prot_S-dermatodea_contig93777.17415.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig93777.17415.1
Unique Name	prot_S-dermatodea_contig93777.17415.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	163

Homology

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 332 bits (851), Expect = 1.600e-112
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF
Sbjct:  135 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 297

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_GALSU (Photosystem II D2 protein n=20 Tax=cellular organisms TaxID=131567 RepID=PSBD_GALSU)

HSP 1 Score: 326 bits (835), Expect = 4.310e-110
Identity = 156/163 (95.71%), Postives = 163/163 (100.00%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPSFGVAAIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+AANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTS+IGI+GLALNLRAYDF
Sbjct:  135 VGIRPYNAIAFSGPIAVFVSVFLIYPLGQASWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIIGLALNLRAYDF 297

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A8CCU2_9EUKA (Photosystem II D2 protein (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A8CCU2_9EUKA)

HSP 1 Score: 322 bits (826), Expect = 1.670e-109
Identity = 154/163 (94.48%), Postives = 162/163 (99.39%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNAIAFSGPI++FV+VFL+YPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV G+WTS++GIVGLALNLR+YDF
Sbjct:  102 VGIRPYNAIAFSGPIAVFVTVFLVYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGMWTSSLGIVGLALNLRSYDF 264

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 322 bits (825), Expect = 1.420e-108
Identity = 155/163 (95.09%), Postives = 161/163 (98.77%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDF
Sbjct:  135 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDF 297

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A023HR93_NEOPR (Photosystem II D2 protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A023HR93_NEOPR)

HSP 1 Score: 322 bits (825), Expect = 1.420e-108
Identity = 155/163 (95.09%), Postives = 161/163 (98.77%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDF
Sbjct:  135 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDF 297

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A7W2A2C8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Cylindrospermopsis raciborskii CS-506_D TaxID=2585137 RepID=A0A7W2A2C8_9CYAN)

HSP 1 Score: 314 bits (804), Expect = 7.370e-108
Identity = 149/163 (91.41%), Postives = 158/163 (96.93%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNA+AFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTF AF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+GIVG ALNLRAYDF
Sbjct:    3 VGIRPYNALAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFPAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGXALNLRAYDF 165

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A1B7W3L9_9NOST (Photosystem II D2 protein (Fragment) n=1 Tax=Anabaena sp. MDT14b TaxID=1710886 RepID=A0A1B7W3L9_9NOST)

HSP 1 Score: 315 bits (807), Expect = 1.410e-107
Identity = 149/163 (91.41%), Postives = 160/163 (98.16%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VG+RPYNA+AFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLF+DG+ +NTFRAF PTQ+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW S+IGIVGLALNLRAYDF
Sbjct:   68 VGLRPYNALAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFDDGEGSNTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDF 230

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A351LCU8_9CYAN (Photosystem II (Fragment) n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A351LCU8_9CYAN)

HSP 1 Score: 316 bits (809), Expect = 2.760e-107
Identity = 149/163 (91.41%), Postives = 160/163 (98.16%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNA+AF+GPIS+FVSVFL+YPLGQ+SWFFAPSFGVAAIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTFRAF PTQ+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW S+IGIVGLALNLRAYDF
Sbjct:   56 VGIRPYNALAFTGPISVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDF 218

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_NOSP7 (Photosystem II D2 protein n=96 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_NOSP7)

HSP 1 Score: 318 bits (816), Expect = 3.310e-107
Identity = 151/163 (92.64%), Postives = 159/163 (97.55%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VGIRPYNA+AFS PI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAG+LGGALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+GIVGLALNLRAYDF
Sbjct:  135 VGIRPYNALAFSAPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGLALNLRAYDF 297

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BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A6P0NK98_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NK98_9CYAN)

HSP 1 Score: 314 bits (804), Expect = 8.900e-107
Identity = 150/163 (92.02%), Postives = 158/163 (96.93%), Query Frame = 0

Query:    1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 163
            VG+RPYNAIAFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFED D ANTFRAF PTQ+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPV GLW S+IGIVGLALNLRAYDF
Sbjct:   39 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDSDQANTFRAFEPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGLWMSSIGIVGLALNLRAYDF 201

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBD_HETA2	1.600e-112	100.00	Photosystem II D2 protein n=340 Tax=cellular organ...	[more]
PSBD_GALSU	4.310e-110	95.71	Photosystem II D2 protein n=20 Tax=cellular organi...	[more]
A8CCU2_9EUKA	1.670e-109	94.48	Photosystem II D2 protein (Fragment) n=3 Tax=Eukar...	[more]
PSBD_NEOYE	1.420e-108	95.09	Photosystem II D2 protein n=59 Tax=Eukaryota TaxID...	[more]
A0A023HR93_NEOPR	1.420e-108	95.09	Photosystem II D2 protein n=12 Tax=cellular organi...	[more]
A0A7W2A2C8_9CYAN	7.370e-108	91.41	Photosystem II D2 protein (Photosystem q(A) protei...	[more]
A0A1B7W3L9_9NOST	1.410e-107	91.41	Photosystem II D2 protein (Fragment) n=1 Tax=Anaba...	[more]
A0A351LCU8_9CYAN	2.760e-107	91.41	Photosystem II (Fragment) n=2 Tax=unclassified Cya...	[more]
PSBD_NOSP7	3.310e-107	92.64	Photosystem II D2 protein n=96 Tax=Cyanobacteria T...	[more]
A0A6P0NK98_9CYAN	8.900e-107	92.02	Photosystem II D2 protein (Photosystem q(A) protei...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PRINTS	PR00256	REACTNCENTRE	coord: 61..87 score: 33.33 coord: 6..28 score: 24.43
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..155 e-value: 3.6E-48 score: 164.0
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..163
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 55..81
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 6..158 e-value: 1.4E-21 score: 78.9
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..163
None	No IPR available	PANTHER	PTHR33149:SF7		coord: 1..163
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..30
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 82..130
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 157..163
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 31..49
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 50..60
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 61..81
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 131..156
None	No IPR available	TMHMM	TMhelix		coord: 61..83
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	TMHMM	TMhelix		coord: 32..49

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig93777	contig	S-dermatodea_contig93777:56..544 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig93777.17415.1	mRNA_S-dermatodea_contig93777.17415.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig93777 56..544 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig93777.17415.1 ID=prot_S-dermatodea_contig93777.17415.1|Name=mRNA_S-dermatodea_contig93777.17415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFL
QGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAF
TPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIG
IVGLALNLRAYDF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf