mRNA_S-dermatodea_contig9454.17490.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9454.17490.1
Unique NamemRNA_S-dermatodea_contig9454.17490.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9454.17490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9454contigS-dermatodea_contig9454:180..2430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001070.1
Exons4
Model size464
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9454.17490.1prot_S-dermatodea_contig9454.17490.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9454 180..2430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.3918862-CDS-S-dermatodea_contig9454:179..3631622925409.3918862-CDS-S-dermatodea_contig9454:179..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 180..363 -
1694079914.2071705-CDS-S-dermatodea_contig9454:179..3631694079914.2071705-CDS-S-dermatodea_contig9454:179..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 180..363 -
1622925409.4053495-CDS-S-dermatodea_contig9454:1654..17291622925409.4053495-CDS-S-dermatodea_contig9454:1654..1729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 1655..1729 -
1694079914.2217174-CDS-S-dermatodea_contig9454:1654..17291694079914.2217174-CDS-S-dermatodea_contig9454:1654..1729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 1655..1729 -
1622925409.4214687-CDS-S-dermatodea_contig9454:2025..21001622925409.4214687-CDS-S-dermatodea_contig9454:2025..2100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 2026..2100 -
1694079914.2355654-CDS-S-dermatodea_contig9454:2025..21001694079914.2355654-CDS-S-dermatodea_contig9454:2025..2100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 2026..2100 -
1622925409.4318502-CDS-S-dermatodea_contig9454:2302..24301622925409.4318502-CDS-S-dermatodea_contig9454:2302..2430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 2303..2430 -
1694079914.244668-CDS-S-dermatodea_contig9454:2302..24301694079914.244668-CDS-S-dermatodea_contig9454:2302..2430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9454 2303..2430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9454.17490.1

>prot_S-dermatodea_contig9454.17490.1 ID=prot_S-dermatodea_contig9454.17490.1|Name=mRNA_S-dermatodea_contig9454.17490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
IHVSVVSRPLSLRRSEIRQVPLARSSFTMKICIVKRLLERLPRFVTSLAD
FKFHLASEAILPDYQRARTSIELSDPWIAVSSPLLLFAACERLYMKMDHL
EDKLGEMLSQVAKDLVKVRAGLQIEYYEEQPAPDQQRIGSSDSGGAHGMM
TGI*
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mRNA from alignment at S-dermatodea_contig9454:180..2430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9454.17490.1 ID=mRNA_S-dermatodea_contig9454.17490.1|Name=mRNA_S-dermatodea_contig9454.17490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2251bp|location=Sequence derived from alignment at S-dermatodea_contig9454:180..2430- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATACATGTATCCGTCGTAAGTCGTCCCCTTTCGCTCCGACGGTCTGAGAT
ACGCCAAGTGCCGCTGGCACGATCATCGTTCACCATGAAGATATGCATTG
TGAAGCGCCTTCTGGAGAGATTGCCACGGTACACACACACATTTATATAT
ACCTTCAATGATACTGTAGCCTCTTGCACTTGGATTGAAGAATACGTATA
GAGCTCTACACCAGGTTCACAAGTACAGCAGTATTGCGTAGTTCAACATC
AAGTGCCTCAGTTTGCGCCGCTGCCTGCTGATTGACGCTGCTGTGTGCGA
TGTCGACTCCTGCCTACTGCATCGGGATAGCTTCGTTACCTCCCTGGCTG
ATTTCAAGTTCCATCTGGCATCCGAGGCAATCCTCCCGGACTATCAGCGT
GCAAGGTGAAGCGCGCCGACAAGTGCTGTCTGCTGTCTTGTGTCACCTGC
CGGAAACCAGGCCGACCTTGTCAAGGGAACAGGCACTACCGAGGGTACTC
TCTGCTTTACTGCTATGATACTATGATGTGTGTCCGTGTGTACCGCAGTC
CTTGTGCTGGTCGTTTTTCCGCCCAATGTGAGTTCAAGTTCATGTAGTTG
TCGTGGGATGCTCCATCGAAGACGCCGTAATTATAGTGCCGCAATTTACC
GTTGTCCAACCATGTGATCTCTCGTGTCTACATCGCACGCTCCAATTGCA
GGACGTCAATCGAGCTCTCGGACCCGTGGATAGCGGTATCTTCTCCCTTA
CTTCTCTTTGCTGCCTGCGAGCGACTGTGAGTGAGCCGGGGACGATGAAC
ACAATATAGCTTTTCTAGGTCCGAAACATAAGTGGTATGCTGCACGTAGT
GTTTTGCCCCAACCAGCCGTCACCACGTGACTCTTCGATTCTGAGCACCA
TCTCTACGGGGCATTCTTCACGAGCCAAAAATAGTACCGGAAGAAGCGGA
AAATTACCGAAAGGTCGCGGTGCTTCCTGCCTCTTTAAAGTGCTTTTTCC
AGGAAAGGTCGTCCGTTCTTCACGAGTCCAGAGTCGAAATTAAAATTTAC
ATTTGTGCATATGTATACTGACAGAAATTAAAATTTACATTTGTGCATAC
AGTATGCATACTGCTGTATCATCATATTTTGTAATGAGTGTATTATATGC
ATATCATATAATATGATTGACACACAACACAGCACGTCACAAATTTTAGT
ATAATGAAGACAAAATTATTTGTACATGCATGGCCCTCCGAAGTGTTCGC
TCTGCCGGAGCCACGCCCGCCACGTCCGACTGTGTGCGCTAGTCTGTTGA
CGGAAGACGCCAACCCTCTCGGCGCGGGCAAAGAGGTAGGCAGGGCAGGC
GCGTCTGTACTCCCCACAATCCGCACGCTCAATTGGAAGGCATGACAAGA
GTGCGGCAGCTGGGGCAACGCCTGAGCCATATCGCAAGACTCGCGATACT
GCTGTACCGATGATCATCTCGTCTTCTTCATCCTCTTCCCCCTGTCGCTC
CGCCCGCCGCTGGTGCTCGGCCACGGCATCAGTCGTATCGAGCCAGTCGG
GATGGGCTCGCCGAGACAGTCACTGCCTCCTCACCGCGCTGCGCTGCGCC
GCCATAGGGCGGCGCATGATGTCTACCAAGCAGCTAGAGTGAGCGCCGGT
TGAACGGAACAAGAGACTCGTGCCTTTCCGAGTATTGCAGACACGCGACA
GGCGGCAGACCGTTTACTGGAGCGAGCTGCGATACACAAGACAACACCAG
CGACTGTTGCCTGTAGCCAAGCCGTTCATTCGACGCGTCGGTGCGCCGTG
CAAGAGCGGGTGTACCCGTCCTGTGTGCAAGGCAGTCTATGATCCAAAAT
CTGAAATCTGGTCTGCGTTGGCACACTTTCGACCAGGTAATCTGTTTTCC
AGGTCGAAAGTTGGCCTCTTTCAGAGGGAAAAAAGCTGAATCTTTCATAC
CCCAAACTTTTGGTAGTTTCCCGCTTCTTTCGGTACTATTTTTTGTTCGT
GAAGAACGCCCCTAACGACGATCGTTTTAAACCCAAAAACGACCTCTTGG
CGTCTCCCCGCTTTCAGGTACATGAAGATGGACCATCTTGAGGACAAACT
CGGTGAAATGCTTTCCCAGGTGGCCAAAGATCTCGTGAAGGTTCGTGCAG
GTTTGCAAATCGAGTACTACGAGGAACAGCCCGCGCCTGATCAACAAAGG
ATCGGTAGCTCAGATTCCGGAGGAGCCCATGGGATGATGACAGGTATTTA
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig9454:180..2430-

>mRNA_S-dermatodea_contig9454.17490.1 ID=mRNA_S-dermatodea_contig9454.17490.1|Name=mRNA_S-dermatodea_contig9454.17490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig9454:180..2430- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATACATGTATCCGTCGTAAGTCGTCCCCTTTCGCTCCGACGGTCTGAGAT
ACGCCAAGTGCCGCTGGCACGATCATCGTTCACCATGAAGATATGCATTG
TGAAGCGCCTTCTGGAGAGATTGCCACGATACATGTATCCGTCGTAAGTC
GTCCCCTTTCGCTCCGACGGTCTGAGATACGCCAAGTGCCGCTGGCACGA
TCATCGTTCACCATGAAGATATGCATTGTGAAGCGCCTTCTGGAGAGATT
GCCACGCTTCGTTACCTCCCTGGCTGATTTCAAGTTCCATCTGGCATCCG
AGGCAATCCTCCCGGACTATCAGCGTGCAAGCTTCGTTACCTCCCTGGCT
GATTTCAAGTTCCATCTGGCATCCGAGGCAATCCTCCCGGACTATCAGCG
TGCAAGGACGTCAATCGAGCTCTCGGACCCGTGGATAGCGGTATCTTCTC
CCTTACTTCTCTTTGCTGCCTGCGAGCGACTGACGTCAATCGAGCTCTCG
GACCCGTGGATAGCGGTATCTTCTCCCTTACTTCTCTTTGCTGCCTGCGA
GCGACTGTACATGAAGATGGACCATCTTGAGGACAAACTCGGTGAAATGC
TTTCCCAGGTGGCCAAAGATCTCGTGAAGGTTCGTGCAGGTTTGCAAATC
GAGTACTACGAGGAACAGCCCGCGCCTGATCAACAAAGGATCGGTAGCTC
AGATTCCGGAGGAGCCCATGGGATGATGACAGGTATTTAGGTACATGAAG
ATGGACCATCTTGAGGACAAACTCGGTGAAATGCTTTCCCAGGTGGCCAA
AGATCTCGTGAAGGTTCGTGCAGGTTTGCAAATCGAGTACTACGAGGAAC
AGCCCGCGCCTGATCAACAAAGGATCGGTAGCTCAGATTCCGGAGGAGCC
CATGGGATGATGACAGGTATTTAG
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