mRNA_S-dermatodea_contig9462.17496.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9462.17496.1
Unique NamemRNA_S-dermatodea_contig9462.17496.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.920e-18
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   10 VAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGDPR 174
            VA+HEG+VD   VLL Y A  +QRNR +ETPLHLACRQ H  VVRLLLENG DPR
Sbjct:  124 VASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPR 178          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: UPI001EB06605 (transient receptor potential cation channel subfamily A member 1 homolog n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB06605)

HSP 1 Score: 53.5 bits (127), Expect = 9.000e-7
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   10 VAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            +AA  G  +   +L+ +++HA++    + +PL+LAC+ GH RVV+LLLEN GD
Sbjct:   11 LAASSGCEETCNILIRFDSHAKEDLHHKTSPLNLACKNGHLRVVKLLLENDGD 63          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A6G0XTM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTM4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.690e-6
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   10 VAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            VAA + NV++A +LL Y  +   +N+   T LHLAC+QG T ++R+L+++  D
Sbjct:   60 VAAQKNNVEMAILLLKYGVNVNAQNKLGSTALHLACKQGFTEIIRILIDHHAD 112          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: UPI00189B10F9 (ankyrin repeat and sterile alpha motif domain-containing protein 1B-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189B10F9)

HSP 1 Score: 51.2 bits (121), Expect = 2.900e-6
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    1 PPQVAAHEGNVDVAKVLLGYNAHAEQR-NRAEETPLHLACRQGHTRVVRLLLENG 162
            P  +AA  G +D   +L+G  AH+ QR   A  +PLHLA R GH +VVRLLL+ G
Sbjct:   35 PLDLAAQYGRLDSVALLVGAQAHSLQRLATAHHSPLHLAARNGHRQVVRLLLDRG 89          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A7G5CC34_WOLPI (Ankyrin repeat domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7G5CC34_WOLPI)

HSP 1 Score: 50.8 bits (120), Expect = 7.970e-6
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   10 VAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            VA    N ++ KV + Y+A+   +N+  ETPLHLA R  H ++++LL +NG D
Sbjct:  162 VAVVRNNPEMVKVFIKYHANVNVQNKQGETPLHLAIRFKHPKIIKLLYDNGAD 214          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: B3ETS5_AMOA5 (Uncharacterized protein n=2 Tax=Candidatus Amoebophilus asiaticus TaxID=281120 RepID=B3ETS5_AMOA5)

HSP 1 Score: 50.8 bits (120), Expect = 8.040e-6
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   13 AAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLE 156
            AA  GNV++ K+LL   A   +R+ + ETP HLA R+GH  V++LLL+
Sbjct:  298 AAEGGNVELVKLLLHQGASIRERDDSGETPFHLAAREGHLEVIKLLLQ 345          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A179HKX2_PURLI (Ankyrin repeat protein n=3 Tax=Purpureocillium lilacinum TaxID=33203 RepID=A0A179HKX2_PURLI)

HSP 1 Score: 50.8 bits (120), Expect = 8.100e-6
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   10 VAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            VA +   VD+A +L+  ++    R R + TPLHLA R GH R+V +LL+ G D
Sbjct:  155 VARYPREVDIAAMLVNASSDIAPRQRPDGTPLHLAARSGHVRMVEMLLDRGAD 207          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A7S1F5B3_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F5B3_NOCSC)

HSP 1 Score: 49.7 bits (117), Expect = 2.060e-5
Identity = 22/56 (39.29%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 PPQVAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            P  +AA EG +   +VL+G NA  + +N A +T LHLA R  H  + ++L+++G D
Sbjct:  351 PLMIAAREGKLKALEVLVGKNARHDLKNVAGDTALHLAARNFHVEICKVLVQHGAD 406          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A7S0YSS4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YSS4_9CRYP)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:    1 PPQVAAHEGNVDVAKVLLGYNAHAEQ--RNRAEETPLHLACRQGHTRVVRLLLENGGDPR 174
            P  VAAHEG V++A +L+       Q   + A   PLHLA   GHT + RLL+E G D R
Sbjct:   94 PLCVAAHEGRVELAALLIASGVDCNQPCASEAAPAPLHLAAAGGHTGMARLLVEFGADRR 153          
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Match: A0A8H6D025_9HYPO (Allantoate permease n=1 Tax=Fusarium mundagurra TaxID=1567541 RepID=A0A8H6D025_9HYPO)

