mRNA_S-dermatodea_contig94616.17494.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94616.17494.1
Unique NamemRNA_S-dermatodea_contig94616.17494.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: D7FKB4_ECTSI (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-19
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK 135
            DCIAVG+S S F L+GKMPGWD+ SYGYHSDDGGAFHDAGSMLFK
Sbjct:  500 DCIAVGVSESRFPLKGKMPGWDSRSYGYHSDDGGAFHDAGSMLFK 544
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.670e-17
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK 135
            +CIA+GLS   F L+GKMPGWD+ SYGYHSDDGGAFH+AGSMLF+
Sbjct: 1294 ECIAIGLSEEQFTLQGKMPGWDSCSYGYHSDDGGAFHNAGSMLFR 1338
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A7S2MZU7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MZU7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.720e-13
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSML 129
            DC+A+GLS + F  + KMPGWD  SYGYH DDGG FHD G M+
Sbjct:  115 DCVAIGLSTASFATQRKMPGWDEQSYGYHGDDGGIFHDGGEMI 157
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: I2CQC1_NANGC (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQC1_NANGC)

HSP 1 Score: 62.4 bits (150), Expect = 2.700e-11
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAG 120
            +C+AVGL+   F L G MPGWDA+SY +HSDDGG FH  G
Sbjct:   29 NCVAVGLASGNFPLEGYMPGWDASSYAFHSDDGGIFHGTG 68
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A4D9CNA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNA6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAG 120
            +C+AVGL+   F L G MPGWDA+SY +HSDDGG FH  G
Sbjct:  552 NCVAVGLASGNFPLEGYMPGWDASSYAFHSDDGGIFHGTG 591
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A1Z5JW83_FISSO (B30.2/SPRY domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW83_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 5.210e-10
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK 135
            DCI +G+    FH   +M GWD  S+GYHSDDGG +H+ G M+ K
Sbjct:  317 DCIVIGVGTRKFHFSNRMAGWDDQSFGYHSDDGGVYHNQGQMIRK 361
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A1Z5JU35_FISSO (B30.2/SPRY domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU35_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 5.210e-10
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK 135
            DCI +G+    FH   +M GWD  S+GYHSDDGG +H+ G M+ K
Sbjct:  319 DCIVIGVGTRKFHFSNRMAGWDDQSFGYHSDDGGVYHNQGQMIRK 363
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A7S2R1I2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1I2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-9
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGK-MPGWDANSYGYHSDDGGAFHDAGSML 129
            +C+AVG+S   F +  K MPGWD  SY YHSDDGG FH  G M+
Sbjct:   46 ECVAVGISTEEFDMDKKIMPGWDKQSYAYHSDDGGIFHAKGEMI 89
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A7S3RFF7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RFF7_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 1.810e-9
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGS 123
            DC+AVGL    F L G+ PGWD+ S+GYHSDDG AFH  G+
Sbjct:  247 DCVAVGLGSRDFPLDGRQPGWDSASFGYHSDDGQAFHGHGA 287
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BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Match: A0A8J2SGA7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGA7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 CIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK 135
            C+A+G +R+GF     MPGWDA S+GYH DDGG FH  G+ + +
Sbjct:  271 CVAIGCARAGFDAGRLMPGWDAESWGYHGDDGGRFHGDGAAVAR 314
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94616.17494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKB4_ECTSI3.180e-1984.44B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
A0A835ZEA9_9STRA8.670e-1775.56B30.2/SPRY domain-containing protein n=1 Tax=Tribo... [more]
A0A7S2MZU7_9STRA4.720e-1362.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
I2CQC1_NANGC2.700e-1162.50B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A4D9CNA6_9STRA3.820e-1062.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5JW83_FISSO5.210e-1051.11B30.2/SPRY domain-containing protein n=1 Tax=Fistu... [more]
A0A1Z5JU35_FISSO5.210e-1051.11B30.2/SPRY domain-containing protein n=1 Tax=Fistu... [more]
A0A7S2R1I2_9STRA1.620e-956.82Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3RFF7_EMIHU1.810e-960.98Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A8J2SGA7_9STRA3.410e-952.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94616contigS-dermatodea_contig94616:73..210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue8.4e-16
Seed eggNOG ortholog2880.D7FKB4
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG1477@1,KOG1477@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.7450678-CDS-S-dermatodea_contig94616:72..2101622925409.7450678-CDS-S-dermatodea_contig94616:72..210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94616 73..210 -
1694079914.4621577-CDS-S-dermatodea_contig94616:72..2101694079914.4621577-CDS-S-dermatodea_contig94616:72..210Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94616 73..210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94616.17494.1prot_S-dermatodea_contig94616.17494.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94616 73..210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94616.17494.1

>prot_S-dermatodea_contig94616.17494.1 ID=prot_S-dermatodea_contig94616.17494.1|Name=mRNA_S-dermatodea_contig94616.17494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
DCIAVGLSRSGFHLRGKMPGWDANSYGYHSDDGGAFHDAGSMLFK*
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mRNA from alignment at S-dermatodea_contig94616:73..210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94616.17494.1 ID=mRNA_S-dermatodea_contig94616.17494.1|Name=mRNA_S-dermatodea_contig94616.17494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig94616:73..210- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTGCATTGCGGTGGGGCTAAGCAGATCAGGGTTCCACCTGAGGGGCAA
GATGCCCGGCTGGGACGCGAATTCCTACGGCTACCACAGCGATGACGGCG
GAGCGTTTCACGATGCTGGGAGCATGCTTTTCAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig94616:73..210-

>mRNA_S-dermatodea_contig94616.17494.1 ID=mRNA_S-dermatodea_contig94616.17494.1|Name=mRNA_S-dermatodea_contig94616.17494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig94616:73..210- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTGCATTGCGGTGGGGCTAAGCAGATCAGGGTTCCACCTGAGGGGCAA
GATGCCCGGCTGGGACGCGAATTCCTACGGCTACCACAGCGATGACGGCG
GAGCGTTTCACGATGCTGGGAGCATGCTTTTCAAGTGAGACTGCATTGCG
GTGGGGCTAAGCAGATCAGGGTTCCACCTGAGGGGCAAGATGCCCGGCTG
GGACGCGAATTCCTACGGCTACCACAGCGATGACGGCGGAGCGTTTCACG
ATGCTGGGAGCATGCTTTTCAAGTGA
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