mRNA_S-dermatodea_contig9377.17414.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9377.17414.1
Unique NamemRNA_S-dermatodea_contig9377.17414.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 2.020e-112
Identity = 156/163 (95.71%), Postives = 160/163 (98.16%), Query Frame = 1 
Query:    1 EVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFNDDFTIEQYDCCYHVMHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTQAGQA-VITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQGKQDRRSKRKR 486
            EVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEF+DDFTIEQYDCCYHVMH DK+GVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPT+AGQA VITSWYTCSLVTRR VEAGEELTICYAKFPPAWD+GKQDRRSKRKR
Sbjct:  126 EVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFPPAWDKGKQDRRSKRKR 288
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BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.520e-31
Identity = 64/146 (43.84%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:   13 KPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFNDDFTIEQYDCCYHVMHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFPPAWD 450
            K S I G+G F K    +G  V  ++LP       F    Y C  H+MH D    + IDPG   RGN+  C  D   R++RLLNHS SPN EL  G AA PDW+E    G A    WYTCS+     +E G ELTI YA  P  WD
Sbjct:  768 KKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAI--GGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD 911
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBG8_9PHAE2.020e-11295.71SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE1.520e-3143.84SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9377contigS-dermatodea_contig9377:6061..6569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size509
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9377.17414.1prot_S-dermatodea_contig9377.17414.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9377 6214..6549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.8949707-UTR-S-dermatodea_contig9377:6060..62131622925403.8949707-UTR-S-dermatodea_contig9377:6060..6213Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9377 6061..6213 +
1694079910.4398575-UTR-S-dermatodea_contig9377:6060..62131694079910.4398575-UTR-S-dermatodea_contig9377:6060..6213Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9377 6061..6213 +
1622925403.9233491-UTR-S-dermatodea_contig9377:6549..65691622925403.9233491-UTR-S-dermatodea_contig9377:6549..6569Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9377 6550..6569 +
1694079910.4601648-UTR-S-dermatodea_contig9377:6549..65691694079910.4601648-UTR-S-dermatodea_contig9377:6549..6569Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9377 6550..6569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.9090905-CDS-S-dermatodea_contig9377:6213..65491622925403.9090905-CDS-S-dermatodea_contig9377:6213..6549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9377 6214..6549 +
1694079910.4501739-CDS-S-dermatodea_contig9377:6213..65491694079910.4501739-CDS-S-dermatodea_contig9377:6213..6549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9377 6214..6549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9377.17414.1

>prot_S-dermatodea_contig9377.17414.1 ID=prot_S-dermatodea_contig9377.17414.1|Name=mRNA_S-dermatodea_contig9377.17414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGG
AAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQ
GKQDRRSKRKR*
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mRNA from alignment at S-dermatodea_contig9377:6061..6569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9377.17414.1 ID=mRNA_S-dermatodea_contig9377.17414.1|Name=mRNA_S-dermatodea_contig9377.17414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at S-dermatodea_contig9377:6061..6569+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGTAGAGGAGAAGCCAAGCCAGATTGAAGGCCACGGGGCGTTTCTTAA
GCGTGGCGCGAGCAAAGGCACAACAGTGCACACGTCGGTGTTGCCTAGCT
CCGAATTCAACGATGATTTTACGATCGAACAGTACGACTGCTGCTATCAT
GTGATGCATCGTGACAAGAGCGGGGTGGTGTACATCGACCCAGGTGCCCT
TTTCCGAGGCAACCTGATGGGGTGCCTGGAGGACATGGGAAGTAGGGTGA
TCCGACTTTTAAACCACAGCAGCTCGCCTAATGCCGAGCTATGTTTCGGC
GGAGCGGCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGACAGGCAGT
GATTACAAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTAGAAG
CAGGGGAAGAACTTACGATTTGCTATGCCAAGTTTCCGCCCGCGTGGGAC
CAGGGTAAGCAGGATAGGAGAAGTAAGAGGAAGCGGTAGACTACGGCATT
AGCATAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9377:6061..6569+

>mRNA_S-dermatodea_contig9377.17414.1 ID=mRNA_S-dermatodea_contig9377.17414.1|Name=mRNA_S-dermatodea_contig9377.17414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig9377:6061..6569+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATCGTGACAAGAGCGGGGTGGTGTACATCGACCCAGGTGCCCTTTT
CCGAGGCAACCTGATGGGGTGCCTGGAGGACATGGGAAGTAGGGTGATCC
GACTTTTAAACCACAGCAGCTCGCCTAATGCCGAGCTATGTTTCGGCGGA
GCGGCCCCTCCTGACTGGTATGAACCAACGCAAGCCGGACAGGCAGTGAT
TACAAGCTGGTACACGTGCTCACTCGTGACCCGTCGACCAGTAGAAGCAG
GGGAAGAACTTACGATTTGCTATGCCAAGTTTCCGCCCGCGTGGGACCAG
GGTAAGCAGGATAGGAGAAGTAAGAGGAAGCGGTAGATGCATCGTGACAA
GAGCGGGGTGGTGTACATCGACCCAGGTGCCCTTTTCCGAGGCAACCTGA
TGGGGTGCCTGGAGGACATGGGAAGTAGGGTGATCCGACTTTTAAACCAC
AGCAGCTCGCCTAATGCCGAGCTATGTTTCGGCGGAGCGGCCCCTCCTGA
CTGGTATGAACCAACGCAAGCCGGACAGGCAGTGATTACAAGCTGGTACA
CGTGCTCACTCGTGACCCGTCGACCAGTAGAAGCAGGGGAAGAACTTACG
ATTTGCTATGCCAAGTTTCCGCCCGCGTGGGACCAGGGTAAGCAGGATAG
GAGAAGTAAGAGGAAGCGGTAG
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