prot_S-dermatodea_contig9377.17414.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9377.17414.1
Unique Nameprot_S-dermatodea_contig9377.17414.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length112
Homology
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BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.390e-71
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0 
Query:    1 MHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTQAGQA-VITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQGKQDRRSKRKR 111
            MH DK+GVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPT+AGQA VITSWYTCSLVTRR VEAGEELTICYAKFPPAWD+GKQDRRSKRKR
Sbjct:  177 MHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFPPAWDKGKQDRRSKRKR 288
[Close]
BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.330e-22
Identity = 49/99 (49.49%), Postives = 56/99 (56.57%), Query Frame = 0 
Query:    1 MHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFPPAWD 99
            MH D    + IDPG   RGN+  C  D   R++RLLNHS SPN EL  G AA PDW+E    G A    WYTCS+     +E G ELTI YA  P  WD
Sbjct:  815 MHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAI--GGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD 911
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9377.17414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBG8_9PHAE2.390e-7194.64SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE4.330e-2249.49SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001214SET domainPFAMPF00856SETcoord: 8..91
e-value: 1.2E-9
score: 38.8
IPR001214SET domainPROSITEPS50280SETcoord: 1..92
score: 9.159
NoneNo IPR availableGENE3D2.170.270.10coord: 27..92
e-value: 2.7E-9
score: 38.8
NoneNo IPR availableSUPERFAMILY82199SET domaincoord: 32..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9377contigS-dermatodea_contig9377:6214..6549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9377.17414.1mRNA_S-dermatodea_contig9377.17414.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9377 6061..6569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9377.17414.1 ID=prot_S-dermatodea_contig9377.17414.1|Name=mRNA_S-dermatodea_contig9377.17414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MHRDKSGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGG
AAPPDWYEPTQAGQAVITSWYTCSLVTRRPVEAGEELTICYAKFPPAWDQ
GKQDRRSKRKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom