mRNA_S-dermatodea_contig93777.17415.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2) HSP 1 Score: 332 bits (851), Expect = 1.600e-112 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF
Sbjct: 135 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 297
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_GALSU (Photosystem II D2 protein n=20 Tax=cellular organisms TaxID=131567 RepID=PSBD_GALSU) HSP 1 Score: 326 bits (835), Expect = 4.310e-110 Identity = 156/163 (95.71%), Postives = 163/163 (100.00%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPSFGVAAIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+AANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTS+IGI+GLALNLRAYDF
Sbjct: 135 VGIRPYNAIAFSGPIAVFVSVFLIYPLGQASWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIIGLALNLRAYDF 297
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A8CCU2_9EUKA (Photosystem II D2 protein (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A8CCU2_9EUKA) HSP 1 Score: 322 bits (826), Expect = 1.670e-109 Identity = 154/163 (94.48%), Postives = 162/163 (99.39%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNAIAFSGPI++FV+VFL+YPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV G+WTS++GIVGLALNLR+YDF
Sbjct: 102 VGIRPYNAIAFSGPIAVFVTVFLVYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGMWTSSLGIVGLALNLRSYDF 264
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE) HSP 1 Score: 322 bits (825), Expect = 1.420e-108 Identity = 155/163 (95.09%), Postives = 161/163 (98.77%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDF
Sbjct: 135 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDF 297
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A023HR93_NEOPR (Photosystem II D2 protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A023HR93_NEOPR) HSP 1 Score: 322 bits (825), Expect = 1.420e-108 Identity = 155/163 (95.09%), Postives = 161/163 (98.77%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDF
Sbjct: 135 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDF 297
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A7W2A2C8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Cylindrospermopsis raciborskii CS-506_D TaxID=2585137 RepID=A0A7W2A2C8_9CYAN) HSP 1 Score: 314 bits (804), Expect = 7.370e-108 Identity = 149/163 (91.41%), Postives = 158/163 (96.93%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNA+AFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTF AF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+GIVG ALNLRAYDF
Sbjct: 3 VGIRPYNALAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFPAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGXALNLRAYDF 165
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A1B7W3L9_9NOST (Photosystem II D2 protein (Fragment) n=1 Tax=Anabaena sp. MDT14b TaxID=1710886 RepID=A0A1B7W3L9_9NOST) HSP 1 Score: 315 bits (807), Expect = 1.410e-107 Identity = 149/163 (91.41%), Postives = 160/163 (98.16%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VG+RPYNA+AFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLF+DG+ +NTFRAF PTQ+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW S+IGIVGLALNLRAYDF
Sbjct: 68 VGLRPYNALAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFDDGEGSNTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDF 230
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A351LCU8_9CYAN (Photosystem II (Fragment) n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A351LCU8_9CYAN) HSP 1 Score: 316 bits (809), Expect = 2.760e-107 Identity = 149/163 (91.41%), Postives = 160/163 (98.16%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNA+AF+GPIS+FVSVFL+YPLGQ+SWFFAPSFGVAAIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTFRAF PTQ+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW S+IGIVGLALNLRAYDF
Sbjct: 56 VGIRPYNALAFTGPISVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDF 218
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: PSBD_NOSP7 (Photosystem II D2 protein n=96 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_NOSP7) HSP 1 Score: 318 bits (816), Expect = 3.310e-107 Identity = 151/163 (92.64%), Postives = 159/163 (97.55%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VGIRPYNA+AFS PI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAG+LGGALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+GIVGLALNLRAYDF
Sbjct: 135 VGIRPYNALAFSAPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGLALNLRAYDF 297
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Match: A0A6P0NK98_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NK98_9CYAN) HSP 1 Score: 314 bits (804), Expect = 8.900e-107 Identity = 150/163 (92.02%), Postives = 158/163 (96.93%), Query Frame = 1
Query: 1 VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDF 489
VG+RPYNAIAFSGPI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFED D ANTFRAF PTQ+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPV GLW S+IGIVGLALNLRAYDF
Sbjct: 39 VGLRPYNAIAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDSDQANTFRAFEPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGLWMSSIGIVGLALNLRAYDF 201 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93777.17415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig93777.17415.1 >prot_S-dermatodea_contig93777.17415.1 ID=prot_S-dermatodea_contig93777.17415.1|Name=mRNA_S-dermatodea_contig93777.17415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp VGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLback to top mRNA from alignment at S-dermatodea_contig93777:56..544- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig93777.17415.1 ID=mRNA_S-dermatodea_contig93777.17415.1|Name=mRNA_S-dermatodea_contig93777.17415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at S-dermatodea_contig93777:56..544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig93777:56..544- >mRNA_S-dermatodea_contig93777.17415.1 ID=mRNA_S-dermatodea_contig93777.17415.1|Name=mRNA_S-dermatodea_contig93777.17415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig93777:56..544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |