mRNA_S-dermatodea_contig9452.17488.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9452.17488.1
Unique NamemRNA_S-dermatodea_contig9452.17488.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9452.17488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9452contigS-dermatodea_contig9452:533..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.2972176-CDS-S-dermatodea_contig9452:532..8321622925409.2972176-CDS-S-dermatodea_contig9452:532..832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9452 533..832 +
1694079914.1487288-CDS-S-dermatodea_contig9452:532..8321694079914.1487288-CDS-S-dermatodea_contig9452:532..832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9452 533..832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.3111076-UTR-S-dermatodea_contig9452:832..10041622925409.3111076-UTR-S-dermatodea_contig9452:832..1004Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9452 833..1004 +
1694079914.1591942-UTR-S-dermatodea_contig9452:832..10041694079914.1591942-UTR-S-dermatodea_contig9452:832..1004Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9452 833..1004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9452.17488.1prot_S-dermatodea_contig9452.17488.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9452 533..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9452.17488.1

>prot_S-dermatodea_contig9452.17488.1 ID=prot_S-dermatodea_contig9452.17488.1|Name=mRNA_S-dermatodea_contig9452.17488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
DDGPIPTFRRGGRGLEPSLRGARGHVPPRRDAAAVCLGVHDNCRTSSSRS
PKPGQCWRSRVVDRDPPEVQGRILNAVKPPHCSCKGQVGESHTRRIEST*
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mRNA from alignment at S-dermatodea_contig9452:533..1004+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9452.17488.1 ID=mRNA_S-dermatodea_contig9452.17488.1|Name=mRNA_S-dermatodea_contig9452.17488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at S-dermatodea_contig9452:533..1004+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGACGGGCCTATCCCCACCTTTCGCCGTGGCGGCCGTGGATTGGAGCC
GTCGCTCCGCGGCGCTCGCGGCCATGTGCCTCCTCGCCGAGATGCTGCTG
CTGTCTGTCTTGGTGTTCATGATAACTGCCGGACTAGTAGTAGCCGCTCG
CCTAAACCTGGGCAGTGCTGGAGGAGCCGCGTGGTGGACAGAGACCCTCC
AGAGGTCCAGGGGCGAATATTGAATGCGGTGAAACCTCCCCACTGCAGCT
GCAAAGGCCAGGTTGGCGAGTCGCATACGCGAAGAATCGAGAGCACCTAG
CCGACCCAACGACAACGCTACGGCGGTACACTGTGGGTAGCTTCGGAAAG
AATCGGCCGTGGGTAGTTTTGCTTTTGGCCGCTGTCTTTCGACGGTGGGG
CTCTAACGAGTTCCTGCTAAGGACGGAAGCTGACTATACCTCTTTGCACT
CCACTCAGCACTGCCTCTCTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9452:533..1004+

>mRNA_S-dermatodea_contig9452.17488.1 ID=mRNA_S-dermatodea_contig9452.17488.1|Name=mRNA_S-dermatodea_contig9452.17488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9452:533..1004+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGACGGGCCTATCCCCACCTTTCGCCGTGGCGGCCGTGGATTGGAGCC
GTCGCTCCGCGGCGCTCGCGGCCATGTGCCTCCTCGCCGAGATGCTGCTG
CTGTCTGTCTTGGTGTTCATGATAACTGCCGGACTAGTAGTAGCCGCTCG
CCTAAACCTGGGCAGTGCTGGAGGAGCCGCGTGGTGGACAGAGACCCTCC
AGAGGTCCAGGGGCGAATATTGAATGCGGTGAAACCTCCCCACTGCAGCT
GCAAAGGCCAGGTTGGCGAGTCGCATACGCGAAGAATCGAGAGCACCTAG
GACGACGGGCCTATCCCCACCTTTCGCCGTGGCGGCCGTGGATTGGAGCC
GTCGCTCCGCGGCGCTCGCGGCCATGTGCCTCCTCGCCGAGATGCTGCTG
CTGTCTGTCTTGGTGTTCATGATAACTGCCGGACTAGTAGTAGCCGCTCG
CCTAAACCTGGGCAGTGCTGGAGGAGCCGCGTGGTGGACAGAGACCCTCC
AGAGGTCCAGGGGCGAATATTGAATGCGGTGAAACCTCCCCACTGCAGCT
GCAAAGGCCAGGTTGGCGAGTCGCATACGCGAAGAATCGAGAGCACCTAG
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