mRNA_S-dermatodea_contig1286.1748.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1286.1748.1
Unique NamemRNA_S-dermatodea_contig1286.1748.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1286.1748.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.150e-27
Identity = 80/186 (43.01%), Postives = 97/186 (52.15%), Query Frame = 1 
Query:   13 GAFPGAVTQEFALEPAIDQLLKYEGYDFAHPILAAPLRPMVAHEVSLEAMRQAEASNQS-QDEADTAANAAEDSLAAPSSGARSPGDATRXXXXXXXXXXXXDKRTLFPLEKGTRKPSTDGAGASTGGEKVGDGKPNLATVATADDRKRGAASASKEEFPDRPPHVVPFWNRTNWIAGREDGTGAR 567
            GA  GA  QEFALEPAIDQLLKYEGY+FAHP LA PLRPMVAHEV+LE MR+AEA+  S +++A  A N A D  AA SS  R  G                  ++    ++  R                                   A +  ++   DRP H VPFWNRTNWI+GR+DGTG+R
Sbjct:  784 GAATGA--QEFALEPAIDQLLKYEGYEFAHPRLAPPLRPMVAHEVALEGMRKAEAAKLSHREDAAFAKNEASDPFAAASSATRGTGHPFTTKAGKSSGAQAASGKSTSEADENGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTKFRDSENDRPAHPVPFWNRTNWISGRKDGTGSR 967
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1286.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE9.150e-2743.01AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1286contigS-dermatodea_contig1286:12180..14997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D7FQ00
Preferred nameCHTF18
KEGG koko:K11269
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035753,GO:0035825,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045005,GO:0045935,GO:0046483,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098813,GO:0140013,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:1903046,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.ATP binding
EggNOG OGsKOG1969@1,KOG1969@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size610
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1286.1748.1prot_S-dermatodea_contig1286.1748.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1286 12180..14995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.0757651-CDS-S-dermatodea_contig1286:12179..122481622924265.0757651-CDS-S-dermatodea_contig1286:12179..12248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 12180..12248 +
1694079135.8296733-CDS-S-dermatodea_contig1286:12179..122481694079135.8296733-CDS-S-dermatodea_contig1286:12179..12248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 12180..12248 +
1622924265.0854845-CDS-S-dermatodea_contig1286:14037..141421622924265.0854845-CDS-S-dermatodea_contig1286:14037..14142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 14038..14142 +
1694079135.8415153-CDS-S-dermatodea_contig1286:14037..141421694079135.8415153-CDS-S-dermatodea_contig1286:14037..14142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 14038..14142 +
1622924265.0956535-CDS-S-dermatodea_contig1286:14563..149951622924265.0956535-CDS-S-dermatodea_contig1286:14563..14995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 14564..14995 +
