mRNA_S-dermatodea_contig94669.17498.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94669.17498.1
Unique NamemRNA_S-dermatodea_contig94669.17498.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.540e-35
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AY+DD+ +  + +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 289
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.870e-35
Identity = 63/144 (43.75%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  +++TA+ +Q  P L +E   +G+I+N  K  ALPPPGH
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGH 649
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.960e-35
Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  + +TA+ +Q +P L  E   +G+I+N  K  ALPPPGH
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGH 676
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.450e-35
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++G RR I  K GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  + +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 372
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.080e-34
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  + +TA+ +Q +P + +E   +G+I+N  K  ALPPPGH
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGH 197
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.280e-34
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDV-GMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y++ GV L AYMDD+  +  + +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 282
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.510e-34
Identity = 61/144 (42.36%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D ++AFN+ +R  ++ +  +  P +  ++A+CY   PA  I+TM++GERR I  K+GVQQGD +GP LFC  L  ++ K RA+Y+  GV L AYMDD+ +    +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGH 274
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BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.600e-34
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY   PA  I+ M++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  + +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 650
[Close]
BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.770e-33
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +N  N+ +R  ++ +  +  P L   +A+CY   PA  I+ M++GERR I  K+GVQQGD +GP LFC  L  ++ K RA Y+  GV L AYMDD+ +  + +TA+++Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:  184 VVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYE-LPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326
[Close]
BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 8.490e-33
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 1 
Query:    1 LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMETGERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMDDVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGH 432
            ++  D +NAFN+ +R  ++ +  +  P L  ++A+CY    A  I+ M++GERR I  K+GVQQGD +GP LF   L  ++ K RA Y+  GV L AYMDD+ +  + +TA+ +Q +P L +E   +G+I+N  K  ALPPPGH
Sbjct:   95 VVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 238
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94669.17498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE1.540e-3543.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE4.870e-3543.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE4.960e-3543.75Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KR59_9PHAE5.450e-3543.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE1.080e-3443.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE1.280e-3443.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0V7_9PHAE2.510e-3442.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE2.600e-3443.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE2.770e-3341.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDD0_9PHAE8.490e-3341.67Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94669contigS-dermatodea_contig94669:84..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog400682.PAC_15708731
Preferred nameCWC27
KEGG koko:K01802,ko:K12737
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0885@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.0417254-CDS-S-dermatodea_contig94669:83..5241622925410.0417254-CDS-S-dermatodea_contig94669:83..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94669 84..524 -
1694079914.6586406-CDS-S-dermatodea_contig94669:83..5241694079914.6586406-CDS-S-dermatodea_contig94669:83..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94669 84..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94669.17498.1prot_S-dermatodea_contig94669.17498.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94669 84..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94669.17498.1

>prot_S-dermatodea_contig94669.17498.1 ID=prot_S-dermatodea_contig94669.17498.1|Name=mRNA_S-dermatodea_contig94669.17498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=147bp
LIGLDFANAFNSVRRKPMLEELQRRAPGLAPFVAKCYGGQPADVIFTMET
GERRVIPSKTGVQQGDALGPALFCMPLGTVLEKTRAVYESKGVELFAYMD
DVGMALRELTAQTVQAVPFLREESSGIGVILNGAKCVALPPPGHVPT
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mRNA from alignment at S-dermatodea_contig94669:84..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94669.17498.1 ID=mRNA_S-dermatodea_contig94669.17498.1|Name=mRNA_S-dermatodea_contig94669.17498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at S-dermatodea_contig94669:84..524- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGATTGGCCTGGACTTCGCGAACGCCTTCAACTCAGTACGGAGGAAACC
CATGTTGGAGGAACTCCAAAGGCGCGCACCAGGCCTGGCCCCTTTCGTGG
CTAAATGCTATGGAGGACAACCGGCGGATGTGATTTTCACGATGGAAACC
GGGGAAAGGAGGGTCATCCCGTCGAAAACGGGGGTGCAACAGGGAGACGC
CCTTGGCCCGGCTTTATTCTGCATGCCGCTGGGAACGGTTTTGGAAAAGA
CCAGGGCCGTATACGAGTCGAAAGGGGTTGAGCTCTTCGCCTACATGGAC
GACGTGGGAATGGCGCTGCGTGAGCTCACAGCACAAACGGTTCAAGCGGT
TCCTTTCCTACGGGAGGAGTCTAGCGGGATCGGCGTGATCCTCAACGGAG
CAAAGTGCGTGGCCCTACCTCCGCCGGGGCATGTCCCGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94669:84..524-

>mRNA_S-dermatodea_contig94669.17498.1 ID=mRNA_S-dermatodea_contig94669.17498.1|Name=mRNA_S-dermatodea_contig94669.17498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at S-dermatodea_contig94669:84..524- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGATTGGCCTGGACTTCGCGAACGCCTTCAACTCAGTACGGAGGAAACC
CATGTTGGAGGAACTCCAAAGGCGCGCACCAGGCCTGGCCCCTTTCGTGG
CTAAATGCTATGGAGGACAACCGGCGGATGTGATTTTCACGATGGAAACC
GGGGAAAGGAGGGTCATCCCGTCGAAAACGGGGGTGCAACAGGGAGACGC
CCTTGGCCCGGCTTTATTCTGCATGCCGCTGGGAACGGTTTTGGAAAAGA
CCAGGGCCGTATACGAGTCGAAAGGGGTTGAGCTCTTCGCCTACATGGAC
GACGTGGGAATGGCGCTGCGTGAGCTCACAGCACAAACGGTTCAAGCGGT
TCCTTTCCTACGGGAGGAGTCTAGCGGGATCGGCGTGATCCTCAACGGAG
CAAAGTGCGTGGCCCTACCTCCGCCGGGGCATGTCCCGACGCTGATTGGC
CTGGACTTCGCGAACGCCTTCAACTCAGTACGGAGGAAACCCATGTTGGA
GGAACTCCAAAGGCGCGCACCAGGCCTGGCCCCTTTCGTGGCTAAATGCT
ATGGAGGACAACCGGCGGATGTGATTTTCACGATGGAAACCGGGGAAAGG
AGGGTCATCCCGTCGAAAACGGGGGTGCAACAGGGAGACGCCCTTGGCCC
GGCTTTATTCTGCATGCCGCTGGGAACGGTTTTGGAAAAGACCAGGGCCG
TATACGAGTCGAAAGGGGTTGAGCTCTTCGCCTACATGGACGACGTGGGA
ATGGCGCTGCGTGAGCTCACAGCACAAACGGTTCAAGCGGTTCCTTTCCT
ACGGGAGGAGTCTAGCGGGATCGGCGTGATCCTCAACGGAGCAAAGTGCG
TGGCCCTACCTCCGCCGGGGCATGTCCCGACG
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