mRNA_S-dermatodea_contig12854.1744.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12854.1744.1
Unique NamemRNA_S-dermatodea_contig12854.1744.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12854.1744.1 vs. uniprot
Match: D7FQ03_ECTSI (Elongation factor Ts, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ03_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.620e-21
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 RLRKYLEDNALVRQSHMVAEGNPKVADHLSSLGDKLGGTVTLEGFARLAVGER 159
            RLRKYLE NAL RQ+HMVAEGNP+VADHL+SLG+++GGTVTLEGFARLAVGER
Sbjct:  306 RLRKYLETNALTRQAHMVAEGNPRVADHLTSLGEEVGGTVTLEGFARLAVGER 358
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12854.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ03_ECTSI1.620e-2184.91Elongation factor Ts, mitochondrial n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12854contigS-dermatodea_contig12854:6771..6953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D7FQ03
KEGG koko:K02357
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031974,GO:0032543,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0071704,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,KOG1071@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.8603644-CDS-S-dermatodea_contig12854:6770..69531622924264.8603644-CDS-S-dermatodea_contig12854:6770..6953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12854 6771..6953 -
1694079135.7050698-CDS-S-dermatodea_contig12854:6770..69531694079135.7050698-CDS-S-dermatodea_contig12854:6770..6953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12854 6771..6953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12854.1744.1prot_S-dermatodea_contig12854.1744.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12854 6771..6953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12854.1744.1

>prot_S-dermatodea_contig12854.1744.1 ID=prot_S-dermatodea_contig12854.1744.1|Name=mRNA_S-dermatodea_contig12854.1744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
RLRKYLEDNALVRQSHMVAEGNPKVADHLSSLGDKLGGTVTLEGFARLAV
GERGASTDGA*
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mRNA from alignment at S-dermatodea_contig12854:6771..6953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12854.1744.1 ID=mRNA_S-dermatodea_contig12854.1744.1|Name=mRNA_S-dermatodea_contig12854.1744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig12854:6771..6953- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTGAGGAAATACTTGGAAGACAATGCCCTTGTTCGCCAGTCGCATAT
GGTGGCCGAGGGAAACCCGAAAGTGGCCGACCATCTCAGCAGCCTTGGAG
ATAAGTTGGGAGGAACGGTGACTCTCGAAGGCTTCGCGCGGCTGGCCGTG
GGCGAGAGAGGGGCCTCCACCGATGGGGCATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12854:6771..6953-

>mRNA_S-dermatodea_contig12854.1744.1 ID=mRNA_S-dermatodea_contig12854.1744.1|Name=mRNA_S-dermatodea_contig12854.1744.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig12854:6771..6953- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTGAGGAAATACTTGGAAGACAATGCCCTTGTTCGCCAGTCGCATAT
GGTGGCCGAGGGAAACCCGAAAGTGGCCGACCATCTCAGCAGCCTTGGAG
ATAAGTTGGGAGGAACGGTGACTCTCGAAGGCTTCGCGCGGCTGGCCGTG
GGCGAGAGAGGGGCCTCCACCGATGGGGCATAGAGGTTGAGGAAATACTT
GGAAGACAATGCCCTTGTTCGCCAGTCGCATATGGTGGCCGAGGGAAACC
CGAAAGTGGCCGACCATCTCAGCAGCCTTGGAGATAAGTTGGGAGGAACG
GTGACTCTCGAAGGCTTCGCGCGGCTGGCCGTGGGCGAGAGAGGGGCCTC
CACCGATGGGGCATAG
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