1694079135.8510725-CDS-S-dermatodea_contig1286:14563..149951694079135.8510725-CDS-S-dermatodea_contig1286:14563..14995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 14564..14995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1286.1748.1

>prot_S-dermatodea_contig1286.1748.1 ID=prot_S-dermatodea_contig1286.1748.1|Name=mRNA_S-dermatodea_contig1286.1748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
YGSGGAFPGAVTQEFALEPAIDQLLKYEGYDFAHPILAAPLRPMVAHEVS
LEAMRQAEASNQSQDEADTAANAAEDSLAAPSSGARSPGDATRRSPATGG
KERPADKRTLFPLEKGTRKPSTDGAGASTGGEKVGDGKPNLATVATADDR
KRGAASASKEEFPDRPPHVVPFWNRTNWIAGREDGTGARGAGRTKDATAT
AK
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mRNA from alignment at S-dermatodea_contig1286:12180..14997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1286.1748.1 ID=mRNA_S-dermatodea_contig1286.1748.1|Name=mRNA_S-dermatodea_contig1286.1748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2818bp|location=Sequence derived from alignment at S-dermatodea_contig1286:12180..14997+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGGATCAGGGGGGGCGTTCCCCGGCGCGGTCACCCAGGAGTTTGCGCT
CGAGCCTGCCATCGATCAGGTACTTGTAGAGTTGATGGTGGTGGTGGGGG
GGGGGGGTCACAAAAGCACATCAAACGGATATCGCTCAGGACAAAGACTC
TTACCATAACCATACAACATCATACATGATACGATACCATAGCATCATAT
GTAACAAGTGAGACTCCATAGGTGTGTTTAACAGCTTGGACCATCTTCCC
TCTTGAAAAGGTGGGACATTACCCCAATGCTCGCTCTTATGTTTTTGAAA
AATCTTTATTTTTTAGGAGGGTGGGAGGGGGCTTGGTAACTCCACACATG
ATGTAAAACCATAGCATCCTGTAATACGTAACGTAGCGTAGGCCTCTCGA
TAGGTGTGTAGCTTGGAACGTCTTTTTCCCCCCTTTAAAAAAAGTTGGAC
CCCAGAACTCGCTTTTTTTTTTTAATAAAGAAACATAACACAGCAAGTGC
ACAATCCATAACTCATCAGGACAGGACCCGGGTGGACTTTGTTGTACACA
AAACCTCAGTTGTCGAAATCGTTTATTGTTTCGGGGGCTGGTAAATACTA
ATGCTTCCGCCGTCGCTCGGAAGTCCTGCCTCCACCGCGGATGGGTTCAG
CGGTCCAAGCAATATGATAGCGCCCGCAAGCATAGCTTACGGTATGATAT
TATATTATAGTGGTCTCTCCGCGCCCCATGAATGACAACTCTTACCATGA
TATGTACGCACGCTTGGAGTTTTTTACTGAAAGGGGTGTTTTTTTTTTAA
TTATCAGTGCTTCTTTCGATATAATATATCTATAACTGTGTTTTTGTTTC
GTGGGAGGGGGGAGGGGGTATCGTCTCTATGTCGTACTTGTATCCACTGC
CTTCCTACCGTCTCCAGCTCTTTTCGAATGCCGCATGCAGATGAACACAG
CAGTAGTTGCAGTTCTGCAAGAGCAACGCACTCTGTACATACTTGTACCA
CACGGTCTATCGGAGAGCCTGGGCGACCTTTCCCCAACGCAAAGGGCGGA
TAAAATCCCACGGCAATCATACCCCACTTTTTGTTTTGAAATATTTTTTT
GTCTCACGGGGTGTTCCGTTGCCACTAGGGTTGTGAGTCGGCTGGCGTAG
CCAGCTTAAACTAATCGGCTGGCGAAGGCTGTCGACTATCCGACCCGGCG
CCGCCGGCTATATGCTGCCGCGTGAGAGAAACGCCATACCAGGACCTATG
AAACCCAAAGGCCAACTAGTCGGCGTGCCCCGCAGCCGACTGACTGACTA
TACAATAATTTAGTCAGTCGGACTATAGTCGGGGCCGACTCACAACCCTA
GTTGCCACCTAAATTGTTCGAGCCTTGGCGCGTTGAAGAGGTGTCACGGC
AAACTCCTTGAGCGGAGAGCGGAGTTCGTCGTACAGTACCGCGTCAGCCG
CTATGTCGAGATCGTCTGTTCAAGGGTGAAAAGGTTGACCTCGGCGTTCC
ACCGCAAGGAGGCATAGCCGGGCCCGGGCCCGGGGATGGGGACGAAGCAA
ACCGTGAAGAAGCGCCGTTGAAATATGAAATATCCTTGTTTTCGCAATGG
GCGCCGCGGAACAAGAAAAGCGATATCAGCGAGAAACGGGGGCATGCCGA
