig94702:122..5031694079915.1459448-CDS-S-dermatodea_contig94702:122..503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94702 123..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94702.17504.1prot_S-dermatodea_contig94702.17504.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94702 123..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94702.17504.1

>prot_S-dermatodea_contig94702.17504.1 ID=prot_S-dermatodea_contig94702.17504.1|Name=mRNA_S-dermatodea_contig94702.17504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
KWKVCIPLAAPADLLEDLGISPVRGLLLHGPPGCGKTLLARRLSAALTPR
PPTVVSGPEILERFVGSSEANIRALFDYPPDVPGGGDAEQAEALHVIVMD
EFDSVGQRRGGGDDGGDRVRDSVVNQL
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mRNA from alignment at S-dermatodea_contig94702:123..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94702.17504.1 ID=mRNA_S-dermatodea_contig94702.17504.1|Name=mRNA_S-dermatodea_contig94702.17504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at S-dermatodea_contig94702:123..503+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAATGGAAGGTGTGCATCCCGCTAGCGGCGCCGGCGGACCTGCTAGAAGA
CCTAGGCATCTCTCCCGTTCGTGGTCTGCTTCTGCACGGCCCTCCAGGGT
GCGGGAAAACCCTGCTCGCGAGGCGGCTCTCGGCGGCGCTGACGCCCCGC
CCCCCGACCGTGGTGTCCGGCCCCGAGATCCTGGAGCGTTTCGTCGGGTC
GTCGGAGGCGAACATCCGCGCGCTGTTCGACTACCCCCCGGATGTGCCGG
GCGGCGGCGACGCGGAGCAGGCGGAGGCGCTGCACGTGATCGTCATGGAC
GAGTTCGACAGCGTCGGGCAAAGGCGCGGCGGCGGGGATGACGGCGGGGA
TCGCGTGCGTGACAGCGTCGTGAACCAGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94702:123..503+

>mRNA_S-dermatodea_contig94702.17504.1 ID=mRNA_S-dermatodea_contig94702.17504.1|Name=mRNA_S-dermatodea_contig94702.17504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig94702:123..503+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAATGGAAGGTGTGCATCCCGCTAGCGGCGCCGGCGGACCTGCTAGAAGA
CCTAGGCATCTCTCCCGTTCGTGGTCTGCTTCTGCACGGCCCTCCAGGGT
GCGGGAAAACCCTGCTCGCGAGGCGGCTCTCGGCGGCGCTGACGCCCCGC
CCCCCGACCGTGGTGTCCGGCCCCGAGATCCTGGAGCGTTTCGTCGGGTC
GTCGGAGGCGAACATCCGCGCGCTGTTCGACTACCCCCCGGATGTGCCGG
GCGGCGGCGACGCGGAGCAGGCGGAGGCGCTGCACGTGATCGTCATGGAC
GAGTTCGACAGCGTCGGGCAAAGGCGCGGCGGCGGGGATGACGGCGGGGA
TCGCGTGCGTGACAGCGTCGTGAACCAGTTGAAATGGAAGGTGTGCATCC
CGCTAGCGGCGCCGGCGGACCTGCTAGAAGACCTAGGCATCTCTCCCGTT
CGTGGTCTGCTTCTGCACGGCCCTCCAGGGTGCGGGAAAACCCTGCTCGC
GAGGCGGCTCTCGGCGGCGCTGACGCCCCGCCCCCCGACCGTGGTGTCCG
GCCCCGAGATCCTGGAGCGTTTCGTCGGGTCGTCGGAGGCGAACATCCGC
GCGCTGTTCGACTACCCCCCGGATGTGCCGGGCGGCGGCGACGCGGAGCA
GGCGGAGGCGCTGCACGTGATCGTCATGGACGAGTTCGACAGCGTCGGGC
AAAGGCGCGGCGGCGGGGATGACGGCGGGGATCGCGTGCGTGACAGCGTC
GTGAACCAGTTG
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