prot_S-dermatodea_contig12854.1744.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12854.1744.1
Unique Nameprot_S-dermatodea_contig12854.1744.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length61
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12854.1744.1 vs. uniprot
Match: D7FQ03_ECTSI (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ03_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.620e-21
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 0 
Query:    1 RLRKYLEDNALVRQSHMVAEGNPKVADHLSSLGDKLGGTVTLEGFARLAVGER 53
            RLRKYLE NAL RQ+HMVAEGNP+VADHL+SLG+++GGTVTLEGFARLAVGER
Sbjct:  306 RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGER 358
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12854.1744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ03_ECTSI1.620e-2184.91Elongation factor Ts, mitochondrial n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036402Elongation factor Ts, dimerisation domain superfamilySUPERFAMILY54713Elongation factor Ts (EF-Ts), dimerisation domaincoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12854contigS-dermatodea_contig12854:6771..6953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12854.1744.1mRNA_S-dermatodea_contig12854.1744.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12854 6771..6953 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12854.1744.1 ID=prot_S-dermatodea_contig12854.1744.1|Name=mRNA_S-dermatodea_contig12854.1744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
RLRKYLEDNALVRQSHMVAEGNPKVADHLSSLGDKLGGTVTLEGFARLAV
GERGASTDGA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036402EF-Ts_dimer_sf