CATTCCTGAATCTTTCGTGCTCATCTCGGCCTTCATGCTCACTACATTAA
TATATACCAGTTTGTGTTAATAAAATATAAAAACTCGGCTCCGACGATCT
ACGGAGGACTACAAGTAACCGTTCCTTTTATTTCCGTGCACGCCTCGTGC
TTCTTTGTTTATGTGCGCGCGTGGGTCTTACATCATATCCTGGCGCGCGC
GGCCGCAGCTTCTCAAGTACGAAGGCTACGACTTTGCGCACCCTATCCTG
GCCGCTCCTCTCCGCCCCATGGTGGCGCACGAGGTTAGCCTGGAAGCCAT
GCGGCAGGCAGAGGTGAGCGATGTACGGGTACGGGACTGTACTCCGGGTA
TCGTATGTATCAGGCATGATTGGTGGCATGCGGCGATCGGAAAAGACAGC
CCTCCTCGGATTAGGGTGCGCACTTTATCTTAAAAGGTTCTACACATGAA
CGTGTGCCATCATTTGTGGGTATATTCTGTGCAGACCACGGCCCTTGTTT
CCCTACGTTCGTGTGCTCTCGTTTCTCGTTTCCGGAAAAAAGAATACGAA
ACGCCGCGCCGTTGTGTGTGTGTATACAGGCCGGACGAAGAAGGAAATTT
TCAAACTGTACATAAAAAATGGCAGCGCCACTAGCCCCCATTTAAAGAAA
GGTACTGTATGCTCCTTCCTTTTTTTTCGCTCACAGACCGCACGTTGCCC
CCCCCCCTCTTCCTGTCTCTCTCCCCCGCCCTAGGCTTCGAATCAATCGC
AAGACGAGGCTGACACGGCTGCGAACGCGGCAGAAGACTCGCTCGCCGCC
CCATCTTCCGGCGCGCGAAGCCCCGGGGATGCAACTAGGAGATCCCCTGC
AACCGGCGGCAAGGAGAGGCCGGCAGACAAACGGACACTTTTCCCTCTAG
AGAAGGGCACACGAAAGCCGAGCACCGACGGTGCTGGCGCGTCTACTGGC
GGCGAAAAAGTCGGAGACGGCAAGCCTAACTTGGCTACGGTGGCGACAGC
AGACGATAGAAAACGAGGAGCAGCTAGCGCGTCGAAAGAAGAGTTTCCGG
ATCGCCCGCCACACGTCGTACCGTTCTGGAACCGCACGAACTGGATCGCG
GGTAGAGAAGACGGCACCGGCGCGCGCGGCGCCGGTCGCACCAAAGACGC
GACCGCGACGGCTAAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1286:12180..14997+

>mRNA_S-dermatodea_contig1286.1748.1 ID=mRNA_S-dermatodea_contig1286.1748.1|Name=mRNA_S-dermatodea_contig1286.1748.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig1286:12180..14997+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGGATCAGGGGGGGCGTTCCCCGGCGCGGTCACCCAGGAGTTTGCGCT
CGAGCCTGCCATCGATCAGTACGGATCAGGGGGGGCGTTCCCCGGCGCGG
TCACCCAGGAGTTTGCGCTCGAGCCTGCCATCGATCAGCTTCTCAAGTAC
GAAGGCTACGACTTTGCGCACCCTATCCTGGCCGCTCCTCTCCGCCCCAT
GGTGGCGCACGAGGTTAGCCTGGAAGCCATGCGGCAGGCAGAGCTTCTCA
AGTACGAAGGCTACGACTTTGCGCACCCTATCCTGGCCGCTCCTCTCCGC
CCCATGGTGGCGCACGAGGTTAGCCTGGAAGCCATGCGGCAGGCAGAGGC
TTCGAATCAATCGCAAGACGAGGCTGACACGGCTGCGAACGCGGCAGAAG
ACTCGCTCGCCGCCCCATCTTCCGGCGCGCGAAGCCCCGGGGATGCAACT
AGGAGATCCCCTGCAACCGGCGGCAAGGAGAGGCCGGCAGACAAACGGAC
ACTTTTCCCTCTAGAGAAGGGCACACGAAAGCCGAGCACCGACGGTGCTG
GCGCGTCTACTGGCGGCGAAAAAGTCGGAGACGGCAAGCCTAACTTGGCT
ACGGTGGCGACAGCAGACGATAGAAAACGAGGAGCAGCTAGCGCGTCGAA
AGAAGAGTTTCCGGATCGCCCGCCACACGTCGTACCGTTCTGGAACCGCA
CGAACTGGATCGCGGGTAGAGAAGACGGCACCGGCGCGCGCGGCGCCGGT
CGCACCAAAGACGCGACCGCGACGGCTAAGGCTTCGAATCAATCGCAAGA
CGAGGCTGACACGGCTGCGAACGCGGCAGAAGACTCGCTCGCCGCCCCAT
CTTCCGGCGCGCGAAGCCCCGGGGATGCAACTAGGAGATCCCCTGCAACC
GGCGGCAAGGAGAGGCCGGCAGACAAACGGACACTTTTCCCTCTAGAGAA
GGGCACACGAAAGCCGAGCACCGACGGTGCTGGCGCGTCTACTGGCGGCG
AAAAAGTCGGAGACGGCAAGCCTAACTTGGCTACGGTGGCGACAGCAGAC
GATAGAAAACGAGGAGCAGCTAGCGCGTCGAAAGAAGAGTTTCCGGATCG
CCCGCCACACGTCGTACCGTTCTGGAACCGCACGAACTGGATCGCGGGTA
GAGAAGACGGCACCGGCGCGCGCGGCGCCGGTCGCACCAAAGACGCGACC
GCGACGGCTAAG
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