HSP 1 Score: 49.3 bits (116), Expect = 2.850e-5
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    1 PPQVAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLLLENGGD 168
            P  + A+ G+V V ++L    A   ++N+A +TPL +AC QGHT   R LLE G  
Sbjct:  539 PIHLGAYGGSVQVLELLTTGEADLNKQNKAGQTPLGIACEQGHTEAARWLLEQGSQ 594          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9462.17496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI8.920e-1870.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001EB066059.000e-743.40transient receptor potential cation channel subfam... [more]
A0A6G0XTM4_9STRA1.690e-641.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00189B10F92.900e-649.09ankyrin repeat and sterile alpha motif domain-cont... [more]
A0A7G5CC34_WOLPI7.970e-641.51Ankyrin repeat domain-containing protein n=2 Tax=c... [more]
B3ETS5_AMOA58.040e-647.92Uncharacterized protein n=2 Tax=Candidatus Amoebop... [more]
A0A179HKX2_PURLI8.100e-643.40Ankyrin repeat protein n=3 Tax=Purpureocillium lil... [more]
A0A7S1F5B3_NOCSC2.060e-539.29Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S0YSS4_9CRYP2.300e-545.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8H6D025_9HYPO2.850e-541.07Allantoate permease n=1 Tax=Fusarium mundagurra Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9462contigS-dermatodea_contig9462:7764..7940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7G7Z2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.8704438-CDS-S-dermatodea_contig9462:7763..79401622925409.8704438-CDS-S-dermatodea_contig9462:7763..7940Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9462 7764..7940 +
1694079914.5439856-CDS-S-dermatodea_contig9462:7763..79401694079914.5439856-CDS-S-dermatodea_contig9462:7763..7940Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9462 7764..7940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9462.17496.1prot_S-dermatodea_contig9462.17496.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9462 7764..7940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9462.17496.1

>prot_S-dermatodea_contig9462.17496.1 ID=prot_S-dermatodea_contig9462.17496.1|Name=mRNA_S-dermatodea_contig9462.17496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
PPQVAAHEGNVDVAKVLLGYNAHAEQRNRAEETPLHLACRQGHTRVVRLL
LENGGDPRL
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mRNA from alignment at S-dermatodea_contig9462:7764..7940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9462.17496.1 ID=mRNA_S-dermatodea_contig9462.17496.1|Name=mRNA_S-dermatodea_contig9462.17496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig9462:7764..7940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCGCAGGTGGCCGCGCACGAAGGCAATGTAGACGTTGCCAAGGTCCT GCTCGGATACAACGCGCACGCGGAGCAAAGGAACAGGGCCGAAGAGACCC CGCTTCACCTCGCCTGCAGGCAAGGGCATACGCGAGTTGTGCGCCTCTTG CTGGAAAATGGGGGCGATCCAAGGTTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9462:7764..7940+

>mRNA_S-dermatodea_contig9462.17496.1 ID=mRNA_S-dermatodea_contig9462.17496.1|Name=mRNA_S-dermatodea_contig9462.17496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig9462:7764..7940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCGCAGGTGGCCGCGCACGAAGGCAATGTAGACGTTGCCAAGGTCCT
GCTCGGATACAACGCGCACGCGGAGCAAAGGAACAGGGCCGAAGAGACCC
CGCTTCACCTCGCCTGCAGGCAAGGGCATACGCGAGTTGTGCGCCTCTTG
CTGGAAAATGGGGGCGATCCAAGGTTACCACCGCAGGTGGCCGCGCACGA
AGGCAATGTAGACGTTGCCAAGGTCCTGCTCGGATACAACGCGCACGCGG
AGCAAAGGAACAGGGCCGAAGAGACCCCGCTTCACCTCGCCTGCAGGCAA
GGGCATACGCGAGTTGTGCGCCTCTTGCTGGAAAATGGGGGCGATCCAAG
GTTA
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